Cp4.1LG11g07160 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Aspartic proteinase-like protein 2
Location	Cp4.1LG11 : 5276793 .. 5277038 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGCAAGACTTGCCGTAGTGAGCTTCTTGCTGGTGATTTCGTTTTTGTCTATTGGGGATTGCAATTTGGTGTTCAATGTTCATCACAAGTTCAAGGGCCGCGAGAGGTCCTTGGAAGCCTTCAAAGCCCACGATGTTCTCCGTCGCGGTAGATTTCTTTCTGCTATTGATCTCAACTTGGGCGGCAACGGACACCCTTCTGAATCTGGGTTAGTCTTGATTTCTGTTGTGGTTATTTAG

mRNA sequence

ATGGAGATTGCAAGACTTGCCGTAGTGAGCTTCTTGCTGGTGATTTCGTTTTTGTCTATTGGGGATTGCAATTTGGTGTTCAATGTTCATCACAAGTTCAAGGGCCGCGAGAGGTCCTTGGAAGCCTTCAAAGCCCACGATGTTCTCCGTCGCGGTAGATTTCTTTCTGCTATTGATCTCAACTTGGGCGGCAACGGACACCCTTCTGAATCTGGGTTAGTCTTGATTTCTGTTGTGGTTATTTAG

Coding sequence (CDS)

ATGGAGATTGCAAGACTTGCCGTAGTGAGCTTCTTGCTGGTGATTTCGTTTTTGTCTATTGGGGATTGCAATTTGGTGTTCAATGTTCATCACAAGTTCAAGGGCCGCGAGAGGTCCTTGGAAGCCTTCAAAGCCCACGATGTTCTCCGTCGCGGTAGATTTCTTTCTGCTATTGATCTCAACTTGGGCGGCAACGGACACCCTTCTGAATCTGGGTTAGTCTTGATTTCTGTTGTGGTTATTTAG

Protein sequence

MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDLNLGGNGHPSESGLVLISVVVI

Homology

[Close]

BLAST of Cp4.1LG11g07160 vs. Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-08
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 1  MEIAR---LAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSA 60
          ME+ R   + V  F++VI F S    N VF   HKF G++++LE FK+HD  R  R L++
Sbjct: 1  MELRRKLCIVVAVFVIVIEFAS---ANFVFKAQHKFAGKKKNLEHFKSHDTRRHSRMLAS 60

Query: 61 IDLNLGGNGHPSESGLVLISV 79
          IDL LGG+      GL    +
Sbjct: 61 IDLPLGGDSRVDSVGLYFTKI 78

[Close]

BLAST of Cp4.1LG11g07160 vs. TrEMBL
Match: A0A0A0LJW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G099480 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-26
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          MEIAR AVVSF LVISF S GDCNLV  V HKFKGRERSLEAFKAHD+ RRGRFLSAIDL
Sbjct: 1  MEIARFAVVSFFLVISFFSSGDCNLVLKVQHKFKGRERSLEAFKAHDIQRRGRFLSAIDL 60

Query: 61 NLGGNGHPSESGLVLISV 79
           LGGNGHPSESGL    +
Sbjct: 61 QLGGNGHPSESGLYFAKI 78

[Close]

BLAST of Cp4.1LG11g07160 vs. TrEMBL
Match: A0A0A0M011_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651140 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-16
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          M++ R  +V  LL++SF   G CNLVF V HKFKGRERSL A K+HDV R GR LS IDL
Sbjct: 1  MDLEREVLVG-LLLLSFCLPGFCNLVFEVQHKFKGRERSLNALKSHDVRRHGRLLSVIDL 60

Query: 61 NLGGNGHPSESGL 74
           LGGNGHP+E+GL
Sbjct: 61 ELGGNGHPAETGL 72

[Close]

BLAST of Cp4.1LG11g07160 vs. TrEMBL
Match: B9RM62_RICCO (Aspartic proteinase Asp1, putative OS=Ricinus communis GN=RCOM_1077820 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDC----NLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLS 60
          M++ RLA V  L+VI  L    C    N VFNV HKF G+ERSL A K HD  R  R LS
Sbjct: 5  MDLMRLATVLSLVVIVELGFVVCLSNGNYVFNVQHKFAGKERSLSALKQHDARRHRRILS 64

Query: 61 AIDLNLGGNGHPSESGLVLISV 79
          A+DL LGGNGHP+E+GL    +
Sbjct: 65 AVDLPLGGNGHPAEAGLYFAKI 86

[Close]

BLAST of Cp4.1LG11g07160 vs. TrEMBL
Match: D7SPN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00730 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          M++ R  +   LL +   +I   N VF V HKFKGR +SL+A +AHD  R GR LSA+DL
Sbjct: 1  MDLGRWVLCFCLLALFLPTIVSGNAVFRVQHKFKGRGKSLDALRAHDTRRHGRILSAVDL 60

Query: 61 NLGGNGHPSESGLVLISV 79
           LGGNGHPSE+GL    +
Sbjct: 61 PLGGNGHPSEAGLYFAKI 78

[Close]

BLAST of Cp4.1LG11g07160 vs. TrEMBL
Match: A5B3D1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020864 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          M++ R  +   LL +   +I   N VF V HKFKGR +SL+A +AHD  R GR LSA+DL
Sbjct: 5  MDLGRWVLCFCLLALFLPTIVSGNAVFRVQHKFKGRGKSLDALRAHDTRRHGRILSAVDL 64

Query: 61 NLGGNGHPSESGLVLISV 79
           LGGNGHPSE+GL    +
Sbjct: 65 PLGGNGHPSEAGLYFAKI 82

[Close]

BLAST of Cp4.1LG11g07160 vs. TAIR10
Match: AT5G36260.1 (AT5G36260.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-09
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 1


Query: 3  IARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDLNL 62
          I+R+  V F+LVI  +S    N VFNV HKF G+E+ L   K+HD  R  R L+ IDL L
Sbjct: 10 ISRIVAVVFVLVIQVVS---GNFVFNVTHKFAGKEKQLSELKSHDSFRHARMLANIDLPL 69

Query: 63 GGNGHPSESGLVLISV 79
          GG+      GL    +
Sbjct: 70 GGDSRADSIGLYFTKI 82

[Close]

BLAST of Cp4.1LG11g07160 vs. TAIR10
Match: AT1G65240.1 (AT1G65240.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-09
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 1  MEIAR---LAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSA 60
          ME+ R   + V  F++VI F S    N VF   HKF G++++LE FK+HD  R  R L++
Sbjct: 1  MELRRKLCIVVAVFVIVIEFAS---ANFVFKAQHKFAGKKKNLEHFKSHDTRRHSRMLAS 60

Query: 61 IDLNLGGNGHPSESGLVLISV 79
          IDL LGG+      GL    +
Sbjct: 61 IDLPLGGDSRVDSVGLYFTKI 78

[Close]

BLAST of Cp4.1LG11g07160 vs. TAIR10
Match: AT3G02740.1 (AT3G02740.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-07
Identity = 28/56 (50.00%), Postives = 33/56 (58.93%), Query Frame = 1


Query: 24 NLVFNVHHKFKG-RERSLEAFKAHDVLRRGRFLSAIDLNLGGNGHPSESGLVLISV 79
          NLVF V  KF G R + L A +AHDV R  R LSAID+ LGG+  P   GL    +
Sbjct: 34 NLVFEVRSKFAGKRVKDLGALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKI 89

[Close]

BLAST of Cp4.1LG11g07160 vs. NCBI nr
Match: gi|449442281|ref|XP_004138910.1| (PREDICTED: aspartic proteinase-like protein 2 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-26
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          MEIAR AVVSF LVISF S GDCNLV  V HKFKGRERSLEAFKAHD+ RRGRFLSAIDL
Sbjct: 1  MEIARFAVVSFFLVISFFSSGDCNLVLKVQHKFKGRERSLEAFKAHDIQRRGRFLSAIDL 60

Query: 61 NLGGNGHPSESGLVLISV 79
           LGGNGHPSESGL    +
Sbjct: 61 QLGGNGHPSESGLYFAKI 78

[Close]

BLAST of Cp4.1LG11g07160 vs. NCBI nr
Match: gi|659082210|ref|XP_008441721.1| (PREDICTED: aspartic proteinase-like protein 2 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 7.2e-23
Identity = 60/78 (76.92%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          MEI R AVVSF LV  FLS  DCNLVF V HKFKGRERSL+AFKAHD+ RRGRFLSAIDL
Sbjct: 1  MEIPRFAVVSFFLV--FLSSVDCNLVFKVQHKFKGRERSLQAFKAHDIHRRGRFLSAIDL 60

Query: 61 NLGGNGHPSESGLVLISV 79
           LGGNGHPSESGL    +
Sbjct: 61 QLGGNGHPSESGLYFAKI 76

[Close]

BLAST of Cp4.1LG11g07160 vs. NCBI nr
Match: gi|449442641|ref|XP_004139089.1| (PREDICTED: aspartic proteinase-like protein 2 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          M++ R  +V  LL++SF   G CNLVF V HKFKGRERSL A K+HDV R GR LS IDL
Sbjct: 1  MDLEREVLVG-LLLLSFCLPGFCNLVFEVQHKFKGRERSLNALKSHDVRRHGRLLSVIDL 60

Query: 61 NLGGNGHPSESGL 74
           LGGNGHP+E+GL
Sbjct: 61 ELGGNGHPAETGL 72

[Close]

BLAST of Cp4.1LG11g07160 vs. NCBI nr
Match: gi|659085859|ref|XP_008443647.1| (PREDICTED: aspartic proteinase-like protein 2 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-16
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDCNLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLSAIDL 60
          M++ R  +V  LL +SF   G CNLVF V HKFKGRERSL A K+HDV R GR LS IDL
Sbjct: 1  MDLEREVLVGMLL-LSFCIPGFCNLVFEVQHKFKGRERSLNALKSHDVRRHGRLLSVIDL 60

Query: 61 NLGGNGHPSESGL 74
           LGGNGHP+E+GL
Sbjct: 61 ELGGNGHPAETGL 72

[Close]

BLAST of Cp4.1LG11g07160 vs. NCBI nr
Match: gi|255547548|ref|XP_002514831.1| (PREDICTED: aspartic proteinase-like protein 2 [Ricinus communis])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 1  MEIARLAVVSFLLVISFLSIGDC----NLVFNVHHKFKGRERSLEAFKAHDVLRRGRFLS 60
          M++ RLA V  L+VI  L    C    N VFNV HKF G+ERSL A K HD  R  R LS
Sbjct: 5  MDLMRLATVLSLVVIVELGFVVCLSNGNYVFNVQHKFAGKERSLSALKQHDARRHRRILS 64

Query: 61 AIDLNLGGNGHPSESGLVLISV 79
          A+DL LGGNGHP+E+GL    +
Sbjct: 65 AVDLPLGGNGHPAEAGLYFAKI 86

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ASPL2_ARATH	2.9e-08	40.74	Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=...	[more]

BLAST of Cp4.1LG11g07160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJW2_CUCSA	2.2e-26	80.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G099480 PE=3 SV=1	[more]
A0A0A0M011_CUCSA	2.7e-16	64.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651140 PE=3 SV=1	[more]
B9RM62_RICCO	1.0e-12	53.66	Aspartic proteinase Asp1, putative OS=Ricinus communis GN=RCOM_1077820 PE=3 SV=1	[more]
D7SPN2_VITVI	1.4e-12	51.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00730 PE=3 SV=...	[more]
A5B3D1_VITVI	1.4e-12	51.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020864 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g07160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G36260.1	1.3e-09	43.42	Eukaryotic aspartyl protease family protein	[more]
AT1G65240.1	1.6e-09	40.74	Eukaryotic aspartyl protease family protein	[more]
AT3G02740.1	1.5e-07	50.00	Eukaryotic aspartyl protease family protein	[more]

BLAST of Cp4.1LG11g07160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442281\|ref\|XP_004138910.1\|	3.1e-26	80.77	PREDICTED: aspartic proteinase-like protein 2 [Cucumis sativus]	[more]
gi\|659082210\|ref\|XP_008441721.1\|	7.2e-23	76.92	PREDICTED: aspartic proteinase-like protein 2 [Cucumis melo]	[more]
gi\|449442641\|ref\|XP_004139089.1\|	3.8e-16	64.38	PREDICTED: aspartic proteinase-like protein 2 [Cucumis sativus]	[more]
gi\|659085859\|ref\|XP_008443647.1\|	5.0e-16	64.38	PREDICTED: aspartic proteinase-like protein 2 [Cucumis melo]	[more]
gi\|255547548\|ref\|XP_002514831.1\|	1.5e-12	53.66	PREDICTED: aspartic proteinase-like protein 2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004190	aspartic-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR001461	Aspartic_peptidase_A1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07160.1	Cp4.1LG11g07160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001461	Aspartic peptidase A1 family	PANTHER	PTHR13683	ASPARTYL PROTEASES	coord: 1..70 score: 1.4
None	No IPR available	PANTHER	PTHR13683:SF287	ASPARTIC PROTEINASE-LIKE PROTEIN 2-RELATED	coord: 1..70 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g07160	MELO3C008559.2	Melon (DHL92) v3.6.1	cpemedB125
Cp4.1LG11g07160	CsaV3_2G010550	Cucumber (Chinese Long) v3	cpecucB0118
Cp4.1LG11g07160	Bhi06G000784	Wax gourd	cpewgoB0117
Cp4.1LG11g07160	CsGy2G008430	Cucumber (Gy14) v2	cgybcpeB171
Cp4.1LG11g07160	Carg20429	Silver-seed gourd	carcpeB0980
Cp4.1LG11g07160	Carg25820	Silver-seed gourd	carcpeB1485

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g07160	Cp4.1LG02g12240	Cucurbita pepo (Zucchini)	cpecpeB126

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07160	Cucumber (Gy14) v1	cgycpeB0533
Cp4.1LG11g07160	Cucurbita maxima (Rimu)	cmacpeB462
Cp4.1LG11g07160	Cucurbita maxima (Rimu)	cmacpeB766
Cp4.1LG11g07160	Cucurbita maxima (Rimu)	cmacpeB768
Cp4.1LG11g07160	Cucurbita moschata (Rifu)	cmocpeB422
Cp4.1LG11g07160	Cucurbita moschata (Rifu)	cmocpeB725
Cp4.1LG11g07160	Wild cucumber (PI 183967)	cpecpiB103
Cp4.1LG11g07160	Cucumber (Chinese Long) v2	cpecuB098
Cp4.1LG11g07160	Cucumber (Chinese Long) v2	cpecuB107
Cp4.1LG11g07160	Bottle gourd (USVL1VR-Ls)	cpelsiB077
Cp4.1LG11g07160	Watermelon (Charleston Gray)	cpewcgB095
Cp4.1LG11g07160	Watermelon (Charleston Gray)	cpewcgB096
Cp4.1LG11g07160	Watermelon (Charleston Gray)	cpewcgB098
Cp4.1LG11g07160	Watermelon (97103) v1	cpewmB120
Cp4.1LG11g07160	Melon (DHL92) v3.5.1	cpemeB101