Cp4.1LG11g07330 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g07330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDEAD-box ATP-dependent RNA helicase 10
LocationCp4.1LG11 : 6022306 .. 6030356 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCGAAGTGACCCAAATCATACACGCCAGTTTATCACTCTATGGTCTCGATCATGCGTCCTAATCGAATCAAACAAGCTTGAGAAGAAAGATAAGCATGTAAACTGGAAAGAACTTTACCTTAAAAGCCTCAACAAGTACAGTATACTCTGCTTTGGTGATGGGAATATAAATGCTCTCATCCACGTTGGTTAGCTTGTTCTGAACGCCTTGTGCAACAAAATAGAACAGAAAAGTTAAGGGGATAAAATAAAGACTTTCTCTAGCATCATTGCAGTTTACATTCAACCTCAATGGATCATGAAGGTTTCAACACAAGACTTACTGAGGTTGAAAAAACGGCCAGAACCATCCGGAAGAGGCTCCACTTTTAGTATCTTTCTGACCTTCCCTTCATCACTGTAGAACAAATATTTTGTCTCTTGTTATCATAACATACTATGTTTTCAAACCTGCAGACCTTTGTTTACAAACAACTTACGACCTAAATATTTGGCTATTAAAAAGAAAATGGTCAGCATGTACACTCAAGAAGGGGGTGGTTTGTGCTACGAAAAAGATCGATGCGTCATTGTTTTCAATGTTAAAATCAAGCAATTTTGAGATCTAAGAAGAGCAAAATATTTGAGGAAACCAAAGATGCACAATACCTAAACATGAATACGACTCAACGAATGGTATATGTTGAGGATTGTTGGAAGAGGAGTCTCACATCGGTTCATTAAGGGGTTGATTATGGGTTTATAAGTAACGAATACTATCTCCGTTGGTATGAAGCCTTTCAGGGAAACCAAAAACAAAGTCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTTTGGAGAGTCATGGTTTCTAACATGGTATAAGAGCCATGTCAATAGAATCCTCAAGTGTCGAACAAAGAAGTTGTGAGGCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGATGTACTTTGTTCAAGGGCTCTAGAGAAGCAGTCTAGCCTCGATTAAGGAGAGGCTATTCGAGGGCTCCATAAGCCTCAGGGGAAGCTCTATAGTGTACTTTGTTCGAGGGGAGGATTGTTGAGGATTGTTGGGAGAGGAGTCACACATCGACTAACTAAGGGATTCCAAAAGCAAAACCATGAGAGCTTATGCACAAAGTGGACAATATCATACCATTGTAGAGAGTCGTAGTTTCTAAAAGTACAAGTTTAGATGGTACCTTTTTCCCTTATAGGGATCGTGAAAGAGTTCACAAGATTCGCGTGGGCCCAGGGCAACTAGACTTCCCAATTCTGTCACTGATAAAGAGAATACCTACATACAAAACAAACTATAATCTAATTGGTACATATCAGAAAATTATTATAAACAATAAAGACAAGGGAATGGTTTTCACGAAAAGTTCTTCACTGTCTGATTTAGTGATTTCAATTGCACAATGATTTAATCTTTACAAGACAGCATCTATTTTTGTTCTTAAAAATAATTAGAAAAACGAATGATGAACACAGCTCCCCAAACATGTCTTGGTATTTTCAATCTCATCGACTCCATCATGGAAATGATACTACAGATGCCCAATATGAAACCAGTGGAATAGTAATCAGCATTAACCTAGAATTTCACTTAAGCTAAGTTAAATATCAGCTTGTTTTTTAGAACCTGTTTTCTGCTCCAATCATATTGACGAACACCAGCTGCTGGGGCAAACTGAAGCAACACAAATCCTTCCCTGGATATTTTGAACGCCCCTGACTGACAAATTTTAAAAGATTAATAACCATAAAGAAAGAACTAACGAGGAAAAACAGCCTATCATGATTTAAAGCTCAGAATTCAAGTCAAACATACATCTAGAGGTGTGAACTCTGGTGGCCTAGGCTCAACTGTAAGAGCAGCCTTCCCTTTGTATATTGAATGACCAACAAAAAACCTTGGTGGCAATGCTGCAGCAGCTACAAACAAGCCAAACCATAAACACTTCAGAACCCGAGAAATCAAAACAACTAACAAGGAATAAACAAAGAATTTCAAGAAAAATGCCCCTGGATTTGGAGAGCTCCTTGAAATTGAATCAGTTCTAAGTAATCCAGTAAAATTTGAGGAATAGGAGATAAGCAAAAAGAAAACAAGGTCATAATAATTCAGTCCATCCACGGTTAAACAAAATCAGTCACAAACGGAGCTATATACTACATTTTCCTTCCAACATGAACCAAAATTTCCAAATAGCATCAATACTACAGGATACACGAAGTTCTTCCCGAAAAAACTTGAAAGGAAAGGGATAAAGAAGTACCTCCGGCGCGAGTTTGTGAGGAAAATGAATCCGTCTGAGAGCCGGATTCGAAGGCCGCCTGATGCTGCTGCGTGTTCCAGGAGTATTGACACTTTGGAGAAGATTTTGGTGTAGTAGAGAGAGTGAGGAGTGGGCGAAAGGAGTTGAGGCGACATAGTCGGCGGTTCGAAGAGGTTTCCGGCGAGAGTTCGGGGATTAATGGCGGAAGCAATGAAGAAGAAAGGCATTGAAGACGCAGCATGGTTTCGGCTTCGTCTTCGCAGAGGATTAGAGAGACAACCGGCAGGAGTTAGAGCGCCATTTTTTCACCGCCAAAGCTCATGGCCCTACAAAGTTTTATATCCTTTCGTAACCAAAATGTTCTATGGATAAGCGTAAAAGTAGAACCTATTTATAAGGCTCCTGTATTCCTTATTTATAAGCCCATGTTCTTAATTAGCGAGCCCTCACAAACGAGTGTAGTCCTCCAGCCCCTTAACGTTTCGAACTCCTTCAATGTTCTACTTGCTGCTAGATTCTTTTTGTGTACTCTCGAGATGTTTATTGCCCAAAAGAATGTGATTCCTTGTTCGTTTAAGGCTAGGGGAAGACGATTGAGCCAAATTTGTTCGTAACCAAACCGACTACGCCATCATCCTACTCGGTTTTGCAGCTCAGTGAGCGACTCCCCATTCAGCCGGCACCAGCTATCCGCCACCGCCAACAGGTTTGCAGTCGCTTCTCCTTCCTTCCTCGTGCTTTCTAGGTTGAAACATAACGCGGATTGATGTTATTTTCTTCTCTTGGTTCATGTGCTATTTCTTTCACCCTAAATTCGACATCCTTAACTTATGGCCATTGTTTATTGTAGGTTATGATTTGTTAATCTCAATCAAAGATTGTTTATATTTTCTCAAGGAAATGATTTCTTTCAGTTATTTTGTCTGATGTAGTTTATCTGAACTGAATTTCTCGTTTGTTACCTTCTAGGTTTAAACAATCTGACATGTTATATATACAAAGAAGTTTGATTGTCTTCATTTGGATAAGAAAAAATTGCGGCTCTAGCTTTGGTAGCCATTCAACCTGTTCAAGCTAAGGAAATTCCAGTAGCCTCTGGTTCTTAAGAGGACTCTTGTTAAGGTGGTTCTAACCTAAGAGAGTCTGAATATTGATATTTTGGTGTAGATTGGCTCATTGGTTGTATTTGGGACAAAAAGTGGGTGGAATCGGAGATCCGGGGAAGTGTTTATGGTCCCCAAAGGATTAGAGACAGGAAGGAATTTTAGAATGAGTTGGGTTATCTTTATGGCTTTTGTGGCTCGATTTGGTGTGTTGTTGGTGATTTCAATGTCACTCTGTCCCAGCAGAAAAGGCCTATCCAGGTAGGATAACTAGATCAATGAGGCTCTTCAATGGCTTTATAGTTAGGAAAGCTATTCGACCCTCTTATTCTAAATGAGAAGTTCACTTAGGATCTGTATTAGGATTGGCAGGTTCTTGCTCTCGAAGGATTGGATCGAGAGTTTTGGTGAGGTTAGGTAGATGATGGGTTTGAGAGTTACCTTAGAAATGGGGTTCATGTCGCATCGTTTTAAGAACACGTGGTTAGAGCACCCCTCCTTTAAATCCTACTTGTCTTTGTGGTGGAATGTCACGGTCCTATGTAACTTGGAAGGTTATAGTTTCATGGTTAGAACACGTGGATAAAGAGGGGTTCATGAATTTATTAATATACGTATAGTTGTATACAACACGAATAACCTTGATGCCATGATTATTACTCTTATCATGAAGAAAAAAACGTTGATGTCATGTTTTCTTAACAAATACAACTCTTAGATTATTATTATTTTCTTTGTTAAAAGGAAACAATATCTTTGAACTCTTTAATTATTGTGAATGTAGTTTAGCTTAAGATGAGAAACTAGCATGATCAAATTGAGATATTAATTTACGCGTCCCAACTCCGTCTTTCAGGTGCATTTATGTTCGTACATATTGTCCATGAAGGCCATAATTTTTTGTTCTCGACAAATCTCAACTTCCAAAAGGTTTGGAGGTTCTGCTGCCCATGAACGTTTTAACAGTTCTAAAGTTGAACTTTTTTCCAAAGAAGTGTGTGAGATAATATTGGACAAGTATCCTGACCTCAAAACATTGAATAAACTTCACTCCAAGATTATTGTTAATGAACATCTTCGGATTGATCCAACTCTTGCTATTAAGCTTATGAGAGCTTACTCTGCTAATGGGGTAACAAGAGTTGCCCGATACATATTCGATAGAACTCTTGAAAAGAATGTTGTGTTTTTTAATGTCATGATAAGAAGTTATGTGAACAACAACTTGTATGTTGAAGCTCTTTCCATTTATCAAGTCATGTCAAGTTGTGCTTTTAATCCTGATCATTACACATTCCCTTGTGTTTTGAAGGCATGTTCTGGATTGGATAATTTGAGGGTTGGGTTACAAGTTCATGATGCAATAGTGAAAGTTGGTCTTGACTCGAATTTGTTTATTGGTAATGCTTTGGTAGCCATGTATGGTAAATGTGGTCGTTTAAGGGAGGCTCGAAAAGTCCTTGATCAAATGCCAAATAGAGATGTGGTTTCTTGGAATTCAATGGTTGCTGGGTATGCACAAAGTGGGCAATTTGATGATGCTTTGGAAATTTGTAAGGAAATGGATTCTCTAAAGCTGAATCATGATGCTGGTACAATGGCTAGCCTTTTGCCTGTCGTGAAAGCTGAATCATCACCGGAAAATGTTCGGTATGTCCATAACATGTTCGAGAAGATGGCTAGGAAGAGTTTGGTTTCATGGAACGTGATGATAGCAATATATGTGAATAATTCTATGCCAAATGAAGCCGTTAGCTTATTTTCACAAATGGAAGAATGCGGGATGAAGCCCGATGCAGTTACAATTGCGAGCCTTCTTCCTGCTTGTGGGGACCTTTCAGCTCTATTTCTAGGAAGGCGTCTTCATAAATATATCGAGAAGGACAATCTTCTGCCGAATTTGTTACTGGAGAATGCATTGCTTGACATGTATGCTAAGTGTGGCTGTTTAGAAGAAGCTAGGGATGTATTTGATAAGATGAAGTTGCGAGATGTCGTGTCATGGACATCAATGATGTCTGTGTATGGAAAAAGCGGTCAAGGCTATGATGCCGTGGCACTCTTTGCGAAGATGCTAGACTCGGGTCTAAACCCGGATTCCATTTCTTTTGTTTCTGTACTCTCTGCTTGTAGCCATGCAGGATTGTTGGAGCAGGGGCGTCGTTACTTCCATATCATGACTGAACAATATAGGATAGTTCCTAGGATAGAACACTTCGCATGCATGGTTGATCTATTTGGACGAGCTGGTGAAGTGGAAGAGGCATATAGTTTCATCAAGCAGATGCCAATGGAGCCAAATGAAAGAGTTTGGGGTGCACTTTTGAGTGCTTGTCGAGTGCACTCGAAGATGGATATCGGACTCATAGCTGCCGATTCTCTTTTTCAATTGGCTCCTAAGCAATCGGGCTACTATGTCTTGTTATCGAACATTTATGCAAAGGCTGGTATGTGGAAAGACGTAATGAATGTTCGAAACGCAATGAAGAAAATAGGAATTAAGAAAGTGCCGGGCATTAGTAATGTCGAGCTTAAGGGTCAAGTTCATACATTTCTTGCTGGTGATCAATATCATCCACAGGCAAAGAGTATATATGAAGAGCTGGATTTATTAGTTGGGAAGATGAAGGAGTTAGGCTACATTCCTCAAACTGAGTCGGCTCTCCACGACGTCGAGGTTGAGGATAAAGAATGTCATCTAGCTATTCATAGTGAAAAGTTGGCGATTGTCTTTGCTATTTTAAACACGAAGCATGGTACACCAATTAGAATTACCAAGAACCTTCGTGTTTGTGGGGATTGCCATGTTGCGATTAAACTTATCTCGAAAATAGTGTCACGTGACATTATTATTAGAGATTGCAACCGTTTTCACCATTTCAGTAATGGAATTTGCTCGTGTGGAGATTACTGGTGAGCGTCCTAGATGTTTAAGTAACTTCGGAGATCATTTGGGAAATGGACAAGCTTGTGATGCCACCATTTTTCTTGCCTTCGAAGCTTTAGGTGATATGATTTATCTTCTATAAGTATCTGTTCTCATAGTTTCCATTTGCATTTTTGGTGTGAATTGTGATGTATTTAATTTGAACTCCTTAAGTAAGAAACATAACTTTGTTAGTATCTGCATTCTTGTACACCATAACTTTGTTAATAATCTTGTTTTGAGTAGCTTGTTTTGCATGTTGAGCAGGTCCTTGATGATGAGGCAGACAGGTTATTGAATGTCGACTTCGAAAAATCAATATATGAAAGTACAAACGAAATGGCTCGCGAGAGAGCATATCTATTTTCTGCTACTACAAAAAAGGTATATGAGAACATTTTCACAGAGCATATCTCTTTTGAATATTTACAATTTCACAGAGCTTCCTCTTTCTTTAGTTTTTCATTATCTGATTATGATGATGCTATACCTTTTTATTCGTATAAAATTATTTGTAGTTATTGTTCGTTTGGTAATACAGTTTGTCAGTCATAGAGATGTACCTAGATGATCGAGGAGTTCCTCGTCTGTCCGTCTCTTAGGGATAAGAGCTGTTTCTTGTGGCTTATGGGGTGTGTGATTTATCGTGGGGTTTGTGGGGTGAAAGGAATAATAGTGTGAGATCCCACATCGGTTGGAGAGAGGAACGAAGTATTCTTTAGGAAGGTGTGGAAACTTCTCCCTAGCACACACATTTTAAAAATCAAAAACCTTAAGGAGAATCCCGAAAGGGAAAGCCCAAATAGGACAATATTTGCTAGTGGTGGGCTTGGACCGTTACAGATGGTATCAGAGCCAGACACCGAGCACAGATGCTGTGCTCCAAAAGAGAGTGGATTGTGAGATCATACATCGATTAGAGAGGGAAACGAGTGCAGAATGAGTGCCAGTGAGGATGTTGGGTCCCAAGGGGGGTGGATTGTGAAATCCCACATCGGTTGGAGAGGGGAACGAAACATTCTTTCTAAGGGCGTGGAAACCTCCCCCTAGTTGTTACAATAGTGTTTAGAGGGTTGGAATGGGATCCAAGAGATGTGTTCCTTTTTTGGATGCTCGTGGGTTCTTTCATTTTTTTTCAAAAAAAAAACTCCATTCTCTATGAAATGATGTTTTTTTTAATTAAAAAGAAAAGGCTAAAGTTTAACAGATTGTTTCTGGACACTGATATTGAATTCTTTCAGATTGAAGCAGCAACCAAATATTGTAGAGTAGACACATTGAAGCAACAATATTATTCTATCACTGCAAAGTATAAGGTTATTCTACTTCTTGCTTTCTTACTTTTATTGTGTCCATCTAATAATGTTGATTTTTCATTTTTTAAGGATCATGTTTTCCCTTTCCATTCTCCCTTTGAATGTACAAATGGATATGAATGTAACTATCCTAGCTTTACCTCCATGATCTAGGATGTGACTTGAGTATTTAAAAATATTCAGCAAGTAACCTCATTATTGACGTAAAGGAATGCAAACACAAGCAATCATAATGACCTGTTTTTTCATAAAACATTGTACCCTCGGGCTCAACTAGTTCAAGCAGGGTTGGATGTGCAATATTTCTCTACACATGGCTTCCGCATGCGCACATAGATCCACCAAACATGCTCATATATGACTCCTTGGACCTGACTAGTCAACAAACATAAATATCGTAA

mRNA sequence

TTTCGAAGTGACCCAAATCATACACGCCAGTTTATCACTCTATGGTCTCGATCATGCGTCCTAATCGAATCAAACAAGCTTGAGAAGAAAGATAAGCATGTAAACTGGAAAGAACTTTACCTTAAAAGCCTCAACAAGTACAGTATACTCTGCTTTGGTGATGGGAATATAAATGCTCTCATCCACGTTGGATACACGAAGTTCTTCCCGAAAAAACTTGAAAGGAAAGGGATAAAGAAGTACCTCCGGCGCGAGTTTGTGAGGAAAATGAATCCGTCTGAGAGCCGGATTCGAAGGCCGCCTGATGCTGCTGCGTGTTCCAGGAGTATTGACACTTTGGAGAAGATTTTGAGGTTTCCGGCGAGAGTTCGGGGATTAATGGCGGAAGCAATGAAGAAGAAAGGCATTGAAGACGCAGCATGGTTTCGGCTTCGTCTTCGCAGAGGATTAGAGAGACAACCGGCAGGAGTTAGAGCGCCATTTTTTCACCGCCAAAGCTCATGGCCCTACAAAGGGAAGACGATTGAGCCAAATTTGTTCGTAACCAAACCGACTACGCCATCATCCTACTCGGTTTTGCAGCTCAGTGAGCGACTCCCCATTCAGCCGGCACCAGCTATCCGCCACCGCCAACAGGCCATAATTTTTTGTTCTCGACAAATCTCAACTTCCAAAAGGTTTGGAGGTTCTGCTGCCCATGAACGTTTTAACAGTTCTAAAGTTGAACTTTTTTCCAAAGAAGTGTGTGAGATAATATTGGACAAGTATCCTGACCTCAAAACATTGAATAAACTTCACTCCAAGATTATTGTTAATGAACATCTTCGGATTGATCCAACTCTTGCTATTAAGCTTATGAGAGCTTACTCTGCTAATGGGGTAACAAGAGTTGCCCGATACATATTCGATAGAACTCTTGAAAAGAATGTTGTGTTTTTTAATGTCATGATAAGAAGTTATGTGAACAACAACTTGTATGTTGAAGCTCTTTCCATTTATCAACTGAATCATGATGCTGGTACAATGGCTAGCCTTTTGCCTGTCGTGAAAGCTGAATCATCACCGGAAAATGTTCGGTATGTCCATAACATGTTCGAGAAGATGGCTAGGAAGAGTTTGGTTTCATGGAACGTGATGATAGCAATATATGTCCTTGATGATGAGGCAGACAGGTTATTGAATGTCGACTTCGAAAAATCAATATATGAAAGTACAAACGAAATGGCTCGCGAGAGAGCATATCTATTTTCTGCTACTACAAAAAAGATTGAAGCAGCAACCAAATATTGTAGAGTAGACACATTGAAGCAACAATATTATTCTATCACTGCAAAGTATAAGGATGTGACTTGAGTATTTAAAAATATTCAGCAAGTAACCTCATTATTGACGTAAAGGAATGCAAACACAAGCAATCATAATGACCTGTTTTTTCATAAAACATTGTACCCTCGGGCTCAACTAGTTCAAGCAGGGTTGGATGTGCAATATTTCTCTACACATGGCTTCCGCATGCGCACATAGATCCACCAAACATGCTCATATATGACTCCTTGGACCTGACTAGTCAACAAACATAAATATCGTAA

Coding sequence (CDS)

TTTCGAAGTGACCCAAATCATACACGCCAGTTTATCACTCTATGGTCTCGATCATGCGTCCTAATCGAATCAAACAAGCTTGAGAAGAAAGATAAGCATGTAAACTGGAAAGAACTTTACCTTAAAAGCCTCAACAAGTACAGTATACTCTGCTTTGGTGATGGGAATATAAATGCTCTCATCCACGTTGGATACACGAAGTTCTTCCCGAAAAAACTTGAAAGGAAAGGGATAAAGAAGTACCTCCGGCGCGAGTTTGTGAGGAAAATGAATCCGTCTGAGAGCCGGATTCGAAGGCCGCCTGATGCTGCTGCGTGTTCCAGGAGTATTGACACTTTGGAGAAGATTTTGAGGTTTCCGGCGAGAGTTCGGGGATTAATGGCGGAAGCAATGAAGAAGAAAGGCATTGAAGACGCAGCATGGTTTCGGCTTCGTCTTCGCAGAGGATTAGAGAGACAACCGGCAGGAGTTAGAGCGCCATTTTTTCACCGCCAAAGCTCATGGCCCTACAAAGGGAAGACGATTGAGCCAAATTTGTTCGTAACCAAACCGACTACGCCATCATCCTACTCGGTTTTGCAGCTCAGTGAGCGACTCCCCATTCAGCCGGCACCAGCTATCCGCCACCGCCAACAGGCCATAATTTTTTGTTCTCGACAAATCTCAACTTCCAAAAGGTTTGGAGGTTCTGCTGCCCATGAACGTTTTAACAGTTCTAAAGTTGAACTTTTTTCCAAAGAAGTGTGTGAGATAATATTGGACAAGTATCCTGACCTCAAAACATTGAATAAACTTCACTCCAAGATTATTGTTAATGAACATCTTCGGATTGATCCAACTCTTGCTATTAAGCTTATGAGAGCTTACTCTGCTAATGGGGTAACAAGAGTTGCCCGATACATATTCGATAGAACTCTTGAAAAGAATGTTGTGTTTTTTAATGTCATGATAAGAAGTTATGTGAACAACAACTTGTATGTTGAAGCTCTTTCCATTTATCAACTGAATCATGATGCTGGTACAATGGCTAGCCTTTTGCCTGTCGTGAAAGCTGAATCATCACCGGAAAATGTTCGGTATGTCCATAACATGTTCGAGAAGATGGCTAGGAAGAGTTTGGTTTCATGGAACGTGATGATAGCAATATATGTCCTTGATGATGAGGCAGACAGGTTATTGAATGTCGACTTCGAAAAATCAATATATGAAAGTACAAACGAAATGGCTCGCGAGAGAGCATATCTATTTTCTGCTACTACAAAAAAGATTGAAGCAGCAACCAAATATTGTAGAGTAGACACATTGAAGCAACAATATTATTCTATCACTGCAAAGTATAAGGATGTGACTTGA

Protein sequence

FRSDPNHTRQFITLWSRSCVLIESNKLEKKDKHVNWKELYLKSLNKYSILCFGDGNINALIHVGYTKFFPKKLERKGIKKYLRREFVRKMNPSESRIRRPPDAAACSRSIDTLEKILRFPARVRGLMAEAMKKKGIEDAAWFRLRLRRGLERQPAGVRAPFFHRQSSWPYKGKTIEPNLFVTKPTTPSSYSVLQLSERLPIQPAPAIRHRQQAIIFCSRQISTSKRFGGSAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIVNEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALSIYQLNHDAGTMASLLPVVKAESSPENVRYVHNMFEKMARKSLVSWNVMIAIYVLDDEADRLLNVDFEKSIYESTNEMARERAYLFSATTKKIEAATKYCRVDTLKQQYYSITAKYKDVT
Homology
[Close]
BLAST of Cp4.1LG11g07330 vs. Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-14
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 1 

Query: 252 ILDKYPDLKTLNKLHSKIIVNEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVV 311
           +LD YPD++TL  +HS+II+ E LR + +L +KLMRAY++      AR +FD   E+NV+
Sbjct: 48  VLDTYPDIRTLRTVHSRIIL-EDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 107

Query: 312 FFNVMIRSYVNNNLYVEALSIY------QLNHDAGTMASLLPVVKAESSPENVRYVHN-- 371
             NVMIRSYVNN  Y E + ++       +  D  T   +L       +    R +H   
Sbjct: 108 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 167

Query: 372 ------------------------------MFEKMARKSLVSWNVMIAIYVLDDEADRLL 396
                                         + ++M+R+ +VSWN ++  Y  +   D  L
Sbjct: 168 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 227

[Close]
BLAST of Cp4.1LG11g07330 vs. Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-09
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 383 YVLDDEADRLLNVDFEKSIYESTNEMARER-AYLFSAT-TKK--------------IEAA 442
           Y++ DEADRLLN DFEKS+ +   E+  ER  +LFSAT TKK              IEAA
Sbjct: 167 YLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAA 226

Query: 443 TKYCRVDTLKQQYYSITAKYKD 449
           +KY  VDTLKQQY  + AKYKD
Sbjct: 227 SKYSTVDTLKQQYRFVAAKYKD 248

[Close]
BLAST of Cp4.1LG11g07330 vs. Swiss-Prot
Match: RH10_ORYSJ (DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica GN=Os03g0669000 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-07
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 383 YVLDDEADRLLNVDFEKSIYESTNEMARER-AYLFSATTK---------------KIEAA 442
           Y++ DEAD+LLNV+F+K++ +  N + +ER  +LFSAT                 K+E A
Sbjct: 189 YLVLDEADKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRACLRNPVKVEVA 248

Query: 443 TKYCRVDTLKQQYYSITAKYKD 449
           +KY  VDTL+Q++Y + A YKD
Sbjct: 249 SKYSTVDTLRQEFYFVPADYKD 270

[Close]
BLAST of Cp4.1LG11g07330 vs. Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-07
Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = 1 

Query: 285 LMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALSIYQLNHDAGTMAS 344
           ++  Y +NG+ + AR +FD   E+NVV +N ++  Y+ N + VEA ++++L  +   + S
Sbjct: 54  IVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPER-NVVS 113

Query: 345 LLPVVKAESSPENVRYVHNMFEKMARKSLVSWNVMIAIYVLD---DEADRLLNVDFEKSI 404
              +VK       V    ++F +M  ++ VSW VM    + D   D+A +L ++   K +
Sbjct: 114 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDV 173

Query: 405 YESTN 407
             STN
Sbjct: 174 VASTN 177

[Close]
BLAST of Cp4.1LG11g07330 vs. TrEMBL
Match: A0A0A0KE24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404230 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 119/227 (52.42%), Postives = 144/227 (63.44%), Query Frame = 1 

Query: 212 QAIIFCSRQISTSKRFGG--SAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKI 271
           +AIIFC+RQI  S +F G  S+   RF+  KVE+FSKE CE+ILD+YP +KTLNKLHSKI
Sbjct: 2   KAIIFCTRQILNSNKFRGIVSSTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSKI 61

Query: 272 IVNEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEA 331
           ++NEHLRIDPTLAIKLMRAYSA G T VARYIFDR+LEKNVVFFNVMIRSYVNNNLYVEA
Sbjct: 62  VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121

Query: 332 LSIYQL------NHDAGTMASLLPVVKAESSPENVR---YVH----------NMF----- 391
           LSI+Q+      N D  T      V+KA S  +N+R    VH          N+F     
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPC---VLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNAL 181

Query: 392 -----------------EKMARKSLVSWNVMIAIYVLDDEADRLLNV 396
                            ++M  + +VSWN M+A Y    + D  L +
Sbjct: 182 VAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEI 225

[Close]
BLAST of Cp4.1LG11g07330 vs. TrEMBL
Match: V4RM67_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006441mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 1 

Query: 212 QAIIFCSRQISTSKRFGGSAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIV 271
           +A++   R  ST+K            S++  L S + C  ILDKYPD+KTL KLH++II+
Sbjct: 2   KAVVLLCRHFSTTKPVQALVL-----STQYTLLSGDACNDILDKYPDIKTLKKLHAQIII 61

Query: 272 NEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALS 331
           N+HL  +P++ +KLMR Y A G     R++FD    KNVVFFNV+IRSYVNN LY +AL 
Sbjct: 62  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 121

Query: 332 IYQ------LNHDAGTMA----------SLLPVVKAESSPENVRYVHNMF---------- 391
           +Y+       + D  T            SLL  ++   S   V   +N+F          
Sbjct: 122 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 181

Query: 392 ------------EKMARKSLVSWNVMIAIYVLDDEADRLLNV 396
                         M  K +V+WN M+A Y  +   D  L+V
Sbjct: 182 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218

[Close]
BLAST of Cp4.1LG11g07330 vs. TrEMBL
Match: A0A067EM74_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008276mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 1 

Query: 212 QAIIFCSRQISTSKRFGGSAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIV 271
           +A++   R  ST+K            S++  L S + C  ILDKYPD+KTL KLH++II+
Sbjct: 2   KAVVLLCRHFSTTKPVQALVL-----STQYTLLSGDACNDILDKYPDIKTLKKLHAQIII 61

Query: 272 NEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALS 331
           N+HL  +P++ +KLMR Y A G     R++FD    KNVVFFNV+IRSYVNN LY +AL 
Sbjct: 62  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 121

Query: 332 IYQ------LNHDAGTMA----------SLLPVVKAESSPENVRYVHNMF---------- 391
           +Y+       + D  T            SLL  ++   S   V   +N+F          
Sbjct: 122 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 181

Query: 392 ------------EKMARKSLVSWNVMIAIYVLDDEADRLLNV 396
                         M  K +V+WN M+A Y  +   D  L+V
Sbjct: 182 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218

[Close]
BLAST of Cp4.1LG11g07330 vs. TrEMBL
Match: B9RIP1_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1581390 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.1e-22
Identity = 66/186 (35.48%), Postives = 107/186 (57.53%), Query Frame = 1 

Query: 236 FNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIVNEHLRIDPTLAIKLMRAYSANGVT 295
           F +++   F++++C  ILD+YPD+ TL KLH K++ +++LR +P++ IKLMR Y+A G  
Sbjct: 11  FATARQLSFTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEP 70

Query: 296 RVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALSIYQLNHDAGTMASLLP---VVKAE 355
            +AR+IFD   +KNVVFFNVMIRSYVNN+LY +AL +Y+  +  G +  +     V+KA 
Sbjct: 71  GLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKAS 130

Query: 356 SSPENV------------------RYVHN-----------------MFEKMARKSLVSWN 384
           S  +++                   YV N                 + +++  + +VSWN
Sbjct: 131 SRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWN 190

[Close]
BLAST of Cp4.1LG11g07330 vs. TrEMBL
Match: A0A0D2NVJ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G199900 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 1 

Query: 219 RQISTSKRFGGSAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIVNEHLRID 278
           R  ST+K+    A+       +  + +++ C  ILD+YPD++TL KLHSKI  ++HLR +
Sbjct: 9   RHFSTAKQLKDFASSSSTPKPQ-PILNEDFCGKILDQYPDIRTLRKLHSKIFNDQHLRFN 68

Query: 279 PTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALSIYQ--LN 338
           P++AIKLMR Y+A G  +V R+IFD   EKN+VFFNVM+RSYVNN  Y +AL I++    
Sbjct: 69  PSIAIKLMRGYAACGEPKVTRHIFDEITEKNIVFFNVMMRSYVNNRCYHDALLIFRELST 128

Query: 339 HDAGTMASLLP-VVKAESSPENVR---YVHNMFEKMARK-SLVSWNVMIAIY 384
           H         P  +KA S  +N+R    +H+   K+    +L   N ++A+Y
Sbjct: 129 HGFSPDHYTYPCALKACSGSDNLRVGLQIHSSVVKVGLDLNLFIGNALVAMY 179

[Close]
BLAST of Cp4.1LG11g07330 vs. TAIR10
Match: AT3G49142.1 (AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-15
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 1 

Query: 252 ILDKYPDLKTLNKLHSKIIVNEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVV 311
           +LD YPD++TL  +HS+II+ E LR + +L +KLMRAY++      AR +FD   E+NV+
Sbjct: 48  VLDTYPDIRTLRTVHSRIIL-EDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 107

Query: 312 FFNVMIRSYVNNNLYVEALSIY------QLNHDAGTMASLLPVVKAESSPENVRYVHN-- 371
             NVMIRSYVNN  Y E + ++       +  D  T   +L       +    R +H   
Sbjct: 108 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 167

Query: 372 ------------------------------MFEKMARKSLVSWNVMIAIYVLDDEADRLL 396
                                         + ++M+R+ +VSWN ++  Y  +   D  L
Sbjct: 168 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 227

[Close]
BLAST of Cp4.1LG11g07330 vs. TAIR10
Match: AT5G60990.1 (AT5G60990.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 66.2 bits (160), Expect = 5.7e-11
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 383 YVLDDEADRLLNVDFEKSIYESTNEMARER-AYLFSAT-TKK--------------IEAA 442
           Y++ DEADRLLN DFEKS+ +   E+  ER  +LFSAT TKK              IEAA
Sbjct: 167 YLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAA 226

Query: 443 TKYCRVDTLKQQYYSITAKYKD 449
           +KY  VDTLKQQY  + AKYKD
Sbjct: 227 SKYSTVDTLKQQYRFVAAKYKD 248

[Close]
BLAST of Cp4.1LG11g07330 vs. TAIR10
Match: AT1G56690.1 (AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 9.2e-09
Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = 1 

Query: 285 LMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALSIYQLNHDAGTMAS 344
           ++  Y +NG+ + AR +FD   E+NVV +N ++  Y+ N + VEA ++++L  +   + S
Sbjct: 54  IVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPER-NVVS 113

Query: 345 LLPVVKAESSPENVRYVHNMFEKMARKSLVSWNVMIAIYVLD---DEADRLLNVDFEKSI 404
              +VK       V    ++F +M  ++ VSW VM    + D   D+A +L ++   K +
Sbjct: 114 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDV 173

Query: 405 YESTN 407
             STN
Sbjct: 174 VASTN 177

[Close]
BLAST of Cp4.1LG11g07330 vs. TAIR10
Match: AT2G35030.1 (AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-06
Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 1 

Query: 292 NGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALSIYQLNHDAGTMASLLPVVKA 351
           NG    AR +FD   E+N++ +N MI  Y  NN   EA  ++Q+  +    AS   ++  
Sbjct: 215 NGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERD-FASWNTMITG 274

Query: 352 ESSPENVRYVHNMFEKMARKSLVSWNVMIAIYVLDDEADRLLNVDFEKSIYEST 406
                 +     +F++M  K+++SW  MI  YV + E +  LNV F K + + +
Sbjct: 275 FIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNV-FSKMLRDGS 326

[Close]
BLAST of Cp4.1LG11g07330 vs. NCBI nr
Match: gi|449458017|ref|XP_004146744.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 119/227 (52.42%), Postives = 144/227 (63.44%), Query Frame = 1 

Query: 212 QAIIFCSRQISTSKRFGG--SAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKI 271
           +AIIFC+RQI  S +F G  S+   RF+  KVE+FSKE CE+ILD+YP +KTLNKLHSKI
Sbjct: 2   KAIIFCTRQILNSNKFRGIVSSTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSKI 61

Query: 272 IVNEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEA 331
           ++NEHLRIDPTLAIKLMRAYSA G T VARYIFDR+LEKNVVFFNVMIRSYVNNNLYVEA
Sbjct: 62  VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121

Query: 332 LSIYQL------NHDAGTMASLLPVVKAESSPENVR---YVH----------NMF----- 391
           LSI+Q+      N D  T      V+KA S  +N+R    VH          N+F     
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPC---VLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNAL 181

Query: 392 -----------------EKMARKSLVSWNVMIAIYVLDDEADRLLNV 396
                            ++M  + +VSWN M+A Y    + D  L +
Sbjct: 182 VAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEI 225

[Close]
BLAST of Cp4.1LG11g07330 vs. NCBI nr
Match: gi|659113231|ref|XP_008456467.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 115/184 (62.50%), Postives = 135/184 (73.37%), Query Frame = 1 

Query: 212 QAIIFCSRQISTSKRFGGSAAHER--FNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKI 271
           +AIIFC+RQI TS +F G  +  R  F+  KVE+FSKEVCEIILD+YP +KTLNKLHSKI
Sbjct: 2   KAIIFCTRQILTSNKFRGIVSSTRIHFDRLKVEVFSKEVCEIILDQYPGIKTLNKLHSKI 61

Query: 272 IVNEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEA 331
           +VNEHLRIDPTLAIKLMRAYSA G T VARYIFDR+LEKNVVFFNVMIRSYVNNNLY EA
Sbjct: 62  VVNEHLRIDPTLAIKLMRAYSACGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYFEA 121

Query: 332 LSIYQL------NHDAGTMASLLPVVKAESSPENVR---YVHNMFEKMARKS-LVSWNVM 384
           LSI+Q+      N D  T      V+KA S  +N+R    VH+   K+   S L   N +
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPC---VLKACSGLDNLRVGLQVHDAILKVGLDSNLFIGNAL 181

[Close]
BLAST of Cp4.1LG11g07330 vs. NCBI nr
Match: gi|641837207|gb|KDO56163.1| (hypothetical protein CISIN_1g008276mg [Citrus sinensis])

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 1 

Query: 212 QAIIFCSRQISTSKRFGGSAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIV 271
           +A++   R  ST+K            S++  L S + C  ILDKYPD+KTL KLH++II+
Sbjct: 2   KAVVLLCRHFSTTKPVQALVL-----STQYTLLSGDACNDILDKYPDIKTLKKLHAQIII 61

Query: 272 NEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALS 331
           N+HL  +P++ +KLMR Y A G     R++FD    KNVVFFNV+IRSYVNN LY +AL 
Sbjct: 62  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 121

Query: 332 IYQ------LNHDAGTMA----------SLLPVVKAESSPENVRYVHNMF---------- 391
           +Y+       + D  T            SLL  ++   S   V   +N+F          
Sbjct: 122 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 181

Query: 392 ------------EKMARKSLVSWNVMIAIYVLDDEADRLLNV 396
                         M  K +V+WN M+A Y  +   D  L+V
Sbjct: 182 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218

[Close]
BLAST of Cp4.1LG11g07330 vs. NCBI nr
Match: gi|567858820|ref|XP_006422093.1| (hypothetical protein CICLE_v10006441mg [Citrus clementina])

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 1 

Query: 212 QAIIFCSRQISTSKRFGGSAAHERFNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIV 271
           +A++   R  ST+K            S++  L S + C  ILDKYPD+KTL KLH++II+
Sbjct: 2   KAVVLLCRHFSTTKPVQALVL-----STQYTLLSGDACNDILDKYPDIKTLKKLHAQIII 61

Query: 272 NEHLRIDPTLAIKLMRAYSANGVTRVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALS 331
           N+HL  +P++ +KLMR Y A G     R++FD    KNVVFFNV+IRSYVNN LY +AL 
Sbjct: 62  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 121

Query: 332 IYQ------LNHDAGTMA----------SLLPVVKAESSPENVRYVHNMF---------- 391
           +Y+       + D  T            SLL  ++   S   V   +N+F          
Sbjct: 122 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 181

Query: 392 ------------EKMARKSLVSWNVMIAIYVLDDEADRLLNV 396
                         M  K +V+WN M+A Y  +   D  L+V
Sbjct: 182 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218

[Close]
BLAST of Cp4.1LG11g07330 vs. NCBI nr
Match: gi|255545098|ref|XP_002513610.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Ricinus communis])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 66/186 (35.48%), Postives = 107/186 (57.53%), Query Frame = 1 

Query: 236 FNSSKVELFSKEVCEIILDKYPDLKTLNKLHSKIIVNEHLRIDPTLAIKLMRAYSANGVT 295
           F +++   F++++C  ILD+YPD+ TL KLH K++ +++LR +P++ IKLMR Y+A G  
Sbjct: 11  FATARQLSFTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEP 70

Query: 296 RVARYIFDRTLEKNVVFFNVMIRSYVNNNLYVEALSIYQLNHDAGTMASLLP---VVKAE 355
            +AR+IFD   +KNVVFFNVMIRSYVNN+LY +AL +Y+  +  G +  +     V+KA 
Sbjct: 71  GLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKAS 130

Query: 356 SSPENV------------------RYVHN-----------------MFEKMARKSLVSWN 384
           S  +++                   YV N                 + +++  + +VSWN
Sbjct: 131 SRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWN 190

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g07330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP271_ARATH2.3e-1430.22Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
RH10_ARATH1.0e-0953.66DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2[more]
RH10_ORYSJ1.6e-0741.46DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica GN=Os03g0... [more]
PPR84_ARATH1.6e-0729.60Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG11g07330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE24_CUCSA1.0e-4552.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404230 PE=4 SV=1[more]
V4RM67_9ROSI1.6e-2235.14Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006441mg PE=4 SV=1[more]
A0A067EM74_CITSI1.6e-2235.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008276mg PE=4 SV=1[more]
B9RIP1_RICCO8.1e-2235.48Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A0D2NVJ3_GOSRA1.4e-2140.70Uncharacterized protein OS=Gossypium raimondii GN=B456_006G199900 PE=4 SV=1[more]
BLAST of Cp4.1LG11g07330 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49142.11.3e-1530.22 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G60990.15.7e-1153.66 DEA(D/H)-box RNA helicase family protein[more]
AT1G56690.19.2e-0929.60 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G35030.11.1e-0629.82 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG11g07330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458017|ref|XP_004146744.1|1.5e-4552.42PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Cucum... [more]
gi|659113231|ref|XP_008456467.1|2.0e-4562.50PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Cucum... [more]
gi|641837207|gb|KDO56163.1|2.3e-2235.14hypothetical protein CISIN_1g008276mg [Citrus sinensis][more]
gi|567858820|ref|XP_006422093.1|2.3e-2235.14hypothetical protein CICLE_v10006441mg [Citrus clementina][more]
gi|255545098|ref|XP_002513610.1|1.2e-2135.48PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Ricin... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g07330.1Cp4.1LG11g07330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 311..334
score: 0.
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 381..427
score: 2.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 255..384
score: 9.5E-28coord: 201..226
score: 9.5
NoneNo IPR availablePANTHERPTHR24015:SF397SUBFAMILY NOT NAMEDcoord: 255..384
score: 9.5E-28coord: 201..226
score: 9.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g07330CmoCh05G009530Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g07330MELO3C019783.2Melon (DHL92) v3.6.1cpemedB113
Cp4.1LG11g07330CsaV3_6G036270Cucumber (Chinese Long) v3cpecucB0135
Cp4.1LG11g07330CsGy6G020470Cucumber (Gy14) v2cgybcpeB717
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g07330Cucurbita pepo (Zucchini)cpecpeB149
Cp4.1LG11g07330Cucumber (Gy14) v1cgycpeB0088
Cp4.1LG11g07330Cucurbita maxima (Rimu)cmacpeB181
Cp4.1LG11g07330Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g07330Cucurbita moschata (Rifu)cmocpeB155
Cp4.1LG11g07330Wild cucumber (PI 183967)cpecpiB119
Cp4.1LG11g07330Cucumber (Chinese Long) v2cpecuB121
Cp4.1LG11g07330Bottle gourd (USVL1VR-Ls)cpelsiB099
Cp4.1LG11g07330Watermelon (Charleston Gray)cpewcgB123
Cp4.1LG11g07330Watermelon (97103) v1cpewmB100
Cp4.1LG11g07330Melon (DHL92) v3.5.1cpemeB090
Cp4.1LG11g07330Silver-seed gourdcarcpeB0191