Cp4.1LG10g12020 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g12020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG10 : 8306859 .. 8311332 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGAAGCTCGCAAGCTTTTCGACGAAACTCCAACTAAAAATTCTATCACTTGGTCATCCCTGGTATCTGGATATTGCAGAAATGGGTGTGAAGTTGAAGGCTTGAGGCTGTTCAGCCAAATGTGGAGTGAGGGACAGAAGCCAAGTCAATATACATTGGGCAGTGTTTTACGAGCATGTTCGACTTTGGGTTTACTCCATAGTGGCAAAATGATTCATGGCTATGTAACAAAAATACAATTAGAAGCAAATATCTTCGTTGCTACCGGTCTCGTCGACATGTATTCCAAGTGTAAGTGTCTCCTGGAGGCTGAATACCTCTTTGTATCATTGTCTGATAGGAAAAACTATGTTCTATCGACCGCTATGCTCACCGGTTATGCTCAAAATGGCGAGAGTTTGAAGGCAATGCAGTGTTTTAAGGAGATGAGAATACAGGGAATGGAGTCTAACCATTTCACATTTCCCAGCATACTGACAGCATGTACAGCAATTTCAGCTTATGCTTTTGGTCAGCAGGTACATGGATGCATTATTTTGAGTGGTTTTGGTGCTAATGTTTATGTTCAAAGTGCATTAGTTGATATGTATGCGAAATGTGGCGACTTGAATAGTGCGAGGATGCTACTAAATATCATGGAAATCGATGATGTTGTATGCTGGAACTCGATGATTGTCGGGTGTGTGACACACGGACATATGGAGGAAGCTCTAGTTTTGTTCCATAAGATGCATAATCGGGATATTGTAATCGACGATTTCACGTACCCGTCTGTTTTGAAATCTCTGGGTACTTGCAGGGACCTGAAAAATGGAGAATCTGTTCATTCTCTGATAATGAAAACTGGTTTTGATGCCTGCAAAACAGTGAGCAATGCGCTTGTTGATATGTATGCTAAACAGGGAAACTTAAATTGTGCATTAGAGGTTTTCAATAAGATATCTGATAAAGATGTCATTTCTTGGACCTCCTTGGTCACGGGATATGTTCATAATGGCTTCCATGAAAAGGCTCTCAAGTTATTCTGTGACATGAGAATTGCAGGTGTTGATCTAGACCAATTCGTAATTGCCTGTGTCTTTAGTGCTTGTGCTGAACTAACGATTATCGAGTTTGGTCGACAGGTTCACGGAAACTTCATAAAATCAAGCGTTGGTTCACTGTTATCTGCTGAGAACTCTCTGATAACAATGTATGCCAAATGTGGATGCTTAGAAGATGCAACTCGAGTCTTTGACTCGATGGAAACTCGAAATGTCATATCATGGACTGCTATAATAGTTGGTTATGCACAGAATGGGAGAGGGAAGGACTCGCTTCGTTTTTACGACCGGATGATAATCGATGGCGTAAAGCCTGACCCTGTTACTTTCATTGGTTTGTTGTTTGCTTGCAGCCATGCAGGTCTAGTGGAAACTGGTCGATCTTACTTCGAATCAATGGAAAAGGTTTATGGAATAAAGCCGGGTTCTGATCATTATGCTTGCATGATTGATCTACTGGGACGTGCTGGAAAGCTTAACGAGGCAGAGGAGTTATTGAATCGAATGGACGTTGAGCCCGATGCAACCGTATGGAAGTCGTTACTTTCGGCATGTCGGGTTCATGGGAACTTAGAACTTGGAGAAAGGGCGGGGAAAAACCTCATTAAGTTGGAGCCTTTGAATTCTCTGCCATATGTTCTATTGTCCAATATGTTCTCTGTTGCTGGTAGATGGGAAGATGCAACATATATACGTAATTCAATGAAAAGAATGGGTATTAACAAGGAGCCTGGATATAGTTGGATTGAAATGAAGAGCCAAGTGCATTCATTTATATCAGAAGATAGAAGTCACCCTATGGCTGCTGAAATATATTCTAAGATTGATGAAATGATGATCTTAATAAAGGAAGCTGGGTATGTTCCCGATATGAACTTCGCGTTACGTGACATGGACGAAGAGGCTAAGGAACGTAGTTTAACATATCATAGCGAAAAGTTGGCTGTTGCGTTTGGACTCCTTGCAGTCCCGAATGGAGCGCCGATTCGAATTTTCAAAAATCTTAGGGTATGTGGGGACTGTCACTCAGCCATGAAATATATATCTAGCGTTTTTAAGCGGCATGTTATTTTGAGAGACTTGAATTGTTTCCATCACTTCAAAGAGGGAAAATGTTCTTGTGGAGACTTCTGGTAAGGGAGGTGTTTCACCACTTTTTAAGGAGGATCGGAAACCAGCTAAGGCACCGTAGCATCCCCTAAAGGCATAACTGACAGGTTCTATTCTATCTGCCCATCTGAGTCATCCTGTGTCGTTGATCCACCTTGGAGAATGAAACTTAAATATATATCTAGCGTTTTTAAGCGGCATGTTCTTTTGAGAGGCTTGAATTGTTTCCATCACTTCAAAGAGGCAAAATGTTCTTGTGGAGACTTTTGGTAAGGGAGGTGTATCGGAACCAGCTAAGGGACCGTAGCGTCCCCTAAAAGCGTAACTGATAGGTTCTGTTCTATCTGCCCATCCGAGTCATCCCGTGTCGTTGTTGACCCACCTTAGAGAATGAAACTTAAATATATATCTAGCGTTTTTAAGCGGCCTGTTCTTTTGAGAGACTTGAATTGTTTCCATCACTTCAAAGAGGGAAAATGTTCTTGTGGAGACTTTTGGTAAGGGAGGTGTATCGGAAACAGCTAAGGGACCGTAGCGTCCCCTAAAGGCGTAACTGACAGGTTCTGTTCTATCTGCCCATCCGAGTCATCCCGTGTCGTTGTTGACCCACCTTAGAGAATGAAACTTAAATATATATCTAGCGTTTTTAAGCGGCATGTTCTTTTGAGAGACTTGAATTGTTTCCATCACTTCAAATAGGGAAAGTGTTCTTGTGGAGACTTCTGGTAAGGGAGGTGTATCGGAAGCCAGCTAAGACACTGTAGCGTCCCCTAAAGATGTAACTGACAGGTTCTGTTCTATTTGCCCATCCGAGTGATCCCGTGTCTTTGTTGACCTACCTTGGAGAATGAAACTACTATTTCTTGATGATACCTGAGTTTTCCTATTAGCACAACTCAAGCAAGCTAAGAATGGTGGTAGTCATTTCCTGATCCTGATAAGAAGTAACTCCTAAATCCTTCACTTTGAAGCTTAATCCTACCATCTCTTTGTCCAACAACTCCGTTCAGGCGAAACCGCGGTGGTCCGTTCAGACAGGATTCTTCACTAGGCTTGGCAATTCTTCACTAGGCTTGGCTGGCTGCTCCGGGAGAAGTCAAAAAGTGATGTCGTGAGTATCTTCTTAGGCTTCTCGAACGCTCGAGACAACCTTGCTATTATCGACGAGCTTCTTCTATACTCGAACCTTGTGGAAACTGATAAGAGTTCTCGACGAACTCAAAGAGGTCCATCTTCTATTCCTTTACTGCATTCTTCTTTGTTCATGGATTCTTAGATTATTTGAAGAACTTGTCAAAACTAATACATGTATTGGCAGTTCATTTGATTCTGGAGTCTTTTGAAAAAATCATTCATAAGCTGAATGAAAAAGTATAATTAATCATTGTGTTGAAAACTTTATAGGCATTGTTGATGTGTGATTTCGGGTTAAGGATCACTGTTAAGATCGTGATGAGCTTCCATGATGACATATTGGCAGGGAAGCGTAAGTCGGGTCGTGAAATAAAGGTAATGAGTTCACGAATTGTTTCACTGCTTTGCTTTGTTTTGGCATTCGGTTGAGCATTCTTTGTAAAGGTATGGAAACCTCTTTTTAGTAGACGCGTTTTAAAACTTTGAGGGAAAACCCAAAAGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTACATGTATGGGTTGAGAGACTCATTTTGTATTACGGAATATGATGGAGTGTAGCATTATGAACCTTAACTATATTTCGTCTTCATTTTTGTAATTTTGTAACGGAGATTTCTTTATTAGGTTTTGGCAAGCCTATTTCTGGCTTCCCCCATCTTGAAATTTCTTTGTTTCTTATGTTTCGAGAACAGGAGATGTGAGATCTCCACATCGGTTAGGGAGGAGAACCAAGGTGTAGAAACCTCCTTTTCCTAGCAGCCCATTTTAAAATCGTGAGTCAGACGACAATACGTAATTGGCCAAAGCGAACAATATCTGCTATCAGTGGACTTGGGCTGTTACAAATGGTATAAGAGCTAGACATCGGGCGATGTGCCCGCAAGGAGGTTGAACCTCGAAGTGGGGTGGATTGGGAGTCCCACATCGATTGGAATGAGTGCCAACTACAACGTTGGACCCTGAAGGCAGTGAATTGTGAGATCCCACGAAGCATTCTTTATGAGAGCGTGGAAACCTTTCCCTACTAGATGCGTTATGAAAATTTTGAATAGTTCTTCATTTGTCATCTGATTTGTGCTATTCGGAATTGTCTTTTTGAACTCTATAAATGGAAGGTTTGCTATCATCGAAATATATGGTTTGATATGAGTTTG

mRNA sequence

ATGGTCGAAGCTCGCAAGCTTTTCGACGAAACTCCAACTAAAAATTCTATCACTTGGTCATCCCTGGTATCTGGATATTGCAGAAATGGGTGTGAAGTTGAAGGCTTGAGGCTGTTCAGCCAAATGTGGAGTGAGGGACAGAAGCCAAGTCAATATACATTGGGCAGTGTTTTACGAGCATGTTCGACTTTGGGTTTACTCCATAGTGGCAAAATGATTCATGGCTATGTAACAAAAATACAATTAGAAGCAAATATCTTCGTTGCTACCGGTCTCGTCGACATGTATTCCAAGTGTAAGTGTCTCCTGGAGGCTGAATACCTCTTTGTATCATTGTCTGATAGGAAAAACTATGTTCTATCGACCGCTATGCTCACCGGTTATGCTCAAAATGGCGAGAGTTTGAAGGCAATGCAGTGTTTTAAGGAGATGAGAATACAGGGAATGGAGGACCTGAAAAATGGAGAATCTGTTCATTCTCTGATAATGAAAACTGGTTTTGATGCCTGCAAAACAGTGAGCAATGCGCTTGTTGATATGTATGCTAAACAGGGAAACTTAAATTGTGCATTAGAGGTTTTCAATAAGATATCTGATAAAGATGTCATTTCTTGGACCTCCTTGGTCACGGGATATGTTCATAATGGCTTCCATGAAAAGGCTCTCAAGTTATTCTGTGACATGAGAATTGCAGGTGTTGATCTAGACCAATTCGTAATTGCCTGTGTCTTTAGTGCTTGTGCTGAACTAACGATTATCGAGTTTGGTCGACAGGCATTGTTGATGTGTGATTTCGGGTTAAGGATCACTGTTAAGATCGTGATGAGCTTCCATGATGACATATTGGCAGGGAAGCGTAAGTCGGGTCGTGAAATAAAGGAGATGTGAGATCTCCACATCGGTTAGGGAGGAGAACCAAGGTGTAGAAACCTCCTTTTCCTAGCAGCCCATTTTAAAATCGTGAGTCAGACGACAATACGTAATTGGCCAAAGCGAACAATATCTGCTATCAGTGGACTTGGGCTGTTACAAATGGTATAAGAGCTAGACATCGGGCGATGTGCCCGCAAGGAGGTTGAACCTCGAAGTGGGGTGGATTGGGAGTCCCACATCGATTGGAATGAGTGCCAACTACAACGTTGGACCCTGAAGGCAGTGAATTGTGAGATCCCACGAAGCATTCTTTATGAGAGCGTGGAAACCTTTCCCTACTAGATGCGTTATGAAAATTTTGAATAGTTCTTCATTTGTCATCTGATTTGTGCTATTCGGAATTGTCTTTTTGAACTCTATAAATGGAAGGTTTGCTATCATCGAAATATATGGTTTGATATGAGTTTG

Coding sequence (CDS)

ATGGTCGAAGCTCGCAAGCTTTTCGACGAAACTCCAACTAAAAATTCTATCACTTGGTCATCCCTGGTATCTGGATATTGCAGAAATGGGTGTGAAGTTGAAGGCTTGAGGCTGTTCAGCCAAATGTGGAGTGAGGGACAGAAGCCAAGTCAATATACATTGGGCAGTGTTTTACGAGCATGTTCGACTTTGGGTTTACTCCATAGTGGCAAAATGATTCATGGCTATGTAACAAAAATACAATTAGAAGCAAATATCTTCGTTGCTACCGGTCTCGTCGACATGTATTCCAAGTGTAAGTGTCTCCTGGAGGCTGAATACCTCTTTGTATCATTGTCTGATAGGAAAAACTATGTTCTATCGACCGCTATGCTCACCGGTTATGCTCAAAATGGCGAGAGTTTGAAGGCAATGCAGTGTTTTAAGGAGATGAGAATACAGGGAATGGAGGACCTGAAAAATGGAGAATCTGTTCATTCTCTGATAATGAAAACTGGTTTTGATGCCTGCAAAACAGTGAGCAATGCGCTTGTTGATATGTATGCTAAACAGGGAAACTTAAATTGTGCATTAGAGGTTTTCAATAAGATATCTGATAAAGATGTCATTTCTTGGACCTCCTTGGTCACGGGATATGTTCATAATGGCTTCCATGAAAAGGCTCTCAAGTTATTCTGTGACATGAGAATTGCAGGTGTTGATCTAGACCAATTCGTAATTGCCTGTGTCTTTAGTGCTTGTGCTGAACTAACGATTATCGAGTTTGGTCGACAGGCATTGTTGATGTGTGATTTCGGGTTAAGGATCACTGTTAAGATCGTGATGAGCTTCCATGATGACATATTGGCAGGGAAGCGTAAGTCGGGTCGTGAAATAAAGGAGATGTGA

Protein sequence

MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLSTAMLTGYAQNGESLKAMQCFKEMRIQGMEDLKNGESVHSLIMKTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLFCDMRIAGVDLDQFVIACVFSACAELTIIEFGRQALLMCDFGLRITVKIVMSFHDDILAGKRKSGREIKEM

Homology

[Close]

BLAST of Cp4.1LG10g12020 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 8.9e-47
Identity = 99/271 (36.53%), Postives = 159/271 (58.67%), Query Frame = 1


Query: 3   EARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACS 62
           EA K+FD +  +NSITWS++V+GY +NG  +E ++LFS+M+S G KPS+YT+  VL ACS
Sbjct: 274 EACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACS 333

Query: 63  TLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLST 122
            +  L  GK +H ++ K+  E ++F  T LVDMY+K  CL +A   F  L +R +  L T
Sbjct: 334 DICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQER-DVALWT 393

Query: 123 AMLTGYAQNGESLKAMQCFKEMRIQG-----------------MEDLKNGESVHSLIMKT 182
           ++++GY QN ++ +A+  ++ M+  G                 +  L+ G+ VH   +K 
Sbjct: 394 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 453

Query: 183 GFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLF 242
           GF     + +AL  MY+K G+L     VF +  +KDV+SW ++++G  HNG  ++AL+LF
Sbjct: 454 GFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELF 513

Query: 243 CDMRIAGVDLDQFVIACVFSACAELTIIEFG 257
            +M   G++ D      + SAC+    +E G
Sbjct: 514 EEMLAEGMEPDDVTFVNIISACSHKGFVERG 543

[Close]

BLAST of Cp4.1LG10g12020 vs. Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.6e-42
Identity = 99/275 (36.00%), Postives = 156/275 (56.73%), Query Frame = 1


Query: 4   ARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACST 63
           AR +FD    ++ I+W+S+++G  +NG EVE + LF Q+   G KP QYT+ SVL+A S+
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428

Query: 64  LGL-LHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNY--VL 123
           L   L   K +H +  KI   ++ FV+T L+D YS+ +C+ EAE LF    +R N+  V 
Sbjct: 429 LPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF----ERHNFDLVA 488

Query: 124 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 183
             AM+ GY Q+ +  K ++ F  M  QG                    +  G+ VH+  +
Sbjct: 489 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 548

Query: 184 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 243
           K+G+D    VS+ ++DMY K G+++ A   F+ I   D ++WT++++G + NG  E+A  
Sbjct: 549 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFH 608

Query: 244 LFCDMRIAGVDLDQFVIACVFSACAELTIIEFGRQ 259
           +F  MR+ GV  D+F IA +  A + LT +E GRQ
Sbjct: 609 VFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ 639

[Close]

BLAST of Cp4.1LG10g12020 vs. Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-39
Identity = 87/273 (31.87%), Postives = 152/273 (55.68%), Query Frame = 1


Query: 14  KNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACSTLGLLHSGKMI 73
           K+S++W++++ G  +NG   E +  F +M  +G K  QY  GSVL AC  LG ++ GK I
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292

Query: 74  HGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLSTAMLTGYAQNGE 133
           H  + +   + +I+V + L+DMY KCKCL  A+ +F  +  +KN V  TAM+ GY Q G 
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVGYGQTGR 352

Query: 134 SLKAMQCFKEMRIQGME-----------------DLKNGESVHSLIMKTGFDACKTVSNA 193
           + +A++ F +M+  G++                  L+ G   H   + +G     TVSN+
Sbjct: 353 AEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNS 412

Query: 194 LVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLFCDMRIAGVDLD 253
           LV +Y K G+++ +  +FN+++ +D +SWT++V+ Y   G   + ++LF  M   G+  D
Sbjct: 413 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 472

Query: 254 QFVIACVFSACAELTIIEFGRQ--ALLMCDFGL 268
              +  V SAC+   ++E G++   L+  ++G+
Sbjct: 473 GVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI 504

[Close]

BLAST of Cp4.1LG10g12020 vs. Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-39
Identity = 93/273 (34.07%), Postives = 142/273 (52.01%), Query Frame = 1


Query: 3   EARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACS 62
           +AR LF E  + + + W+ ++SG+ + GCE   +  F  M     K ++ TLGSVL A  
Sbjct: 279 DARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIG 338

Query: 63  TLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLST 122
            +  L  G ++H    K+ L +NI+V + LV MYSKC+ +  A  +F +L + KN V   
Sbjct: 339 IVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEAL-EEKNDVFWN 398

Query: 123 AMLTGYAQNGESLKAMQCFKEMRIQG-----------------MEDLKNGESVHSLIMKT 182
           AM+ GYA NGES K M+ F +M+  G                   DL+ G   HS+I+K 
Sbjct: 399 AMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 458

Query: 183 GFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLF 242
                  V NALVDMYAK G L  A ++F ++ D+D ++W +++  YV +    +A  LF
Sbjct: 459 KLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLF 518

Query: 243 CDMRIAGVDLDQFVIACVFSACAELTIIEFGRQ 259
             M + G+  D   +A    AC  +  +  G+Q
Sbjct: 519 KRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ 550

[Close]

BLAST of Cp4.1LG10g12020 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.8e-39
Identity = 92/267 (34.46%), Postives = 142/267 (53.18%), Query Frame = 1


Query: 3   EARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACS 62
           EARK+FD  P ++ ++W+++V+GY +NG     L +   M  E  KPS  T+ SVL A S
Sbjct: 188 EARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVS 247

Query: 63  TLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLST 122
            L L+  GK IHGY  +   ++ + ++T LVDMY+KC  L  A  LF  + +R N V   
Sbjct: 248 ALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLER-NVVSWN 307

Query: 123 AMLTGYAQNGESLKAMQCFKEMRIQGME-----------------DLKNGESVHSLIMKT 182
           +M+  Y QN    +AM  F++M  +G++                 DL+ G  +H L ++ 
Sbjct: 308 SMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVEL 367

Query: 183 GFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLF 242
           G D   +V N+L+ MY K   ++ A  +F K+  + ++SW +++ G+  NG    AL  F
Sbjct: 368 GLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYF 427

Query: 243 CDMRIAGVDLDQFVIACVFSACAELTI 253
             MR   V  D F    V +A AEL+I
Sbjct: 428 SQMRSRTVKPDTFTYVSVITAIAELSI 453

[Close]

BLAST of Cp4.1LG10g12020 vs. TrEMBL
Match: A0A0A0L1C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G554180 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 5.8e-85
Identity = 169/273 (61.90%), Postives = 193/273 (70.70%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           +VEARKLF+ETP KNSITWSSLVSGYC+NGCEVEGLR FSQMWS+GQKPSQYTLGSVLRA
Sbjct: 84  LVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRA 143

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTL LLH+GKMIH Y  KIQLEANIFVATGLVDMYSKCKCLLEAEYLF SL DRKNYV 
Sbjct: 144 CSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQ 203

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 180
            TAMLTGYAQNGESLKA+QCFKEMR QGME                     G  VH  I+
Sbjct: 204 WTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCII 263

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
            +GF     V +ALVDMYAK G+L  A  + + +   DV+ W S++ G V +G+ E+AL 
Sbjct: 264 WSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALV 323

Query: 241 LFCDMRIAGVDLDQFVIACVFSACAELTIIEFG 257
           LF  M    + +D F    V  + A    ++ G
Sbjct: 324 LFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIG 356

[Close]

BLAST of Cp4.1LG10g12020 vs. TrEMBL
Match: M5X7G8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001951mg PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 9.9e-69
Identity = 139/265 (52.45%), Postives = 175/265 (66.04%), Query Frame = 1


Query: 3   EARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACS 62
           EA++LFD TP+K  ITWSSL+SGYCRN CE E   LF QM  EG +PSQYTLGSVLR CS
Sbjct: 13  EAKQLFDATPSKTPITWSSLISGYCRNECESEAFVLFWQMQLEGHRPSQYTLGSVLRLCS 72

Query: 63  TLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLST 122
           TL LL SG+++HGYV K Q + N FV TGLVDMY+KCK + EAEYLF +L DRKN+VL T
Sbjct: 73  TLVLLQSGELVHGYVIKTQFDTNAFVVTGLVDMYAKCKRISEAEYLFETLPDRKNHVLWT 132

Query: 123 AMLTGYAQNGESLKAMQCFKEMRIQGMED---------------LKN--GESVHSLIMKT 182
            MLTGY+QNG+  KAM+CF++MR +G+E                L N  G  VH  I+++
Sbjct: 133 VMLTGYSQNGDGFKAMKCFRDMRAEGVESNQFTFPSILTASALILANSFGAQVHGCIVQS 192

Query: 183 GFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLF 242
           GF A   V +ALVDMY K G+ N A +    +   DV+SW S++ G V  GF E+AL LF
Sbjct: 193 GFGANVFVQSALVDMYVKCGDHNSAKKALKSMEVDDVVSWNSMIVGCVRQGFTEEALSLF 252

Query: 243 CDMRIAGVDLDQFVIACVFSACAEL 251
            +MR   + +D F    V ++ A L
Sbjct: 253 KEMRSRELKIDHFTYPSVLNSLAAL 277

[Close]

BLAST of Cp4.1LG10g12020 vs. TrEMBL
Match: G7L1H0_MEDTR (Pentatricopeptide (PPR) repeat protein OS=Medicago truncatula GN=MTR_7g076020 PE=4 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 2.3e-65
Identity = 132/265 (49.81%), Postives = 175/265 (66.04%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           +VEAR+LFD    K+SITWSS++SGYC+ GC+VE   LF  M  EG K SQ+TLGSVLR 
Sbjct: 83  LVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRV 142

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLS-DRKNYV 120
           CS+LGL+ +G+MIHG+V K   E N+FV TGLVDMY+KCKC+ EAE+LF  L  DRKN+V
Sbjct: 143 CSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHV 202

Query: 121 LSTAMLTGYAQNGESLKAMQCFKEMRIQGMEDLKN-----------------GESVHSLI 180
           L TAM+TGYAQNG+  KA++ F+ M  QG+E  +                  GE VH  I
Sbjct: 203 LWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFI 262

Query: 181 MKTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKAL 240
           +K+GF +   V +ALVDMYAK G+L  A  +   + D DV+SW SL+ G+V +G  E+AL
Sbjct: 263 VKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEAL 322

Query: 241 KLFCDMRIAGVDLDQFVIACVFSAC 248
           +LF +M    + +D +    V + C
Sbjct: 323 RLFKNMHGRNMKIDDYTFPSVLNCC 347

[Close]

BLAST of Cp4.1LG10g12020 vs. TrEMBL
Match: A0A061DTD9_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_005409 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.3e-64
Identity = 124/267 (46.44%), Postives = 172/267 (64.42%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           + EA +LF E P K+SITW+SL+SGYCR G E+E   LF  M  EGQ+P+QYT+GS+LR 
Sbjct: 83  LTEAIELFKEIPMKSSITWNSLISGYCRGGMEIEAFDLFWGMQFEGQRPNQYTMGSILRL 142

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTLGLL  GK +HGYV K Q E+N +V TGLVDMY+KC C+LEAE LF  + D++N+V+
Sbjct: 143 CSTLGLLQRGKQVHGYVIKTQFESNDYVVTGLVDMYAKCNCILEAECLFKMMPDKRNHVM 202

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQGMEDLKN-----------------GESVHSLIM 180
            TA++ GY+QNGE+ KA++CF++M ++G+E  +                  G  VH  I 
Sbjct: 203 WTAIVAGYSQNGEAFKAIECFRDMLVEGVESNQFTFPSVLIACAAVKAGNVGAQVHGCIF 262

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
           ++GF+    V +ALVDMYAK  +L+ A+ V   +   DV+SW S++ G V  GF E+AL 
Sbjct: 263 RSGFETNVYVQSALVDMYAKCRDLDNAMRVLENMEVDDVVSWNSMIVGCVRQGFEEEALS 322

Query: 241 LFCDMRIAGVDLDQFVIACVFSACAEL 251
           LF  M    + +D F    V +  A +
Sbjct: 323 LFRKMHARDMKMDSFTYPSVLNCFASM 349

[Close]

BLAST of Cp4.1LG10g12020 vs. TrEMBL
Match: A0A0D2QPM6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G096200 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 124/265 (46.79%), Postives = 173/265 (65.28%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           + EA +LF ETP K+SITW+ L+SGYC +G E E   LFS+M  EGQ+P+QYT+GS+LR 
Sbjct: 83  LTEAIQLFKETPIKSSITWNLLISGYCLHGMETEAFHLFSRMQFEGQRPNQYTMGSILRL 142

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTLGLL  GK +HGYV K Q E+N +V TGLVDMY+KC C+LEAEYLF  + +++N+V+
Sbjct: 143 CSTLGLLQRGKQVHGYVIKTQFESNDYVVTGLVDMYAKCNCILEAEYLFKMMPNKRNHVM 202

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQG-----------------MEDLKNGESVHSLIM 180
            TAM+ GY+QNGE+ KA++C+++M ++G                 ++    G  VHS I+
Sbjct: 203 WTAMVAGYSQNGEAFKAIECYRDMVVEGVASNQFTFPSVLTACAAVQARNFGTQVHSFIV 262

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
           ++GF+A   V +AL+DMYAK  +L+ AL V   +   DV+SW S++ G V  G  E+AL 
Sbjct: 263 RSGFEANVFVQSALIDMYAKCRDLDSALIVLENMEVDDVVSWNSMLVGCVRQGCEEEALS 322

Query: 241 LFCDMRIAGVDLDQFVIACVFSACA 249
           LF  M    + L  F    V +  A
Sbjct: 323 LFRKMHARDMKLGNFTYPSVLNCFA 347

[Close]

BLAST of Cp4.1LG10g12020 vs. TAIR10
Match: AT3G61170.1 (AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 104/263 (39.54%), Postives = 157/263 (59.70%), Query Frame = 1


Query: 3   EARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACS 62
           +A KLF   P KN+I+W++L+SGYC++G +VE   LF +M S+G KP++YTLGSVLR C+
Sbjct: 77  DAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCT 136

Query: 63  TLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLST 122
           +L LL  G+ IHG+  K   + ++ V  GL+ MY++CK + EAEYLF ++   KN V  T
Sbjct: 137 SLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWT 196

Query: 123 AMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIMKT 182
           +MLTGY+QNG + KA++CF+++R +G +                   + G  VH  I+K+
Sbjct: 197 SMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKS 256

Query: 183 GFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLF 242
           GF     V +AL+DMYAK   +  A  +   +   DV+SW S++ G V  G   +AL +F
Sbjct: 257 GFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMF 316

Query: 243 CDMRIAGVDLDQFVIACVFSACA 249
             M    + +D F I  + +  A
Sbjct: 317 GRMHERDMKIDDFTIPSILNCFA 339

[Close]

BLAST of Cp4.1LG10g12020 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 188.7 bits (478), Expect = 5.0e-48
Identity = 99/271 (36.53%), Postives = 159/271 (58.67%), Query Frame = 1


Query: 3   EARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACS 62
           EA K+FD +  +NSITWS++V+GY +NG  +E ++LFS+M+S G KPS+YT+  VL ACS
Sbjct: 274 EACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACS 333

Query: 63  TLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLST 122
            +  L  GK +H ++ K+  E ++F  T LVDMY+K  CL +A   F  L +R +  L T
Sbjct: 334 DICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQER-DVALWT 393

Query: 123 AMLTGYAQNGESLKAMQCFKEMRIQG-----------------MEDLKNGESVHSLIMKT 182
           ++++GY QN ++ +A+  ++ M+  G                 +  L+ G+ VH   +K 
Sbjct: 394 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 453

Query: 183 GFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLF 242
           GF     + +AL  MY+K G+L     VF +  +KDV+SW ++++G  HNG  ++AL+LF
Sbjct: 454 GFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELF 513

Query: 243 CDMRIAGVDLDQFVIACVFSACAELTIIEFG 257
            +M   G++ D      + SAC+    +E G
Sbjct: 514 EEMLAEGMEPDDVTFVNIISACSHKGFVERG 543

[Close]

BLAST of Cp4.1LG10g12020 vs. TAIR10
Match: AT4G33170.1 (AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-43
Identity = 99/275 (36.00%), Postives = 156/275 (56.73%), Query Frame = 1


Query: 4   ARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACST 63
           AR +FD    ++ I+W+S+++G  +NG EVE + LF Q+   G KP QYT+ SVL+A S+
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428

Query: 64  LGL-LHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNY--VL 123
           L   L   K +H +  KI   ++ FV+T L+D YS+ +C+ EAE LF    +R N+  V 
Sbjct: 429 LPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF----ERHNFDLVA 488

Query: 124 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 183
             AM+ GY Q+ +  K ++ F  M  QG                    +  G+ VH+  +
Sbjct: 489 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 548

Query: 184 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 243
           K+G+D    VS+ ++DMY K G+++ A   F+ I   D ++WT++++G + NG  E+A  
Sbjct: 549 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFH 608

Query: 244 LFCDMRIAGVDLDQFVIACVFSACAELTIIEFGRQ 259
           +F  MR+ GV  D+F IA +  A + LT +E GRQ
Sbjct: 609 VFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ 639

[Close]

BLAST of Cp4.1LG10g12020 vs. TAIR10
Match: AT3G09040.1 (AT3G09040.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-40
Identity = 93/273 (34.07%), Postives = 142/273 (52.01%), Query Frame = 1


Query: 3   EARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACS 62
           +AR LF E  + + + W+ ++SG+ + GCE   +  F  M     K ++ TLGSVL A  
Sbjct: 279 DARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIG 338

Query: 63  TLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLST 122
            +  L  G ++H    K+ L +NI+V + LV MYSKC+ +  A  +F +L + KN V   
Sbjct: 339 IVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEAL-EEKNDVFWN 398

Query: 123 AMLTGYAQNGESLKAMQCFKEMRIQG-----------------MEDLKNGESVHSLIMKT 182
           AM+ GYA NGES K M+ F +M+  G                   DL+ G   HS+I+K 
Sbjct: 399 AMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 458

Query: 183 GFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLF 242
                  V NALVDMYAK G L  A ++F ++ D+D ++W +++  YV +    +A  LF
Sbjct: 459 KLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLF 518

Query: 243 CDMRIAGVDLDQFVIACVFSACAELTIIEFGRQ 259
             M + G+  D   +A    AC  +  +  G+Q
Sbjct: 519 KRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ 550

[Close]

BLAST of Cp4.1LG10g12020 vs. TAIR10
Match: AT1G68930.1 (AT1G68930.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-40
Identity = 87/273 (31.87%), Postives = 152/273 (55.68%), Query Frame = 1


Query: 14  KNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRACSTLGLLHSGKMI 73
           K+S++W++++ G  +NG   E +  F +M  +G K  QY  GSVL AC  LG ++ GK I
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292

Query: 74  HGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVLSTAMLTGYAQNGE 133
           H  + +   + +I+V + L+DMY KCKCL  A+ +F  +  +KN V  TAM+ GY Q G 
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVGYGQTGR 352

Query: 134 SLKAMQCFKEMRIQGME-----------------DLKNGESVHSLIMKTGFDACKTVSNA 193
           + +A++ F +M+  G++                  L+ G   H   + +G     TVSN+
Sbjct: 353 AEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNS 412

Query: 194 LVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALKLFCDMRIAGVDLD 253
           LV +Y K G+++ +  +FN+++ +D +SWT++V+ Y   G   + ++LF  M   G+  D
Sbjct: 413 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 472

Query: 254 QFVIACVFSACAELTIIEFGRQ--ALLMCDFGL 268
              +  V SAC+   ++E G++   L+  ++G+
Sbjct: 473 GVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI 504

[Close]

BLAST of Cp4.1LG10g12020 vs. NCBI nr
Match: gi|659083162|ref|XP_008442216.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.7e-85
Identity = 169/274 (61.68%), Postives = 193/274 (70.44%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           +VEAR+LF ETP KNSITWS+LVSGYC+NGCEVEGLRLFSQMWS+GQKPSQYTLGSVLRA
Sbjct: 22  LVEARRLFSETPIKNSITWSTLVSGYCKNGCEVEGLRLFSQMWSDGQKPSQYTLGSVLRA 81

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTL LLHSGKMIH Y  KIQLE NIFVATGLVDMYSKCKCLLEAEYLF SL DRKNYV 
Sbjct: 82  CSTLSLLHSGKMIHCYAIKIQLEENIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQ 141

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 180
            TAMLTGYAQNGESLKA+QCFKEMRIQGME                     G  VH  I+
Sbjct: 142 WTAMLTGYAQNGESLKAIQCFKEMRIQGMESNHFTFPSILTACTSISAYAFGRQVHGCII 201

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
            +GF     V +ALVDMYAK G+L  A  + N +   DV+ W S++ G V +G+ E+AL 
Sbjct: 202 WSGFGPNVYVQSALVDMYAKCGDLASARVILNTMEIDDVVCWNSMIVGCVTHGYMEEALV 261

Query: 241 LFCDMRIAGVDLDQFVIACVFSACAELTIIEFGR 258
           LF  M    + +D F       + A    ++ G+
Sbjct: 262 LFHKMHNRDIRIDDFTYPSALKSLASSKNLKIGQ 295

[Close]

BLAST of Cp4.1LG10g12020 vs. NCBI nr
Match: gi|659083154|ref|XP_008442211.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.7e-85
Identity = 169/274 (61.68%), Postives = 193/274 (70.44%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           +VEAR+LF ETP KNSITWS+LVSGYC+NGCEVEGLRLFSQMWS+GQKPSQYTLGSVLRA
Sbjct: 81  LVEARRLFSETPIKNSITWSTLVSGYCKNGCEVEGLRLFSQMWSDGQKPSQYTLGSVLRA 140

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTL LLHSGKMIH Y  KIQLE NIFVATGLVDMYSKCKCLLEAEYLF SL DRKNYV 
Sbjct: 141 CSTLSLLHSGKMIHCYAIKIQLEENIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQ 200

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 180
            TAMLTGYAQNGESLKA+QCFKEMRIQGME                     G  VH  I+
Sbjct: 201 WTAMLTGYAQNGESLKAIQCFKEMRIQGMESNHFTFPSILTACTSISAYAFGRQVHGCII 260

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
            +GF     V +ALVDMYAK G+L  A  + N +   DV+ W S++ G V +G+ E+AL 
Sbjct: 261 WSGFGPNVYVQSALVDMYAKCGDLASARVILNTMEIDDVVCWNSMIVGCVTHGYMEEALV 320

Query: 241 LFCDMRIAGVDLDQFVIACVFSACAELTIIEFGR 258
           LF  M    + +D F       + A    ++ G+
Sbjct: 321 LFHKMHNRDIRIDDFTYPSALKSLASSKNLKIGQ 354

[Close]

BLAST of Cp4.1LG10g12020 vs. NCBI nr
Match: gi|778695095|ref|XP_011653924.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 8.3e-85
Identity = 169/273 (61.90%), Postives = 193/273 (70.70%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           +VEARKLF+ETP KNSITWSSLVSGYC+NGCEVEGLR FSQMWS+GQKPSQYTLGSVLRA
Sbjct: 84  LVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRA 143

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTL LLH+GKMIH Y  KIQLEANIFVATGLVDMYSKCKCLLEAEYLF SL DRKNYV 
Sbjct: 144 CSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQ 203

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 180
            TAMLTGYAQNGESLKA+QCFKEMR QGME                     G  VH  I+
Sbjct: 204 WTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCII 263

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
            +GF     V +ALVDMYAK G+L  A  + + +   DV+ W S++ G V +G+ E+AL 
Sbjct: 264 WSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALV 323

Query: 241 LFCDMRIAGVDLDQFVIACVFSACAELTIIEFG 257
           LF  M    + +D F    V  + A    ++ G
Sbjct: 324 LFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIG 356

[Close]

BLAST of Cp4.1LG10g12020 vs. NCBI nr
Match: gi|700199701|gb|KGN54859.1| (hypothetical protein Csa_4G554180 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 8.3e-85
Identity = 169/273 (61.90%), Postives = 193/273 (70.70%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           +VEARKLF+ETP KNSITWSSLVSGYC+NGCEVEGLR FSQMWS+GQKPSQYTLGSVLRA
Sbjct: 84  LVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRA 143

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTL LLH+GKMIH Y  KIQLEANIFVATGLVDMYSKCKCLLEAEYLF SL DRKNYV 
Sbjct: 144 CSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQ 203

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 180
            TAMLTGYAQNGESLKA+QCFKEMR QGME                     G  VH  I+
Sbjct: 204 WTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCII 263

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
            +GF     V +ALVDMYAK G+L  A  + + +   DV+ W S++ G V +G+ E+AL 
Sbjct: 264 WSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALV 323

Query: 241 LFCDMRIAGVDLDQFVIACVFSACAELTIIEFG 257
           LF  M    + +D F    V  + A    ++ G
Sbjct: 324 LFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIG 356

[Close]

BLAST of Cp4.1LG10g12020 vs. NCBI nr
Match: gi|694425837|ref|XP_009340625.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 273.5 bits (698), Expect = 4.4e-70
Identity = 138/267 (51.69%), Postives = 177/267 (66.29%), Query Frame = 1


Query: 1   MVEARKLFDETPTKNSITWSSLVSGYCRNGCEVEGLRLFSQMWSEGQKPSQYTLGSVLRA 60
           + EA++LFD TP+KNSITWSSL+SGYCRN CE E   LF +M  EG KPSQYTLGSVLR 
Sbjct: 95  LAEAKQLFDATPSKNSITWSSLISGYCRNECESEAFELFWRMQFEGHKPSQYTLGSVLRL 154

Query: 61  CSTLGLLHSGKMIHGYVTKIQLEANIFVATGLVDMYSKCKCLLEAEYLFVSLSDRKNYVL 120
           CSTLGLL  G ++HGY+TK Q + NIFV TGLVDMY+KCK + EAEYLFV+L DRKN+VL
Sbjct: 155 CSTLGLLQRGALVHGYMTKTQFDNNIFVVTGLVDMYAKCKRISEAEYLFVTLPDRKNHVL 214

Query: 121 STAMLTGYAQNGESLKAMQCFKEMRIQGMED-----------------LKNGESVHSLIM 180
            T MLTGY+QNG+  KAM+ F++MR +G+E                     G  VH  ++
Sbjct: 215 WTVMLTGYSQNGDGFKAMKFFRDMRAEGVESNHFTFPSVLTASASVLAHSFGAQVHGCVV 274

Query: 181 KTGFDACKTVSNALVDMYAKQGNLNCALEVFNKISDKDVISWTSLVTGYVHNGFHEKALK 240
           ++G  A   V ++LVDMY K G+LN A +    +   DV+SW S++ G V  GF E+AL 
Sbjct: 275 QSGLGANVFVQSSLVDMYVKCGDLNSAKKALRSMEVDDVVSWNSMIVGCVRQGFAEEALS 334

Query: 241 LFCDMRIAGVDLDQFVIACVFSACAEL 251
           LF DMR   + +D F    V ++ A +
Sbjct: 335 LFKDMRSREMKIDHFTYPSVLNSFAAM 361

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g12020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP181_ARATH	8.9e-47	36.53	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN...	[more]
PP347_ARATH	6.6e-42	36.00	Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN...	[more]
PP108_ARATH	5.2e-39	31.87	Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th...	[more]
PP220_ARATH	5.2e-39	34.07	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop...	[more]
PPR32_ARATH	6.8e-39	34.46	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG10g12020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1C4_CUCSA	5.8e-85	61.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G554180 PE=4 SV=1	[more]
M5X7G8_PRUPE	9.9e-69	52.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001951mg PE=4 SV=1	[more]
G7L1H0_MEDTR	2.3e-65	49.81	Pentatricopeptide (PPR) repeat protein OS=Medicago truncatula GN=MTR_7g076020 PE...	[more]
A0A061DTD9_THECC	3.3e-64	46.44	Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0054...	[more]
A0A0D2QPM6_GOSRA	1.2e-63	46.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G096200 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g12020 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61170.1	1.5e-52	39.54	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33680.1	5.0e-48	36.53	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G33170.1	3.7e-43	36.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09040.1	3.0e-40	34.07	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G68930.1	3.0e-40	31.87	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of Cp4.1LG10g12020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083162\|ref\|XP_008442216.1\|	1.7e-85	61.68	PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitoc...	[more]
gi\|659083154\|ref\|XP_008442211.1\|	1.7e-85	61.68	PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitoc...	[more]
gi\|778695095\|ref\|XP_011653924.1\|	8.3e-85	61.90	PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial ...	[more]
gi\|700199701\|gb\|KGN54859.1\|	8.3e-85	61.90	hypothetical protein Csa_4G554180 [Cucumis sativus]	[more]
gi\|694425837\|ref\|XP_009340625.1\|	4.4e-70	51.69	PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g12020.1	Cp4.1LG10g12020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 203..233 score: 1.4E-7coord: 122..148 score: 3.5E-5coord: 175..201 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 14..61 score: 7.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 122..149 score: 1.0E-4coord: 17..50 score: 1.2E-7coord: 175..202 score: 0.0016coord: 203..236 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 170..200 score: 6.939coord: 85..115 score: 5.492coord: 117..151 score: 8.703coord: 201..235 score: 10.786coord: 15..49 score: 12
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 3..258 score: 3.8E
None	No IPR available	PANTHER	PTHR24015:SF894	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN	coord: 3..258 score: 3.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g12020	Lsi01G019470	Bottle gourd (USVL1VR-Ls)	cpelsiB055
Cp4.1LG10g12020	MELO3C009001.2	Melon (DHL92) v3.6.1	cpemedB095
Cp4.1LG10g12020	CsaV3_4G031220	Cucumber (Chinese Long) v3	cpecucB0076
Cp4.1LG10g12020	Bhi03G002219	Wax gourd	cpewgoB0104
Cp4.1LG10g12020	CsGy4G019480	Cucumber (Gy14) v2	cgybcpeB464
Cp4.1LG10g12020	Carg25730	Silver-seed gourd	carcpeB1196

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g12020	Cp4.1LG19g00490	Cucurbita pepo (Zucchini)	cpecpeB079

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g12020	Cucurbita pepo (Zucchini)	cpecpeB085
Cp4.1LG10g12020	Cucumber (Gy14) v1	cgycpeB0931
Cp4.1LG10g12020	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g12020	Cucurbita maxima (Rimu)	cmacpeB863
Cp4.1LG10g12020	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g12020	Cucurbita moschata (Rifu)	cmocpeB803
Cp4.1LG10g12020	Wild cucumber (PI 183967)	cpecpiB066
Cp4.1LG10g12020	Cucumber (Chinese Long) v2	cpecuB071
Cp4.1LG10g12020	Watermelon (Charleston Gray)	cpewcgB079
Cp4.1LG10g12020	Melon (DHL92) v3.5.1	cpemeB072
Cp4.1LG10g12020	Melon (DHL92) v3.6.1	cpemedB087
Cp4.1LG10g12020	Silver-seed gourd	carcpeB0398