Cp4.1LG10g10780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g10780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 6627186 .. 6627521 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCGTCTCCAAAGACTAACGACAACGACAACGACAATCCATTCCATTTCGATGAGAAACAAAGTCATCATGGAGATTCCGTGGTTTCTAACCAATGTCGAGAGGTGAAAACCGAGCAAGACGGGAACAGGGTAGCATCCATGAAGGAGATCGAGTCGATGGTATCGCTCGATAACTTGGGGGCGTCTTGTGAGAATGATAATAAGCAAAATAGAAGCGAGAATAATAATAACAACAACAATAACCCTCCATTGTCATTTCTTGAGAAATGGCTACTTGATGACACTTCTGTTCAAGTAGAGGAGATGATGCCATTGTCACCAATGTTCTAA

mRNA sequence

ATGAGATCGTCTCCAAAGACTAACGACAACGACAACGACAATCCATTCCATTTCGATGAGAAACAAAGTCATCATGGAGATTCCGTGGTTTCTAACCAATGTCGAGAGGTGAAAACCGAGCAAGACGGGAACAGGGTAGCATCCATGAAGGAGATCGAGTCGATGGTATCGCTCGATAACTTGGGGGCGTCTTGTGAGAATGATAATAAGCAAAATAGAAGCGAGAATAATAATAACAACAACAATAACCCTCCATTGTCATTTCTTGAGAAATGGCTACTTGATGACACTTCTGTTCAAGTAGAGGAGATGATGCCATTGTCACCAATGTTCTAA

Coding sequence (CDS)

ATGAGATCGTCTCCAAAGACTAACGACAACGACAACGACAATCCATTCCATTTCGATGAGAAACAAAGTCATCATGGAGATTCCGTGGTTTCTAACCAATGTCGAGAGGTGAAAACCGAGCAAGACGGGAACAGGGTAGCATCCATGAAGGAGATCGAGTCGATGGTATCGCTCGATAACTTGGGGGCGTCTTGTGAGAATGATAATAAGCAAAATAGAAGCGAGAATAATAATAACAACAACAATAACCCTCCATTGTCATTTCTTGAGAAATGGCTACTTGATGACACTTCTGTTCAAGTAGAGGAGATGATGCCATTGTCACCAATGTTCTAA

Protein sequence

MRSSPKTNDNDNDNPFHFDEKQSHHGDSVVSNQCREVKTEQDGNRVASMKEIESMVSLDNLGASCENDNKQNRSENNNNNNNNPPLSFLEKWLLDDTSVQVEEMMPLSPMF
Homology
[Close]
BLAST of Cp4.1LG10g10780 vs. TrEMBL
Match: A0A0A0KYR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416980 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 68/160 (42.50%), Postives = 79/160 (49.38%), Query Frame = 1 

Query: 1   MRSSPKTNDNDNDNPFHFDEKQSH-HGDS------------------------------V 60
           MRSSPK  D++ +   HF EKQ+H +GDS                              V
Sbjct: 116 MRSSPKKTDDNENILIHFHEKQNHDNGDSSMVSIQGLEPKTEEDGGDRLVLGKEIESSMV 175

Query: 61  VSNQ-----------CREVKTEQDGNRVASMKEIESMVSLDNLGASCENDN--KQNRS-- 112
           VS +           C E  +  D  ++  +K+        N    CENDN  KQNRS  
Sbjct: 176 VSPENLNNDDHNVGVCWEKSSNFDVGKMMKIKK--------NSFEDCENDNIIKQNRSEN 235

[Close]
BLAST of Cp4.1LG10g10780 vs. TrEMBL
Match: A0A061F7E0_THECC (Myb domain protein 60 OS=Theobroma cacao GN=TCM_025795 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-06
Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 1 

Query: 1   MRSSPKTNDNDNDNPFHFDEKQSHH--------GDSVVSNQCREV---------KTEQDG 60
           MRSSPKTN +++       EK SHH         DS+ S               K EQ+G
Sbjct: 223 MRSSPKTNSSNSTTLLK--EKWSHHQNNNSFDNNDSIGSTSAAAPTSLQGGYRRKAEQEG 282

Query: 61  NRVASMKEIESMVSLDNLG------ASCENDNKQNRSENNNN------------------ 112
             + S +E ES++S +N+       ++C++ +K    ++ N+                  
Sbjct: 283 GELISHEEFESILSFENMNNVAWDKSTCDSTSKGTCQDSGNDDDKVNNVTMTPETRKQKA 342

[Close]
BLAST of Cp4.1LG10g10780 vs. NCBI nr
Match: gi|659111521|ref|XP_008455771.1| (PREDICTED: myb-related protein 306 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-13
Identity = 69/159 (43.40%), Postives = 81/159 (50.94%), Query Frame = 1 

Query: 1   MRSSPKTNDNDNDNPFHFDEKQSH-HGDS------------------------------V 60
           MRSSPK ND++ +   HF EKQ+H +GDS                              V
Sbjct: 200 MRSSPKRNDDNENILIHFHEKQNHDNGDSSMVSIQGLEPKTEEDAGDRLALGKEIESSMV 259

Query: 61  VSNQ-----------CREVKTEQDGNRVASMKEIESMVSLDNLGASCENDN--KQNRS-- 112
           VS +           C E  +  D  ++  +K+        N   +CENDN  KQNRS  
Sbjct: 260 VSPENLNNDDHNVGGCWEKSSNFDVGKMMKIKK--------NSFENCENDNIIKQNRSEN 319

[Close]
BLAST of Cp4.1LG10g10780 vs. NCBI nr
Match: gi|778694605|ref|XP_011653837.1| (PREDICTED: myb-related protein 306 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 6.0e-12
Identity = 68/160 (42.50%), Postives = 79/160 (49.38%), Query Frame = 1 

Query: 1   MRSSPKTNDNDNDNPFHFDEKQSH-HGDS------------------------------V 60
           MRSSPK  D++ +   HF EKQ+H +GDS                              V
Sbjct: 202 MRSSPKKTDDNENILIHFHEKQNHDNGDSSMVSIQGLEPKTEEDGGDRLVLGKEIESSMV 261

Query: 61  VSNQ-----------CREVKTEQDGNRVASMKEIESMVSLDNLGASCENDN--KQNRS-- 112
           VS +           C E  +  D  ++  +K+        N    CENDN  KQNRS  
Sbjct: 262 VSPENLNNDDHNVGVCWEKSSNFDVGKMMKIKK--------NSFEDCENDNIIKQNRSEN 321

[Close]
BLAST of Cp4.1LG10g10780 vs. NCBI nr
Match: gi|700199495|gb|KGN54653.1| (hypothetical protein Csa_4G416980 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 6.0e-12
Identity = 68/160 (42.50%), Postives = 79/160 (49.38%), Query Frame = 1 

Query: 1   MRSSPKTNDNDNDNPFHFDEKQSH-HGDS------------------------------V 60
           MRSSPK  D++ +   HF EKQ+H +GDS                              V
Sbjct: 116 MRSSPKKTDDNENILIHFHEKQNHDNGDSSMVSIQGLEPKTEEDGGDRLVLGKEIESSMV 175

Query: 61  VSNQ-----------CREVKTEQDGNRVASMKEIESMVSLDNLGASCENDN--KQNRS-- 112
           VS +           C E  +  D  ++  +K+        N    CENDN  KQNRS  
Sbjct: 176 VSPENLNNDDHNVGVCWEKSSNFDVGKMMKIKK--------NSFEDCENDNIIKQNRSEN 235

[Close]
BLAST of Cp4.1LG10g10780 vs. NCBI nr
Match: gi|1009162986|ref|XP_015899725.1| (PREDICTED: myb-related protein 306 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 58/150 (38.67%), Postives = 78/150 (52.00%), Query Frame = 1 

Query: 1   MRSSPKTND-------NDNDNPFHFDEKQSHHGDSVVSNQCREVKTEQDGNRVASMKEIE 60
           MRSSPK  +       +D D+   F+     +  S+ S QC   K EQ+G  + S +E E
Sbjct: 183 MRSSPKMPNTKGAQVKHDKDDSVEFEHISVGNPSSMPSLQCCGPKAEQEGGDLVSNEEFE 242

Query: 61  SMVSLDNL--------GASCEND--NKQN----------------------RSENNNNNN 112
           S++S +NL         ++C++   NK N                      +S  NNNN 
Sbjct: 243 SILSFENLNNVSSWDRSSTCDSSTPNKGNSQSSVADHEEKIVHGVSEKNKQKSAENNNNI 302

[Close]
BLAST of Cp4.1LG10g10780 vs. NCBI nr
Match: gi|1009162988|ref|XP_015899726.1| (PREDICTED: myb-related protein 306 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 58/150 (38.67%), Postives = 78/150 (52.00%), Query Frame = 1 

Query: 1   MRSSPKTND-------NDNDNPFHFDEKQSHHGDSVVSNQCREVKTEQDGNRVASMKEIE 60
           MRSSPK  +       +D D+   F+     +  S+ S QC   K EQ+G  + S +E E
Sbjct: 157 MRSSPKMPNTKGAQVKHDKDDSVEFEHISVGNPSSMPSLQCCGPKAEQEGGDLVSNEEFE 216

Query: 61  SMVSLDNL--------GASCEND--NKQN----------------------RSENNNNNN 112
           S++S +NL         ++C++   NK N                      +S  NNNN 
Sbjct: 217 SILSFENLNNVSSWDRSSTCDSSTPNKGNSQSSVADHEEKIVHGVSEKNKQKSAENNNNI 276

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g10780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g10780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYR1_CUCSA4.2e-1242.50Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416980 PE=4 SV=1[more]
A0A061F7E0_THECC7.6e-0634.81Myb domain protein 60 OS=Theobroma cacao GN=TCM_025795 PE=4 SV=1[more]
BLAST of Cp4.1LG10g10780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g10780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111521|ref|XP_008455771.1|7.1e-1343.40PREDICTED: myb-related protein 306 [Cucumis melo][more]
gi|778694605|ref|XP_011653837.1|6.0e-1242.50PREDICTED: myb-related protein 306 [Cucumis sativus][more]
gi|700199495|gb|KGN54653.1|6.0e-1242.50hypothetical protein Csa_4G416980 [Cucumis sativus][more]
gi|1009162986|ref|XP_015899725.1|1.2e-0938.67PREDICTED: myb-related protein 306 isoform X1 [Ziziphus jujuba][more]
gi|1009162988|ref|XP_015899726.1|1.2e-0938.67PREDICTED: myb-related protein 306 isoform X2 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g10780.1Cp4.1LG10g10780.1mRNA