Cp4.1LG11g01540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g01540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG11 : 823753 .. 824151 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAGCTCTTCGTAGTTGCTTTTGTGGCCTCTCCTTCATTCTTGGTTTGCTGTTATTGTCTTCCTCGTTGGGCTCAGAAGCTCTCACAAGCAAAAGCATACTCAATTGTCAAACAAACCCTAAACCAAATAATAAAACTACAAGAATTGGAGTTGTCTTCGACAGTGGCTCTCAACTTGGGAAGCAACAGATGGTAGCAATGAAGATGGGTTTAAGCCACTTTCATTTGTCTTCTTCCTGTCTCAAGCTGGAGCTTCTCCTCCATGATTCTCATCAAAACCTCACTTCACCACCTTCTTCTGGTAATCTCTTACTCTTTCTTTTCATGTCCATAATTGCAACAACATGCTACTTATCATCATTGTCTACCCGAGTTTACTTACAAGAATTATGA

mRNA sequence

ATGGCAAAAGCTCTTCGTAGTTGCTTTTGTGGCCTCTCCTTCATTCTTGGTTTGCTGTTATTGTCTTCCTCGTTGGGCTCAGAAGCTCTCACAAGCAAAAGCATACTCAATTGTCAAACAAACCCTAAACCAAATAATAAAACTACAAGAATTGGAGTTGTCTTCGACAGTGGCTCTCAACTTGGGAAGCAACAGATGGTAGCAATGAAGATGGGTTTAAGCCACTTTCATTTGTCTTCTTCCTGTCTCAAGCTGGAGCTTCTCCTCCATGATTCTCATCAAAACCTCACTTCACCACCTTCTTCTGGTAATCTCTTACTCTTTCTTTTCATGTCCATAATTGCAACAACATGCTACTTATCATCATTGTCTACCCGAGTTTACTTACAAGAATTATGA

Coding sequence (CDS)

ATGGCAAAAGCTCTTCGTAGTTGCTTTTGTGGCCTCTCCTTCATTCTTGGTTTGCTGTTATTGTCTTCCTCGTTGGGCTCAGAAGCTCTCACAAGCAAAAGCATACTCAATTGTCAAACAAACCCTAAACCAAATAATAAAACTACAAGAATTGGAGTTGTCTTCGACAGTGGCTCTCAACTTGGGAAGCAACAGATGGTAGCAATGAAGATGGGTTTAAGCCACTTTCATTTGTCTTCTTCCTGTCTCAAGCTGGAGCTTCTCCTCCATGATTCTCATCAAAACCTCACTTCACCACCTTCTTCTGGTAATCTCTTACTCTTTCTTTTCATGTCCATAATTGCAACAACATGCTACTTATCATCATTGTCTACCCGAGTTTACTTACAAGAATTATGA

Protein sequence

MAKALRSCFCGLSFILGLLLLSSSLGSEALTSKSILNCQTNPKPNNKTTRIGVVFDSGSQLGKQQMVAMKMGLSHFHLSSSCLKLELLLHDSHQNLTSPPSSGNLLLFLFMSIIATTCYLSSLSTRVYLQEL
Homology
[Close]
BLAST of Cp4.1LG11g01540 vs. TrEMBL
Match: A0A0A0LKV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357230 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21
Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 1 

Query: 9   FCGLSFILGLLLLSSSLGSEALTSKSILN-CQTNPKPNNKTTRIGVVFDSGSQLGKQQMV 68
           FC  SF LGL+ L   LGSEA  ++  LN CQ N   NN T RIGVVFDSGSQ+GKQQ+V
Sbjct: 6   FCCSSFFLGLVFLVLFLGSEAHKNQKELNYCQRNLAINNGTARIGVVFDSGSQIGKQQIV 65

Query: 69  AMKMGLSHFHL-SSSCLKLELLLHDSHQNLTSPPSSGN 105
           A+KMGL  FHL SSSC KLELLLHDSH N TS PSS N
Sbjct: 66  AIKMGLRDFHLASSSCAKLELLLHDSHPNSTSSPSSSN 103

[Close]
BLAST of Cp4.1LG11g01540 vs. NCBI nr
Match: gi|700207381|gb|KGN62500.1| (hypothetical protein Csa_2G357230 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-21
Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 1 

Query: 9   FCGLSFILGLLLLSSSLGSEALTSKSILN-CQTNPKPNNKTTRIGVVFDSGSQLGKQQMV 68
           FC  SF LGL+ L   LGSEA  ++  LN CQ N   NN T RIGVVFDSGSQ+GKQQ+V
Sbjct: 6   FCCSSFFLGLVFLVLFLGSEAHKNQKELNYCQRNLAINNGTARIGVVFDSGSQIGKQQIV 65

Query: 69  AMKMGLSHFHL-SSSCLKLELLLHDSHQNLTSPPSSGN 105
           A+KMGL  FHL SSSC KLELLLHDSH N TS PSS N
Sbjct: 66  AIKMGLRDFHLASSSCAKLELLLHDSHPNSTSSPSSSN 103

[Close]
BLAST of Cp4.1LG11g01540 vs. NCBI nr
Match: gi|778674308|ref|XP_011650184.1| (PREDICTED: glutamate receptor 2.5-like [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 9   FCGLSFILGLLLLSSSLGSEALTSKSILN-CQTNPKPNNKTTRIGVVFDSGSQLGKQQMV 68
           FC  SF LGL+ L   LGSEA  ++  LN CQ N   NN T RIGVVFDSGSQ+GKQQ+V
Sbjct: 6   FCCSSFFLGLVFLVLFLGSEAHKNQKELNYCQRNLAINNGTARIGVVFDSGSQIGKQQIV 65

Query: 69  AMKMGLSHFHL-SSSCLKLELLLHDSHQNLTSPPSS 103
           A+KMGL  FHL SSSC KLELLLHDSH N TS PSS
Sbjct: 66  AIKMGLRDFHLASSSCAKLELLLHDSHPNSTSSPSS 101

[Close]
BLAST of Cp4.1LG11g01540 vs. NCBI nr
Match: gi|659087747|ref|XP_008444615.1| (PREDICTED: glutamate receptor 2.5-like [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 64/97 (65.98%), Postives = 72/97 (74.23%), Query Frame = 1 

Query: 9   FCGLSFILGLLLLSSSLGSEALTSKSILN-CQTNPKPNNKTTR-IGVVFDSGSQLGKQQM 68
           F G SF LGL+ L   LGSEA T++  LN CQ N   NN T R IG+V DSGSQ+GKQQ+
Sbjct: 6   FWGSSFFLGLVFLVLFLGSEAHTNQKELNYCQKNLAINNVTARIIGLVSDSGSQIGKQQI 65

Query: 69  VAMKMGLSHFHL-SSSCLKLELLLHDSHQNLTSPPSS 103
           VA+KMGL  F L SSSC+KLELLLHDSH NLTS PSS
Sbjct: 66  VAIKMGLRDFSLASSSCVKLELLLHDSHPNLTSSPSS 102

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g01540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g01540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKV1_CUCSA1.2e-2167.35Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357230 PE=4 SV=1[more]
BLAST of Cp4.1LG11g01540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g01540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207381|gb|KGN62500.1|1.7e-2167.35hypothetical protein Csa_2G357230 [Cucumis sativus][more]
gi|778674308|ref|XP_011650184.1|1.1e-2067.71PREDICTED: glutamate receptor 2.5-like [Cucumis sativus][more]
gi|659087747|ref|XP_008444615.1|2.3e-1865.98PREDICTED: glutamate receptor 2.5-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g01540.1Cp4.1LG11g01540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g01540Csa2G357230Cucumber (Chinese Long) v2cpecuB096
Cp4.1LG11g01540CsaV3_2G026640Cucumber (Chinese Long) v3cpecucB0106
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g01540Bottle gourd (USVL1VR-Ls)cpelsiB085
Cp4.1LG11g01540Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g01540Watermelon (Charleston Gray)cpewcgB113
Cp4.1LG11g01540Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g01540Watermelon (97103) v1cpewmB101
Cp4.1LG11g01540Watermelon (97103) v1cpewmB108
Cp4.1LG11g01540Melon (DHL92) v3.5.1cpemeB091
Cp4.1LG11g01540Melon (DHL92) v3.5.1cpemeB107
Cp4.1LG11g01540Cucumber (Gy14) v2cgybcpeB161
Cp4.1LG11g01540Cucumber (Gy14) v2cgybcpeB478
Cp4.1LG11g01540Cucumber (Gy14) v2cgybcpeB719
Cp4.1LG11g01540Cucumber (Gy14) v2cgybcpeB896
Cp4.1LG11g01540Melon (DHL92) v3.6.1cpemedB103
Cp4.1LG11g01540Melon (DHL92) v3.6.1cpemedB115
Cp4.1LG11g01540Melon (DHL92) v3.6.1cpemedB132
Cp4.1LG11g01540Melon (DHL92) v3.6.1cpemedB135
Cp4.1LG11g01540Silver-seed gourdcarcpeB0112
Cp4.1LG11g01540Silver-seed gourdcarcpeB0263
Cp4.1LG11g01540Silver-seed gourdcarcpeB0556
Cp4.1LG11g01540Silver-seed gourdcarcpeB1078
Cp4.1LG11g01540Cucumber (Chinese Long) v3cpecucB0127
Cp4.1LG11g01540Cucumber (Chinese Long) v3cpecucB0136
Cp4.1LG11g01540Wax gourdcpewgoB0141
Cp4.1LG11g01540Wax gourdcpewgoB0150
Cp4.1LG11g01540Wax gourdcpewgoB0157
Cp4.1LG11g01540Cucurbita pepo (Zucchini)cpecpeB062
Cp4.1LG11g01540Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG11g01540Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG11g01540Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG11g01540Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG11g01540Cucumber (Gy14) v1cgycpeB0919
Cp4.1LG11g01540Cucumber (Gy14) v1cgycpeB1039
Cp4.1LG11g01540Cucurbita maxima (Rimu)cmacpeB030
Cp4.1LG11g01540Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g01540Cucurbita maxima (Rimu)cmacpeB460
Cp4.1LG11g01540Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g01540Cucurbita moschata (Rifu)cmocpeB006
Cp4.1LG11g01540Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g01540Cucurbita moschata (Rifu)cmocpeB420
Cp4.1LG11g01540Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g01540Cucurbita moschata (Rifu)cmocpeB809
Cp4.1LG11g01540Wild cucumber (PI 183967)cpecpiB092
Cp4.1LG11g01540Wild cucumber (PI 183967)cpecpiB112
Cp4.1LG11g01540Cucumber (Chinese Long) v2cpecuB116