Cp4.1LG10g12030 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g12030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionzinc finger (C3HC4-type RING finger) family protein
LocationCp4.1LG10 : 8118696 .. 8119346 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAACCCCAACACTCTGTCTCTCCAATATTGCATCCACACCCACCCCCTCAACACCACCGGCGTAGCCACCGACGCCCAACCCATGCAATACGCCGAGCTCCGATTAGCCTATTCCAACCAATTCGTCTCTCGATCCTCCAACCAACTCCTCCAACAAACCCCCGAAACCCCAATCTCCGATACTCTCTTACCTCTGTTTCTCCGAGACCTTCAACACCCGCCGTTCCTTTCCCACTTCTTACTCCTTCAATTTCTCTCTACCTTCAACATCTCCACCGCCACCTCCGACGCCATTTTCGATGACATCGCCACATTCGCCCTGGAATTGGCCGCCGGCGACCACGATCGGAACTTCCACATTATCGTCTATCTCGATTTAGTCCAGACGATCTGGGTGGACCTGGACCTGGAAATCCCTCGGAAACAAGAACCGGCGGCGGCGTGGGTGATGGAGAGGGTGATGAGGGAGGAATTTGATGGGTTTCGGGCGGAGGAGGCGGGAGATTGCAGCGTTTGTTGCGATGAGCTCCGTGGTGAAACGGAGGTGAGGCGACTCCCCTGCGGTCACGTCTTCCATAAATCCTGTATCCTCAACTGGCTTCAACTCACTAATTCCTGCCCTTTGTGCAGAGCAAAATTAGAATAA

mRNA sequence

ATGGCTAACCCCAACACTCTGTCTCTCCAATATTGCATCCACACCCACCCCCTCAACACCACCGGCGTAGCCACCGACGCCCAACCCATGCAATACGCCGAGCTCCGATTAGCCTATTCCAACCAATTCGTCTCTCGATCCTCCAACCAACTCCTCCAACAAACCCCCGAAACCCCAATCTCCGATACTCTCTTACCTCTGTTTCTCCGAGACCTTCAACACCCGCCGTTCCTTTCCCACTTCTTACTCCTTCAATTTCTCTCTACCTTCAACATCTCCACCGCCACCTCCGACGCCATTTTCGATGACATCGCCACATTCGCCCTGGAATTGGCCGCCGGCGACCACGATCGGAACTTCCACATTATCGTCTATCTCGATTTAGTCCAGACGATCTGGGTGGACCTGGACCTGGAAATCCCTCGGAAACAAGAACCGGCGGCGGCGTGGGTGATGGAGAGGGTGATGAGGGAGGAATTTGATGGGTTTCGGGCGGAGGAGGCGGGAGATTGCAGCGTTTGTTGCGATGAGCTCCGTGGTGAAACGGAGGTGAGGCGACTCCCCTGCGGTCACGTCTTCCATAAATCCTGTATCCTCAACTGGCTTCAACTCACTAATTCCTGCCCTTTGTGCAGAGCAAAATTAGAATAA

Coding sequence (CDS)

ATGGCTAACCCCAACACTCTGTCTCTCCAATATTGCATCCACACCCACCCCCTCAACACCACCGGCGTAGCCACCGACGCCCAACCCATGCAATACGCCGAGCTCCGATTAGCCTATTCCAACCAATTCGTCTCTCGATCCTCCAACCAACTCCTCCAACAAACCCCCGAAACCCCAATCTCCGATACTCTCTTACCTCTGTTTCTCCGAGACCTTCAACACCCGCCGTTCCTTTCCCACTTCTTACTCCTTCAATTTCTCTCTACCTTCAACATCTCCACCGCCACCTCCGACGCCATTTTCGATGACATCGCCACATTCGCCCTGGAATTGGCCGCCGGCGACCACGATCGGAACTTCCACATTATCGTCTATCTCGATTTAGTCCAGACGATCTGGGTGGACCTGGACCTGGAAATCCCTCGGAAACAAGAACCGGCGGCGGCGTGGGTGATGGAGAGGGTGATGAGGGAGGAATTTGATGGGTTTCGGGCGGAGGAGGCGGGAGATTGCAGCGTTTGTTGCGATGAGCTCCGTGGTGAAACGGAGGTGAGGCGACTCCCCTGCGGTCACGTCTTCCATAAATCCTGTATCCTCAACTGGCTTCAACTCACTAATTCCTGCCCTTTGTGCAGAGCAAAATTAGAATAA

Protein sequence

MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPISDTLLPLFLRDLQHPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFALELAAGDHDRNFHIIVYLDLVQTIWVDLDLEIPRKQEPAAAWVMERVMREEFDGFRAEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE
Homology
[Close]
BLAST of Cp4.1LG10g12030 vs. Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 111 LAAGDHDRNFHIIVYLDLVQTIWVDLDLEIPRKQEPAAAWVMERVMREEFDGFRAEEAGD 170
           L A D  RN   +  L ++  I  D+++E+P   + A   ++E  + E     +++E GD
Sbjct: 16  LGANDLARNLKRLQVLAIMNGI--DMEIEVPEASKRA---ILELPVHEIV---KSDEGGD 75

Query: 171 --CSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE 217
             CSVC +      + R LPC H FH+ CIL WL+ TNSCPLCR +LE
Sbjct: 76  LECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELE 115

[Close]
BLAST of Cp4.1LG10g12030 vs. Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 126 LDLVQTIWVDLDLEIPRKQEPAAAWVMERVMREEFDGFRAEEAGDCSVCCDELRGETEVR 185
           +DL    + + D  +P    PAA  V+E + +      +A+ A  C VC  E      VR
Sbjct: 37  IDLGALDFTEWDQRLP---PPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVR 96

Query: 186 RLPCGHVFHKSCILNWLQLTNSCPLCRAKL 216
           +LPC H+FH SCIL WL  TNSCPLCR +L
Sbjct: 97  QLPCEHLFHSSCILPWLGKTNSCPLCRHEL 123

[Close]
BLAST of Cp4.1LG10g12030 vs. Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 1 

Query: 134 VDLDLEIPRKQEPAAAWVMERVMREEFDGFRAEEAGDCSVCCDELRGETEVRRLPCGHVF 193
           VD D  +P    PAA  V+E + R    G +AE    C VC  E   E     +PC H+F
Sbjct: 44  VDWDHHLP---PPAAKTVVENLPRTVIRGSQAELK--CPVCLLEFEEEETAIEMPCHHLF 103

Query: 194 HKSCILNWLQLTNSCPLCRAKL 216
           H SCIL WL  TNSCPLCR +L
Sbjct: 104 HSSCILPWLSKTNSCPLCRYEL 120

[Close]
BLAST of Cp4.1LG10g12030 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.8e-11
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 146 PAAAWVMERVMREEFDGFRAEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLT 205
           PA+   +E + R E          +C+VC +    ETE R +PC H+FH  CI+ WL + 
Sbjct: 174 PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 233

Query: 206 NSCPLCRAKL 216
           NSCP+CR +L
Sbjct: 234 NSCPVCRFEL 243

[Close]
BLAST of Cp4.1LG10g12030 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.8e-11
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 167 EAGDCSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKL 216
           E   C+VC DE    ++V+++PC HVFH+ C+L WL+L NSCP+CR +L
Sbjct: 212 EMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of Cp4.1LG10g12030 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 111/224 (49.55%), Postives = 150/224 (66.96%), Query Frame = 1 

Query: 1   MANPNTLSLQYCIHTHPLNTTG-VATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETP 60
           M++P T S +  I     N  G  AT+ QP+Q+ ELRL + +Q V   S+Q+LQQT    
Sbjct: 1   MSSPTTFSFRCSIRC---NANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPIL 60

Query: 61  ISDTLLPLFLRDLQHPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFALELAAGDHDRN 120
           ISDTL+   LR+L+ PPF+SH  L +FLS++NIS A  DAIF  I++FA +L AG+ + N
Sbjct: 61  ISDTLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSN 120

Query: 121 FHIIVYLDLVQTIWVDLD--LEIPRKQEPAAAWVMERVMREEFDGFRAEEAGD-CSVCCD 180
           FHII  LD V T WVDLD   +    ++ A    +ER+M+E++DG   EE  D CSVC +
Sbjct: 121 FHIIAALDFVYTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYE 180

Query: 181 ELRGET----EVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE 217
           +L G+T    EV R+PCGH+FHKSCIL WL+++NSCPLCR +LE
Sbjct: 181 DLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of Cp4.1LG10g12030 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 111/232 (47.84%), Postives = 153/232 (65.95%), Query Frame = 1 

Query: 1   MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPI 60
           M+ P T S Q  I  +    + +ATD QP+Q+ +LRL +  Q V   S Q+LQQT  T I
Sbjct: 1   MSLPITFSFQCSIRRN--GKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLI 60

Query: 61  SDTLLPLFLRDLQHPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFA---LELAAGDHD 120
           SDTL+P  L +L+ PPF+S+F L +FLS+++IS A  DAIF +I++FA   L  A  + +
Sbjct: 61  SDTLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNIN 120

Query: 121 RNFHIIVYLDLVQTIWVDLD--LEIPRKQEPAAAWVMERVMREEFDGFRAEE-AGD--CS 180
            NFHII  +D+V T WVDLD   + P  ++ A+  V+ERVM+E++DG   EE  GD  CS
Sbjct: 121 VNFHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCS 180

Query: 181 VCCDELRG--------ETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE 217
           VC ++L G        E EV R+PCGH++HKSCIL WL+++NSCPLCR +LE
Sbjct: 181 VCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELE 230

[Close]
BLAST of Cp4.1LG10g12030 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-32
Identity = 95/226 (42.04%), Postives = 129/226 (57.08%), Query Frame = 1 

Query: 1   MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPI 60
           M++   LSL  C+ + P             Q  E+RL   ++ VS  SNQ +QQT  T I
Sbjct: 1   MSSTTNLSLDCCVRSIPTTAD--------KQLVEIRLRRFSKLVSPFSNQNIQQTFPTSI 60

Query: 61  SDTLLPLFLRDLQ-HPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFALELAAGDHDRN 120
           S+ L    L +L+   P L H  LLQFLS      A S AIF +I++FAL+LAAG+ + N
Sbjct: 61  SNALFHFPLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLN 120

Query: 121 FHIIVYLDLVQTIWVDLDLEIPRKQEPAA----AWVMERVMREEFDGFRAEEA--GDCSV 180
           FH+I  +DL+ TI ++L+L  P+   P      A VMER+M E++D     E   G C V
Sbjct: 121 FHLIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCV 180

Query: 181 CCDELRGETE-----VRRLPCGHVFHKSCILNWLQLTNSCPLCRAK 215
           C ++L  E E       R+PCGHV+HKSCIL WL + NSCPLCR++
Sbjct: 181 CYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]
BLAST of Cp4.1LG10g12030 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 75/206 (36.41%), Postives = 120/206 (58.25%), Query Frame = 1 

Query: 35  LRLAYSNQFVSRS------SNQLLQQTPETPISDTLLPLFLRDLQHPPFLSH--FLLLQF 94
           +RL + ++ +S+S       + +L+QTP T I + L  L   +LQ+P       +++ +F
Sbjct: 25  VRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFSL--SNLQYPLQQQELEYMVNEF 84

Query: 95  LSTFNISTATSDAIFDDIATFALELAAGDHDRNFHIIVYLDLVQTIWVDLDLEI------ 154
           L +FN+ ++    +  +I +FA +     ++  F I   +D ++  W +   E+      
Sbjct: 85  LRSFNLRSSVCRIVSHNILSFAQQFDI--NNECFKIETNVDYIKEYWTEAAPELYPISTV 144

Query: 155 ------PRKQEPAAAWVMERVMREEFDGFRAEEA---GDCSVCCDELRGET-EVRRLPCG 214
                 PR    +A   +ERV +++FDGFR EE    GDCSVCC+E++ +  EVRR+PCG
Sbjct: 145 GEEGLPPRGASESA---IERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCG 204

Query: 215 HVFHKSCILNWLQLTNSCPLCRAKLE 217
           HV+HKSCIL WL+++NSCPLCRA LE
Sbjct: 205 HVYHKSCILKWLEISNSCPLCRAALE 223

[Close]
BLAST of Cp4.1LG10g12030 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-22
Identity = 74/202 (36.63%), Postives = 104/202 (51.49%), Query Frame = 1 

Query: 34  ELRLAYSNQFVSRSS-----NQLLQQTPETPISDTLLPLFLRDLQHPPFLSHFLLLQFLS 93
           ++ +++  Q +S S      +++L QTP  P  + L  L LR LQ P F     + Q LS
Sbjct: 25  QVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLFY----ITQILS 84

Query: 94  TFNISTATSDAIFDDIATFALELAAGDHDRNFHIIVYLDLVQTIW--------------V 153
           + NI  A S  +   IA+  L++   + + NFHI+  +D ++ IW              V
Sbjct: 85  SLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEETV 144

Query: 154 DLDLEIPRKQEPAAAWVMERVMREEFDGFRAEEAGDCSVCCDELRGET-EVRRLPCGHVF 213
            LD   P  +        ER+  EE    + EE GDCS+C DEL  E  EV R+PCGHV+
Sbjct: 145 VLDEAPPAVKRGVGVARGERLRSEE----KMEELGDCSICLDELSCEKREVMRIPCGHVY 204

Query: 214 HKSCILNWLQLTNSCPLCRAKL 216
           H+SCI  WL+  NSCPLCR  L
Sbjct: 205 HESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cp4.1LG10g12030 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-12
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 167 EAGDCSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKL 216
           E   C+VC DE    ++V+++PC HVFH+ C+L WL+L NSCP+CR +L
Sbjct: 212 EMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of Cp4.1LG10g12030 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-12
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 146 PAAAWVMERVMREEFDGFRAEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLT 205
           PA+   +E + R E          +C+VC +    ETE R +PC H+FH  CI+ WL + 
Sbjct: 174 PASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 233

Query: 206 NSCPLCRAKL 216
           NSCP+CR +L
Sbjct: 234 NSCPVCRFEL 243

[Close]
BLAST of Cp4.1LG10g12030 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-11
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1 

Query: 146 PAAAWVMERVMREEFDGFRAEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLT 205
           PA+   +E + R E      +   +C+VC +      E R +PC H+FH  CI+ WL + 
Sbjct: 190 PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 249

Query: 206 NSCPLCRAKL 216
           NSCP+CR +L
Sbjct: 250 NSCPVCRFEL 259

[Close]
BLAST of Cp4.1LG10g12030 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-11
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 

Query: 171 CSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKL 216
           C+VC DE+  E +VRRLPC H +H  CI+ WL + N+CP+CR +L
Sbjct: 335 CAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYEL 379

[Close]
BLAST of Cp4.1LG10g12030 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-10
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 164 RAEEAGDCSVCCDELRGETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKL 216
           + EE   CSVC D+    TE + +PC H FH  C+L WL+L +SCP+CR +L
Sbjct: 216 KIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQL 267

[Close]
BLAST of Cp4.1LG10g12030 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 1.6e-48
Identity = 111/224 (49.55%), Postives = 150/224 (66.96%), Query Frame = 1 

Query: 1   MANPNTLSLQYCIHTHPLNTTG-VATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETP 60
           M++P T S +  I     N  G  AT+ QP+Q+ ELRL + +Q V   S+Q+LQQT    
Sbjct: 1   MSSPTTFSFRCSIRC---NANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPIL 60

Query: 61  ISDTLLPLFLRDLQHPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFALELAAGDHDRN 120
           ISDTL+   LR+L+ PPF+SH  L +FLS++NIS A  DAIF  I++FA +L AG+ + N
Sbjct: 61  ISDTLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSN 120

Query: 121 FHIIVYLDLVQTIWVDLD--LEIPRKQEPAAAWVMERVMREEFDGFRAEEAGD-CSVCCD 180
           FHII  LD V T WVDLD   +    ++ A    +ER+M+E++DG   EE  D CSVC +
Sbjct: 121 FHIIAALDFVYTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYE 180

Query: 181 ELRGET----EVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE 217
           +L G+T    EV R+PCGH+FHKSCIL WL+++NSCPLCR +LE
Sbjct: 181 DLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of Cp4.1LG10g12030 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 2.5e-46
Identity = 111/232 (47.84%), Postives = 153/232 (65.95%), Query Frame = 1 

Query: 1   MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPI 60
           M+ P T S Q  I  +    + +ATD QP+Q+ +LRL +  Q V   S Q+LQQT  T I
Sbjct: 1   MSLPITFSFQCSIRRN--GKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLI 60

Query: 61  SDTLLPLFLRDLQHPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFA---LELAAGDHD 120
           SDTL+P  L +L+ PPF+S+F L +FLS+++IS A  DAIF +I++FA   L  A  + +
Sbjct: 61  SDTLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNIN 120

Query: 121 RNFHIIVYLDLVQTIWVDLD--LEIPRKQEPAAAWVMERVMREEFDGFRAEE-AGD--CS 180
            NFHII  +D+V T WVDLD   + P  ++ A+  V+ERVM+E++DG   EE  GD  CS
Sbjct: 121 VNFHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCS 180

Query: 181 VCCDELRG--------ETEVRRLPCGHVFHKSCILNWLQLTNSCPLCRAKLE 217
           VC ++L G        E EV R+PCGH++HKSCIL WL+++NSCPLCR +LE
Sbjct: 181 VCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELE 230

[Close]
BLAST of Cp4.1LG10g12030 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 5.4e-41
Identity = 112/226 (49.56%), Postives = 145/226 (64.16%), Query Frame = 1 

Query: 1   MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPI 60
           M++  TLSL+ CIH+       VAT A   Q  E+RL   ++ VS SSNQ++QQT  TPI
Sbjct: 1   MSSTTTLSLECCIHS------SVATTADE-QLVEIRLRRYSKLVSPSSNQIIQQTFPTPI 60

Query: 61  SDTLL--PLFLRDLQHPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFALELAAGDHDR 120
           SD L   PL   +L++PPF  H LLLQFLS      A S AIF +I++FAL+LAAG+ + 
Sbjct: 61  SDALFHFPLPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNL 120

Query: 121 NFHIIVYLDLVQTIWVDLDLEIPRK----QEPAAAWVMERVMREEFD-GFRAEEAGD-CS 180
           NFH+I  +DL+ TI VDLDL+ P+     +  A A V+ER+M E++D G   EE GD C 
Sbjct: 121 NFHLIATVDLLYTISVDLDLDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCC 180

Query: 181 VCCDELR------GETEVRRLPCGHVFHKSCILNWLQLTNSCPLCR 213
           VC ++L        E EV R+PCGHV+HK CIL WL + NSCPLCR
Sbjct: 181 VCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCR 214

[Close]
BLAST of Cp4.1LG10g12030 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 95/226 (42.04%), Postives = 129/226 (57.08%), Query Frame = 1 

Query: 1   MANPNTLSLQYCIHTHPLNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPETPI 60
           M++   LSL  C+ + P             Q  E+RL   ++ VS  SNQ +QQT  T I
Sbjct: 1   MSSTTNLSLDCCVRSIPTTAD--------KQLVEIRLRRFSKLVSPFSNQNIQQTFPTSI 60

Query: 61  SDTLLPLFLRDLQ-HPPFLSHFLLLQFLSTFNISTATSDAIFDDIATFALELAAGDHDRN 120
           S+ L    L +L+   P L H  LLQFLS      A S AIF +I++FAL+LAAG+ + N
Sbjct: 61  SNALFHFPLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLN 120

Query: 121 FHIIVYLDLVQTIWVDLDLEIPRKQEPAA----AWVMERVMREEFDGFRAEEA--GDCSV 180
           FH+I  +DL+ TI ++L+L  P+   P      A VMER+M E++D     E   G C V
Sbjct: 121 FHLIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCV 180

Query: 181 CCDELRGETE-----VRRLPCGHVFHKSCILNWLQLTNSCPLCRAK 215
           C ++L  E E       R+PCGHV+HKSCIL WL + NSCPLCR++
Sbjct: 181 CYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]
BLAST of Cp4.1LG10g12030 vs. NCBI nr
Match: gi|449442467|ref|XP_004139003.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-24
Identity = 75/206 (36.41%), Postives = 120/206 (58.25%), Query Frame = 1 

Query: 35  LRLAYSNQFVSRS------SNQLLQQTPETPISDTLLPLFLRDLQHPPFLSH--FLLLQF 94
           +RL + ++ +S+S       + +L+QTP T I + L  L   +LQ+P       +++ +F
Sbjct: 25  VRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFSL--SNLQYPLQQQELEYMVNEF 84

Query: 95  LSTFNISTATSDAIFDDIATFALELAAGDHDRNFHIIVYLDLVQTIWVDLDLEI------ 154
           L +FN+ ++    +  +I +FA +     ++  F I   +D ++  W +   E+      
Sbjct: 85  LRSFNLRSSVCRIVSHNILSFAQQFDI--NNECFKIETNVDYIKEYWTEAAPELYPISTV 144

Query: 155 ------PRKQEPAAAWVMERVMREEFDGFRAEEA---GDCSVCCDELRGET-EVRRLPCG 214
                 PR    +A   +ERV +++FDGFR EE    GDCSVCC+E++ +  EVRR+PCG
Sbjct: 145 GEEGLPPRGASESA---IERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCG 204

Query: 215 HVFHKSCILNWLQLTNSCPLCRAKLE 217
           HV+HKSCIL WL+++NSCPLCRA LE
Sbjct: 205 HVYHKSCILKWLEISNSCPLCRAALE 223

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g12030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN181_DROME6.8e-1238.89E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 ... [more]
RN181_XENTR2.6e-1142.22E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1[more]
RN181_HUMAN4.4e-1146.34E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1[more]
RDUF2_ARATH5.8e-1140.00E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RNG1L_ARATH5.8e-1151.02E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
BLAST of Cp4.1LG10g12030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB0_CUCSA1.1e-4849.55Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA1.7e-4647.84Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA1.9e-3242.04Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
A0A0A0LHS2_CUCSA1.9e-2436.41Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1[more]
A0A0A0K696_CUCSA1.0e-2236.63Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
BLAST of Cp4.1LG10g12030 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.13.3e-1251.02 RING/U-box superfamily protein[more]
AT5G59550.13.3e-1240.00 zinc finger (C3HC4-type RING finger) family protein[more]
AT3G46620.13.6e-1137.14 zinc finger (C3HC4-type RING finger) family protein[more]
AT3G02340.18.0e-1153.33 RING/U-box superfamily protein[more]
AT1G55530.11.0e-1048.08 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG10g12030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674460|ref|XP_011650219.1|1.6e-4849.55PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|2.5e-4647.84hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|5.4e-4149.56PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778689036|ref|XP_011652885.1|2.7e-3242.04PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
gi|449442467|ref|XP_004139003.1|2.7e-2436.41PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g12030.1Cp4.1LG10g12030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 170..212
score: 3.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 171..211
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 171..212
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 166..215
score: 4.0
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 127..216
score: 2.1
NoneNo IPR availablePANTHERPTHR22763:SF3E3 UBIQUITIN-PROTEIN LIGASE RNF115coord: 127..216
score: 2.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 170..215
score: 1.12

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g12030Cucurbita moschata (Rifu)cmocpeB605
Cp4.1LG10g12030Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g12030Cucurbita moschata (Rifu)cmocpeB803
Cp4.1LG10g12030Wild cucumber (PI 183967)cpecpiB066
Cp4.1LG10g12030Cucumber (Chinese Long) v2cpecuB071
Cp4.1LG10g12030Bottle gourd (USVL1VR-Ls)cpelsiB055
Cp4.1LG10g12030Watermelon (Charleston Gray)cpewcgB079
Cp4.1LG10g12030Watermelon (97103) v1cpewmB091
Cp4.1LG10g12030Melon (DHL92) v3.5.1cpemeB072
Cp4.1LG10g12030Cucumber (Gy14) v2cgybcpeB464
Cp4.1LG10g12030Melon (DHL92) v3.6.1cpemedB087
Cp4.1LG10g12030Melon (DHL92) v3.6.1cpemedB095
Cp4.1LG10g12030Silver-seed gourdcarcpeB0398
Cp4.1LG10g12030Silver-seed gourdcarcpeB1196
Cp4.1LG10g12030Cucumber (Chinese Long) v3cpecucB0076
Cp4.1LG10g12030Wax gourdcpewgoB0092
Cp4.1LG10g12030Cucurbita pepo (Zucchini)cpecpeB079
Cp4.1LG10g12030Cucurbita pepo (Zucchini)cpecpeB085
Cp4.1LG10g12030Cucumber (Gy14) v1cgycpeB0931
Cp4.1LG10g12030Cucurbita maxima (Rimu)cmacpeB656