Cp4.1LG11g00990 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g00990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBenign gonial cell neoplasm
LocationCp4.1LG11 : 499958 .. 505811 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACATCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGCCCGCCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAGAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCCAACCCGACGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGGTAAGAAATTATAATTTACTATTTAATCCATCCTTAATATTTTAGGTAATTAGATTTTTTTTTTTAATCTGTTGAGGAAAAGTTTGATAATTATTAAATTATGATTTTATTAATATATCTAAAATTTAAGCTCTATTTAATTTTTATTTCTGATTATTTAAAATTTTATTTGTTTTCTCGTTATTTCTTTACAATTAATTTAATCTTTTTGTAATAAAATATTAGAATTCTTGTAAACGACACTAAAATGTCAGTGTCGTGGTCGGACCCACTGATTAAATCCTCGTGATTAAGAAGCTTATTATATATAATTAGTAATTAATGTAGTCAATTAACTCTTAACAAAATTAGTTAGTTAATTAATTAACTGAGTTTTGAACATTAATCCCAAGCTAAGCATGCGTGGAGTAAAAGCCAAGAACATTCGTTCAATATTATTTAACGCTTCTTTTAAGGATGTTTTTTTTCCTCCACCTAATTTCAACCCTTAATTCCCATTCAAAAATTTGTATTATTGGATAATGAAGTCGTGAGCATCATGATTTTAAAACGAGGTTAGAGGGAAGTTCTACTTCCTATAAGAAATGTTTCGTTTTCCTCTCCAACTGATCTAAGATCTCACAATCTACCCTATCGGAGACTTAGCATCCTCACTGGCACATCATCCCGTGCCTGGTTCTCAACCTATTTGTAACAGTCCAAGCTCATCACAATCTACCCTATCGGAGACTTAGCATCCTCACTGGCACATCACCCCGTGCTTGGTTCTCAACCTATTTGTAACAGTCCAAGCTCATCGCTAGTAGATATTGTCTGTTTTGACTCATTACGTATCGCTGTCAGCCTCACGATTTTAAAGGATATTTGGGAGAGGTTTCCCACACCCCTCTGATGAGTGTTTGTTCCCCTATCTAACCGATATGGGACCTAACAATCCACCCCCTAGAGGGCCAACATCCTTGATGGCACACCGCCTGAAACTTGGCTCGGATATCATTTGTAACAGCCCAAACCCCATTGTTAGTAGATATTGTCTATTTTGGCCCATTACATATTGTTGTCAGCCTCACGATCTTAAAGCACATTTTCTTATGCTATGGAGAGGTTTTCACACCCCTTGTAAGGAATGTTTGTTCTCTTCTACAACCGATGTGGGACCTAACAATCCACCCCTTAGGGGGCTAACATCCTCGGTGGCACATCGCTCGAAACTTGGCTCGGATATTATTTGTAACAGCCAAAGCCCACTGTTAGTAGACATGGTCTGTTTTGATCCGCTCTCTCTCCCCCTTCCCACCATCTCACCCTCCTCCCCTTTCCGACCTACCCTGATGGCTCCTTCCTTTGTAATGCCTGTCGTGTCATTAGCACCGCTTTCTGTTTCTCCTGCATCCTCTACGACATTAACTTTCATGGTGATTGCACCATGTTACCGCAACAACTCAACTCGAGTCTCAATATTGGGGTTACAGTTGCTCGTCTTGTAACTGTCATGTTCATACTTATTGTGCCACAGCCAAGGCTGAGCCGCCAGAAATGATTCGTACGTGTATTTTGCGACGGTCGGGGAGGAGGGTACCGGTGGAGCACCGGCAGCGGCAGAAGAGAGTCCAACGGTGGTGTTGGTGGATCCGATTCTGAAGGCGCAGGCGGAGCTGCATGAGATGGCCAAGATGATGGCGTCCGTTAACTTGAGTTCTCTTGTGTGAATATAATTAATGCATGCTTTATTTATATGATTTGTTTATATATTGTATGCATTATGTCGTTCAATTATTTCAATTCAAATATGCTTATTTTCAAACATATATATTAAAAAAATAATAGTATGTATAGTAATTATCGATTATTTTAAGCTTTCATAACAATATTTTTCTTTAACAAATTTTAAAGAGGGTCACGACACGTTTATTATAGAGAAGGTCTAGCCCTACTCCAACCAGTATCGAACGTTTCATAACAATATTTACTAGCGGTGAGCTTGAGCGGTAACAAGTAGTAACTTTTGATTGGTTGATCTTATTTTGCGACTTAACCTTGTAGAATAGGTTTAAAAAATAAATCATATTTAAAATATCATTATAATCGATATTTTGGTATGTTTTATTTTTGTGGTACGGTTTTTCATTTAATTTTAAGGAGGTGATAATTTTATTAGGGAGAGGTGCGAGTTTGATGCGGAAACTAGCAATGGGGTTGTTCCACAATCCACCTCTTCACCTCAAGGTCTCACCTTTTTCTCATCATCCCACTCTTCTTTGTTCTTGTGTTGTTTGCCTTTCATCATTTGATGCACCAAATCATATCATTATCATTGGTAGATAGTAACTTTAGATCTCATGGAATAATGTAACGAGACGATCTGGGTTATTCTCGATTTATCGTTTCATAGTGATTTGACTTAGTATCGTGGTGTAAAATCCTACATCTAACCTCGTGGAAACGAGAGCATCTGGGTTATTCTCGACTTATCGTTTAGTAGTGATTTGACATAGTATCGTGGTGTAAAATCCTACATCTAATCTCGTGGAATGTTGTCGTCTTCTCCGTAATTAATGTTAAGAGTAACTAGCTTGTTTCCATTACTTCTCCGTAAAGGCTTGACTTGTAGAGAGTAGTATTTCAAATCTATGTCGGAATTAGCCAGTGCAAAGATGATCATTGATACTGGGTGTTCGGATAACATAGAGTCTACGGGGATGGTGGATCAGTTAGGGTAAACTATGCAAAAAAAACCGTTGATTTTTATCGGTTTAGTAACAACTTGGACGAAATGGGGTTCTACAAAAAGTGGTCTAGTATTTCGGGACTTGAGTTATATCGTGATAACTTATAACGTTACTCGTTGGAGTACGTTTACTCATCTGGGTTTTGTGTTGGCTTATCAAAGTTCTAACCTTTTTAGAAGTTTTGTAGTGTTCGTTTTGATTGGTTTTCGTGAAATCTTGTGGGAGACTTCCTCTGATCGCGATACATCATCACTTAGCTCATTTGAACGTGTGATCGAAGAATTTTATTTGTTCGAACTTGACAATTAAATCGAACATATCATGAGCTATGAACTTGAGTGATAGCTGAATTGGTTGTTTGTTGTAGTGGTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACATCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGCCCGCCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAGAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCCAACCCGACGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGGTAAGAAATTATAATTTACTATTTAATCCATCCTTAATATTTTAGGTAATTAGATTTTTTTTTTTAATCTGTTGAGGAAAAGTTTGATAATTATTAAATTATGATTTTATTAATATATCTAAAATTTAAGCTCTATTTAATTTTTATTTCTGATTATTTAAAATTTTATTTGTTTTCTCGTTATTTCTTTACAATTAATTTAATCTTTTTGTAATAAAATATTAGAATTCTTGTAAACGACACTAAAATGTCAGTGTCGTGGTCGGACCCACTGATTAAATCCTCGTGATTAAGAAGCTTATTATATATAATTAGTAATTAATGTAGTCAATTAACTCTTAACAAAATTAGTTAGTTAATTAATTAACTGAGTTTTGAACATTAATCCCAAGCTAAGCATGCGTGGAGTAAAAGCCAAGAACATTCGTTCAATATTATTTAACGCTTCTTTTAAGGATGTTTTTTTTTTCTCCACCTAATTTCAACCCTTAATTCCGATTCAAAAATTTGTATTATTGGATAATGAAGTTGTGAGCCTCGTGATTTTAAAACGAGGTTAGAGGGAAGTTCTACTTCCTATAAGAAATGTTTCGTTCTCCTCTCTAACTGATCTAAGATCTCACAATCTACCCTATCGGAGACTTAGCATCCTCACTGGCACATCATCCCGTGCCTGGTTCTCAACCTATTTGTAACTGTCCAAGCTCATCACAATCTACCCTATCGGAGACTTAGCATCCTCACTGGCACATCACCCCGTGCCTGGTTCTCAACCTATTTGTAACAGTCCAAGCTCATCGCTAGTAGATATTGTCTGTTTTGACTCATTACGTATCGCTGTCAACCTCACGATTTTAAAGGGTATTTGGGAGAGGTTTCCCACACCCCTCTGATGAGTGTTTGTTCCCCTATCCAACCAATATGGGACCTAACAATCCACCCCCTAGAGGGCCAACATCCTTGATGGCACACCGCCTGAAACTTGGCTCGGATATTATTTGTAACAACCCAAACCCCATTGTTAGTAGATATTGTATGTTTTGGCCCATTACATATTGTTGTCAGCCTCACGATCTTAAAGCGCATTTGCTATGCTATGGAGAGGTTTCCACACCCCTTGTAAGGAATGTTTGTTCTCTTGTCCAACCGATGTGGGACCTAACAATCCACCCCTTAGGGGGCTAACATCCTTGGTGGCACACCACTCGAAACTTGGCTCGGATATTATTTGTAACAGCCAAAGCCCACTGTTAGTAGACATGGTCCGTTTTGATCCGCTCTCTCTCACCCTTCCCACCATCTCACCCTCCTCCCCTTTTCGACCTACCCTGATGGCTCCTTCCTTTGTAATGCCTGCCGTGTCATTAGCACCGCCTTCTGTTTCTCCTGCATCCTCTACGACATTAACTTTCATGGTGATTGCACCATGTTACTGCAACAACTCAACTCGAGTCTCAATATTGGGGTTACAGTTGCTCGTCTTGTAACTGTCATGTTCATACCTATTACGCCACAGCCGAGGCTGAGGCGCCAGTTGGTGGCGTGAGAAATGATTCGTACGTGTAGTTTGCAACGGTTGGGGAGGAGGGTACCGGTGGAGCACCGGCAGCCGTAGAAGAGAGTCCAACGGTGGTGTTGGTGGATCCGATTCTGAAGGCGCAGGCGGAGCTGCATGAGATGGCCAAGATGATGGCGTCCGTTAACTTGAGTTCTCTTGTGTGA

mRNA sequence

GTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACATCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGCCCGCCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAGAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCCAACCCGACGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGTGGTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACATCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGCCCGCCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAGAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCCAACCCGACGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGCACCGCCTTCTGTTTCTCCTGCATCCTCTACGACATTAACTTTCATGTTTGCAACGGTTGGGGAGGAGGGTACCGGTGGAGCACCGGCAGCCGTAGAAGAGAGTCCAACGGTGGTGTTGGTGGATCCGATTCTGAAGGCGCAGGCGGAGCTGCATGAGATGGCCAAGATGATGGCGTCCGTTAACTTGAGTTCTCTTGTGTGA

Coding sequence (CDS)

GTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACATCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGCCCGCCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAGAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCCAACCCGACGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGTGGTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACATCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGCCCGCCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAGAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCCAACCCGACGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGCACCGCCTTCTGTTTCTCCTGCATCCTCTACGACATTAACTTTCATGTTTGCAACGGTTGGGGAGGAGGGTACCGGTGGAGCACCGGCAGCCGTAGAAGAGAGTCCAACGGTGGTGTTGGTGGATCCGATTCTGAAGGCGCAGGCGGAGCTGCATGAGATGGCCAAGATGATGGCGTCCGTTAACTTGAGTTCTCTTGTGTGA

Protein sequence

VGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSSPATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGVMAVAPPPPLPPTPPDDNIDVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSSPATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGVMAVAPPPPLPPTPPDDNIDAPPSVSPASSTTLTFMFATVGEEGTGGAPAAVEESPTVVLVDPILKAQAELHEMAKMMASVNLSSLV
Homology
[Close]
BLAST of Cp4.1LG11g00990 vs. TrEMBL
Match: A0A0A0LGX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.1e-44
Identity = 125/213 (58.69%), Postives = 145/213 (68.08%), Query Frame = 1 

Query: 2   GRWGEREREFPLKKRR----------SDDHNNNGN----------KKMKKKQ-------E 61
           GRW E+E+ FPLKKRR          +DDH+ + +          KKM K +        
Sbjct: 77  GRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLS 136

Query: 62  EHQSKMGLN-LAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 121
           + QSK+GL+ + GK++SRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS
Sbjct: 137 QKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 196

Query: 122 MNSVRSRSSPAT-----VVEKEDNKKPSPSP-------SPRPP--LTLTSKKRTKLGVVK 173
           MN+VR+RS  A      VV ++D KKPSPSP       SP PP   +LTSKKR KLGVVK
Sbjct: 197 MNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVK 256

[Close]
BLAST of Cp4.1LG11g00990 vs. TrEMBL
Match: A0A0D2QCR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G156300 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.0e-34
Identity = 92/159 (57.86%), Postives = 113/159 (71.07%), Query Frame = 1 

Query: 174 VGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQSKMGLNLAGKRKSRGGALMEGSR 233
           VG+W E E+ FPLKKRR         +++ +K+++  +    N +GK+K R GALMEGSR
Sbjct: 125 VGKWCEGEKAFPLKKRRGSF------ERIMQKKDDIINDHNYN-SGKKKGRNGALMEGSR 184

Query: 234 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSR---SSPATVVEKEDNKKPSP 293
           CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS+ SVRSR   S+      K++ + P  
Sbjct: 185 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSITSVRSRSLGSNNNNNAGKKEEQPPLS 244

Query: 294 SPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGVMAV 330
               +P +T T KKR KLG+VKARSISSLLGQ D V+AV
Sbjct: 245 KQEEKPLMTTTIKKRVKLGMVKARSISSLLGQNDNVIAV 276

[Close]
BLAST of Cp4.1LG11g00990 vs. TrEMBL
Match: B9II97_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05850g PE=4 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 4.9e-34
Identity = 101/206 (49.03%), Postives = 119/206 (57.77%), Query Frame = 1 

Query: 174 VGRWGEREREFPLKKRRSD-----------DHNNNGNKKMKKK-------------QEEH 233
           VGRWGE E+ FPLKKRR             D N     KMK K             ++E 
Sbjct: 133 VGRWGEGEKAFPLKKRRGSFERRWNEETIVDRNKKMKTKMKTKMNKKCVQQNGDNEEDEK 192

Query: 234 QSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS 293
           ++K G     K K RGGAL+EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS
Sbjct: 193 ETKEGAGSNIKAKPRGGALLEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS 252

Query: 294 VRSRSSPATVVEKEDNKKPSPSPSP-------------------------RPPLTLTSKK 331
           VRSRS   TV +K+++++ S    P                           PL + SK+
Sbjct: 253 VRSRSIATTVPKKDESEEVSSHSLPSQKKEETKGASLDDKVCVAYDEDDKEKPLVI-SKR 312

[Close]
BLAST of Cp4.1LG11g00990 vs. TrEMBL
Match: A0A0B0NLJ2_GOSAR (Benign gonial cell neoplasm OS=Gossypium arboreum GN=F383_17590 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.5e-33
Identity = 94/159 (59.12%), Postives = 111/159 (69.81%), Query Frame = 1 

Query: 174 VGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQSKMGLNLAGKRKSRGGALMEGSR 233
           VG W E E+ FPLKKRR         +++ +K+++  +    N +GK+K R GALMEGSR
Sbjct: 125 VGSWCEGEKAFPLKKRRGSF------ERIMQKKDDIINDHNYN-SGKKKGRNGALMEGSR 184

Query: 234 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSR---SSPATVVEKEDNKKPSP 293
           CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS+ SVRSR   S+      KE+  +P  
Sbjct: 185 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSITSVRSRSLGSNNNNAGMKEE--QPLL 244

Query: 294 SPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGVMAV 330
           S     PL  T KKR KLG+VKARSISSLLGQ D V+AV
Sbjct: 245 SKQEEKPLMTTIKKRVKLGMVKARSISSLLGQNDNVIAV 274

[Close]
BLAST of Cp4.1LG11g00990 vs. TrEMBL
Match: A0A067FU33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019760mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 103/212 (48.58%), Postives = 117/212 (55.19%), Query Frame = 1 

Query: 173 VVGRWGEREREFPLKKRRSDDHNNNGN-KKMKKK------------------QEEHQSKM 232
           VVGRW E E+ FPLKKR S   N+  N KKMK K                  +EE Q + 
Sbjct: 115 VVGRWREGEKAFPLKKRSSRRENDEDNFKKMKTKLNNKKFAGNDQQEQGEQEEEEEQEEQ 174

Query: 233 -------------GLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG 292
                          +   KR ++GGA+MEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG
Sbjct: 175 EEREVTKESVDNNSTSSKNKRGTKGGAIMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG 234

Query: 293 KGRLRSMNSVRSRSS---------PATVVEKEDNKKPSPSPSP----------------- 325
           KGRLRSMNSVRSRSS          +T        KP+ S SP                 
Sbjct: 235 KGRLRSMNSVRSRSSNLGSSASSNKSTATTAAATNKPAISSSPSSTTLQESKMKQELVSD 294

[Close]
BLAST of Cp4.1LG11g00990 vs. TAIR10
Match: AT2G42040.1 (AT2G42040.1 WRC (InterPro:IPR014977))

HSP 1 Score: 112.1 bits (279), Expect = 8.3e-25
Identity = 77/166 (46.39%), Postives = 94/166 (56.63%), Query Frame = 1 

Query: 166 PPDDNIDVVGRWGEREREFPLKKRRS----DDHNNNGNKKMKKKQEEHQSKMGLNLAGKR 225
           P  +++  +    + E+   L+KRR     +D+ +       ++ EE     G    GK+
Sbjct: 102 PRGESVSSIQVVEKNEKVVSLRKRRGFINFEDYED-------EEDEEASGGGGRINKGKK 161

Query: 226 KSR--GGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV---RSRSSP 285
           K++  GG L EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGR+RSMN     R     
Sbjct: 162 KAKKSGGGLEEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSMNKSGGGRGGEKK 221

Query: 286 ATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQ 323
           A VVE                     KKR KLG+VKARSISSLLGQ
Sbjct: 222 AVVVE-------------------VKKKRVKLGMVKARSISSLLGQ 241

[Close]
BLAST of Cp4.1LG11g00990 vs. NCBI nr
Match: gi|659084724|ref|XP_008443038.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45
Identity = 127/207 (61.35%), Postives = 145/207 (70.05%), Query Frame = 1 

Query: 2   GRWGEREREFPLKKRR------SDDHNNNGNK-----------------KMKKK--QEEH 61
           GRW E+E+ FPLKKRR      SD+ N++ NK                 KM KK    + 
Sbjct: 82  GRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQK 141

Query: 62  QSKMGLNLA-GKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN 121
           QSK+GL++  GK++SRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN
Sbjct: 142 QSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN 201

Query: 122 SVRSRSSPAT-----VVEKEDNKKPSPS---PSPRPP--LTLTSKKRTKLGVVKARSISS 173
           +VR+RS  A      VV ++D KKPSPS    SP PP   +LT+KKR KLGVVKARSISS
Sbjct: 202 NVRNRSLAAATPKNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKKRMKLGVVKARSISS 261

[Close]
BLAST of Cp4.1LG11g00990 vs. NCBI nr
Match: gi|659084722|ref|XP_008443037.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45
Identity = 127/207 (61.35%), Postives = 145/207 (70.05%), Query Frame = 1 

Query: 2   GRWGEREREFPLKKRR------SDDHNNNGNK-----------------KMKKK--QEEH 61
           GRW E+E+ FPLKKRR      SD+ N++ NK                 KM KK    + 
Sbjct: 89  GRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQK 148

Query: 62  QSKMGLNLA-GKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN 121
           QSK+GL++  GK++SRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN
Sbjct: 149 QSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN 208

Query: 122 SVRSRSSPAT-----VVEKEDNKKPSPS---PSPRPP--LTLTSKKRTKLGVVKARSISS 173
           +VR+RS  A      VV ++D KKPSPS    SP PP   +LT+KKR KLGVVKARSISS
Sbjct: 209 NVRNRSLAAATPKNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKKRMKLGVVKARSISS 268

[Close]
BLAST of Cp4.1LG11g00990 vs. NCBI nr
Match: gi|659084726|ref|XP_008443039.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45
Identity = 127/207 (61.35%), Postives = 145/207 (70.05%), Query Frame = 1 

Query: 2   GRWGEREREFPLKKRR------SDDHNNNGNK-----------------KMKKK--QEEH 61
           GRW E+E+ FPLKKRR      SD+ N++ NK                 KM KK    + 
Sbjct: 81  GRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQK 140

Query: 62  QSKMGLNLA-GKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN 121
           QSK+GL++  GK++SRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN
Sbjct: 141 QSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN 200

Query: 122 SVRSRSSPAT-----VVEKEDNKKPSPS---PSPRPP--LTLTSKKRTKLGVVKARSISS 173
           +VR+RS  A      VV ++D KKPSPS    SP PP   +LT+KKR KLGVVKARSISS
Sbjct: 201 NVRNRSLAAATPKNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKKRMKLGVVKARSISS 260

[Close]
BLAST of Cp4.1LG11g00990 vs. NCBI nr
Match: gi|449437904|ref|XP_004136730.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 4.4e-44
Identity = 125/213 (58.69%), Postives = 145/213 (68.08%), Query Frame = 1 

Query: 2   GRWGEREREFPLKKRR----------SDDHNNNGN----------KKMKKKQ-------E 61
           GRW E+E+ FPLKKRR          +DDH+ + +          KKM K +        
Sbjct: 78  GRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLS 137

Query: 62  EHQSKMGLN-LAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 121
           + QSK+GL+ + GK++SRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS
Sbjct: 138 QKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 197

Query: 122 MNSVRSRSSPAT-----VVEKEDNKKPSPSP-------SPRPP--LTLTSKKRTKLGVVK 173
           MN+VR+RS  A      VV ++D KKPSPSP       SP PP   +LTSKKR KLGVVK
Sbjct: 198 MNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVK 257

[Close]
BLAST of Cp4.1LG11g00990 vs. NCBI nr
Match: gi|778684741|ref|XP_011652086.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 4.4e-44
Identity = 125/213 (58.69%), Postives = 145/213 (68.08%), Query Frame = 1 

Query: 2   GRWGEREREFPLKKRR----------SDDHNNNGN----------KKMKKKQ-------E 61
           GRW E+E+ FPLKKRR          +DDH+ + +          KKM K +        
Sbjct: 77  GRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLS 136

Query: 62  EHQSKMGLN-LAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 121
           + QSK+GL+ + GK++SRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS
Sbjct: 137 QKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 196

Query: 122 MNSVRSRSSPAT-----VVEKEDNKKPSPSP-------SPRPP--LTLTSKKRTKLGVVK 173
           MN+VR+RS  A      VV ++D KKPSPSP       SP PP   +LTSKKR KLGVVK
Sbjct: 197 MNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVK 256

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g00990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g00990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGX5_CUCSA3.1e-4458.69Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1[more]
A0A0D2QCR9_GOSRA1.0e-3457.86Uncharacterized protein OS=Gossypium raimondii GN=B456_002G156300 PE=4 SV=1[more]
B9II97_POPTR4.9e-3449.03Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05850g PE=4 SV=2[more]
A0A0B0NLJ2_GOSAR2.5e-3359.12Benign gonial cell neoplasm OS=Gossypium arboreum GN=F383_17590 PE=4 SV=1[more]
A0A067FU33_CITSI1.2e-3248.58Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019760mg PE=4 SV=1[more]
BLAST of Cp4.1LG11g00990 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42040.18.3e-2546.39 WRC (InterPro:IPR014977)[more]
BLAST of Cp4.1LG11g00990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659084724|ref|XP_008443038.1|1.8e-4561.35PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo][more]
gi|659084722|ref|XP_008443037.1|1.8e-4561.35PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo][more]
gi|659084726|ref|XP_008443039.1|1.8e-4561.35PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo][more]
gi|449437904|ref|XP_004136730.1|4.4e-4458.69PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus][more]
gi|778684741|ref|XP_011652086.1|4.4e-4458.69PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0032502developmental process
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR014977WRC_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032502 developmental process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g00990.1Cp4.1LG11g00990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014977WRC domainPFAMPF08879WRCcoord: 57..97
score: 1.9E-15coord: 230..270
score: 1.9
IPR014977WRC domainPROFILEPS51667WRCcoord: 55..99
score: 21.619coord: 228..272
score: 21
NoneNo IPR availablePANTHERPTHR31602:SF19SUBFAMILY NOT NAMEDcoord: 33..120
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g00990CmoCh06G001000Cucurbita moschata (Rifu)cmocpeB764
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g00990Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG11g00990Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG11g00990Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG11g00990Cucumber (Gy14) v1cgycpeB0919
Cp4.1LG11g00990Cucumber (Gy14) v1cgycpeB1039
Cp4.1LG11g00990Cucurbita maxima (Rimu)cmacpeB030
Cp4.1LG11g00990Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g00990Cucurbita maxima (Rimu)cmacpeB460
Cp4.1LG11g00990Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g00990Cucurbita moschata (Rifu)cmocpeB006
Cp4.1LG11g00990Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g00990Cucurbita moschata (Rifu)cmocpeB420
Cp4.1LG11g00990Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g00990Wild cucumber (PI 183967)cpecpiB092
Cp4.1LG11g00990Wild cucumber (PI 183967)cpecpiB112
Cp4.1LG11g00990Cucumber (Chinese Long) v2cpecuB096
Cp4.1LG11g00990Cucumber (Chinese Long) v2cpecuB116
Cp4.1LG11g00990Bottle gourd (USVL1VR-Ls)cpelsiB085
Cp4.1LG11g00990Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g00990Watermelon (Charleston Gray)cpewcgB115
Cp4.1LG11g00990Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g00990Watermelon (97103) v1cpewmB101
Cp4.1LG11g00990Watermelon (97103) v1cpewmB110
Cp4.1LG11g00990Melon (DHL92) v3.5.1cpemeB091
Cp4.1LG11g00990Melon (DHL92) v3.5.1cpemeB107
Cp4.1LG11g00990Cucumber (Gy14) v2cgybcpeB161
Cp4.1LG11g00990Cucumber (Gy14) v2cgybcpeB478
Cp4.1LG11g00990Melon (DHL92) v3.6.1cpemedB103
Cp4.1LG11g00990Melon (DHL92) v3.6.1cpemedB115
Cp4.1LG11g00990Melon (DHL92) v3.6.1cpemedB132
Cp4.1LG11g00990Silver-seed gourdcarcpeB0263
Cp4.1LG11g00990Silver-seed gourdcarcpeB0446
Cp4.1LG11g00990Silver-seed gourdcarcpeB0975
Cp4.1LG11g00990Silver-seed gourdcarcpeB1078
Cp4.1LG11g00990Cucumber (Chinese Long) v3cpecucB0106
Cp4.1LG11g00990Cucumber (Chinese Long) v3cpecucB0127
Cp4.1LG11g00990Cucumber (Chinese Long) v3cpecucB0141
Cp4.1LG11g00990Wax gourdcpewgoB0141
Cp4.1LG11g00990Wax gourdcpewgoB0157