Cp4.1LG10g08470 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g08470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 5035772 .. 5035996 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGACCGATGCGAGATCCGCTACGAATGGCAACGAATGTCTGACGCCGAGGAACTGCGCTTTTAGAATTCCGGCGGCATCCAAATGCCCGCCACCGCCGAAGAAGAAAGCGGTCACTGGTCGGAAGCAGCCTCCACCGACGAGCGGGTATTTCCACCCTCCCGATCTCGATGCTTTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGTTTAG

mRNA sequence

ATGGAGAAGACCGATGCGAGATCCGCTACGAATGGCAACGAATGTCTGACGCCGAGGAACTGCGCTTTTAGAATTCCGGCGGCATCCAAATGCCCGCCACCGCCGAAGAAGAAAGCGGTCACTGGTCGGAAGCAGCCTCCACCGACGAGCGGGTATTTCCACCCTCCCGATCTCGATGCTTTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGTTTAG

Coding sequence (CDS)

ATGGAGAAGACCGATGCGAGATCCGCTACGAATGGCAACGAATGTCTGACGCCGAGGAACTGCGCTTTTAGAATTCCGGCGGCATCCAAATGCCCGCCACCGCCGAAGAAGAAAGCGGTCACTGGTCGGAAGCAGCCTCCACCGACGAGCGGGTATTTCCACCCTCCCGATCTCGATGCTTTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGTTTAG

Protein sequence

MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRWEACV
Homology
[Close]
BLAST of Cp4.1LG10g08470 vs. TrEMBL
Match: A0A0A0KXI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296170 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.5e-23
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          MEKTD     NG+ECLTP++CA RIP   KCPPPPKKK+ TGRK  PPT GYF PPDLD 
Sbjct: 6  MEKTDK----NGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 65

Query: 61 LFSMPPSSRWEAC 74
          LFSMPPSSRWEAC
Sbjct: 66 LFSMPPSSRWEAC 74

[Close]
BLAST of Cp4.1LG10g08470 vs. TrEMBL
Match: B9SZZ7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452270 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-12
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 12 GNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRW 71
          G EC TPR+   RIP    CPPPP+KK+ TG K+ PP +GYF PPDLD L S+PP   W
Sbjct: 14 GEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDLLLSVPPRKAW 72

[Close]
BLAST of Cp4.1LG10g08470 vs. TrEMBL
Match: W9RWM9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009438 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 11 NGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRW 70
          +  +C TP+    RIP A  CPPPP+KK+V G K+PPP +GYF PPDLD+LF MP  SR 
Sbjct: 17 DSEDCTTPKRRECRIPEAFVCPPPPRKKSVIGAKRPPPKNGYFQPPDLDSLFLMP--SRR 76

Query: 71 EAC 74
          +AC
Sbjct: 77 QAC 77

[Close]
BLAST of Cp4.1LG10g08470 vs. TrEMBL
Match: R0HA77_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002381mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          ME  +  +    + C TPR+  +RIP AS CPPPP+KK++  RK+ PP +GYF PPDL+A
Sbjct: 3  MEVAERTTEMVEDGCTTPRSSMYRIPVASVCPPPPRKKSMVLRKRDPPRNGYFQPPDLEA 62

Query: 61 LFSMPPSSRWEACV 75
          LF   P  R EACV
Sbjct: 63 LFYAQP--RREACV 74

[Close]
BLAST of Cp4.1LG10g08470 vs. TrEMBL
Match: A0A151QMQ0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_048034 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-11
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 13 NECLTPRNCAFRIPAASKCPPPP-KKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRWE 72
          +EC TPR    +IPA   CPPPP +KK V G+++PPP  GYFHPPDLD+LFS+P  +R E
Sbjct: 5  DECRTPRLMQNQIPAVFICPPPPPRKKPVAGKRRPPPKEGYFHPPDLDSLFSVP--ARKE 64

Query: 73 ACV 75
           CV
Sbjct: 65 TCV 65

[Close]
BLAST of Cp4.1LG10g08470 vs. TAIR10
Match: AT5G02220.1 (AT5G02220.1 unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-13
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          ME  + ++      C TPR+  +RIP AS CPPPP+KK +  RK+ PP +GYF PPDL+ 
Sbjct: 1  MEVVERKTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLET 60

Query: 61 LFSMPPSSRWEAC 74
          LF   P  R EAC
Sbjct: 61 LFYAQP--RREAC 71

[Close]
BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: gi|700199105|gb|KGN54263.1| (hypothetical protein Csa_4G296170 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-23
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          MEKTD     NG+ECLTP++CA RIP   KCPPPPKKK+ TGRK  PPT GYF PPDLD 
Sbjct: 6  MEKTDK----NGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 65

Query: 61 LFSMPPSSRWEAC 74
          LFSMPPSSRWEAC
Sbjct: 66 LFSMPPSSRWEAC 74

[Close]
BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: gi|255581520|ref|XP_002531566.1| (PREDICTED: uncharacterized protein LOC8258387 [Ricinus communis])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 12 GNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRW 71
          G EC TPR+   RIP    CPPPP+KK+ TG K+ PP +GYF PPDLD L S+PP   W
Sbjct: 14 GEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDLLLSVPPRKAW 72

[Close]
BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: gi|703140747|ref|XP_010107304.1| (hypothetical protein L484_009438 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 11 NGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRW 70
          +  +C TP+    RIP A  CPPPP+KK+V G K+PPP +GYF PPDLD+LF MP  SR 
Sbjct: 17 DSEDCTTPKRRECRIPEAFVCPPPPRKKSVIGAKRPPPKNGYFQPPDLDSLFLMP--SRR 76

Query: 71 EAC 74
          +AC
Sbjct: 77 QAC 77

[Close]
BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: gi|1012317916|gb|KYP31565.1| (hypothetical protein KK1_048034 [Cajanus cajan])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 13 NECLTPRNCAFRIPAASKCPPPP-KKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRWE 72
          +EC TPR    +IPA   CPPPP +KK V G+++PPP  GYFHPPDLD+LFS+P  +R E
Sbjct: 5  DECRTPRLMQNQIPAVFICPPPPPRKKPVAGKRRPPPKEGYFHPPDLDSLFSVP--ARKE 64

Query: 73 ACV 75
           CV
Sbjct: 65 TCV 65

[Close]
BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: gi|565462006|ref|XP_006289002.1| (hypothetical protein CARUB_v10002381mg [Capsella rubella])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          ME  +  +    + C TPR+  +RIP AS CPPPP+KK++  RK+ PP +GYF PPDL+A
Sbjct: 3  MEVAERTTEMVEDGCTTPRSSMYRIPVASVCPPPPRKKSMVLRKRDPPRNGYFQPPDLEA 62

Query: 61 LFSMPPSSRWEACV 75
          LF   P  R EACV
Sbjct: 63 LFYAQP--RREACV 74

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g08470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXI9_CUCSA3.5e-2373.97Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296170 PE=4 SV=1[more]
B9SZZ7_RICCO8.1e-1257.63Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452270 PE=4 SV=1[more]
W9RWM9_9ROSA1.1e-1157.14Uncharacterized protein OS=Morus notabilis GN=L484_009438 PE=4 SV=1[more]
R0HA77_9BRAS3.1e-1151.35Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002381mg PE=4 SV=1[more]
A0A151QMQ0_CAJCA3.1e-1158.73Uncharacterized protein OS=Cajanus cajan GN=KK1_048034 PE=4 SV=1[more]
BLAST of Cp4.1LG10g08470 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02220.11.0e-1349.32 unknown protein[more]
BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199105|gb|KGN54263.1|5.0e-2373.97hypothetical protein Csa_4G296170 [Cucumis sativus][more]
gi|255581520|ref|XP_002531566.1|1.2e-1157.63PREDICTED: uncharacterized protein LOC8258387 [Ricinus communis][more]
gi|703140747|ref|XP_010107304.1|1.5e-1157.14hypothetical protein L484_009438 [Morus notabilis][more]
gi|1012317916|gb|KYP31565.1|4.4e-1158.73hypothetical protein KK1_048034 [Cajanus cajan][more]
gi|565462006|ref|XP_006289002.1|4.4e-1151.35hypothetical protein CARUB_v10002381mg [Capsella rubella][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g08470.1Cp4.1LG10g08470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g08470CmoCh03G004300Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g08470Csa4G296170Cucumber (Chinese Long) v2cpecuB070
Cp4.1LG10g08470MELO3C003142Melon (DHL92) v3.5.1cpemeB062
Cp4.1LG10g08470CSPI04G14780Wild cucumber (PI 183967)cpecpiB065
Cp4.1LG10g08470Lsi01G014370Bottle gourd (USVL1VR-Ls)cpelsiB048
Cp4.1LG10g08470MELO3C003142.2Melon (DHL92) v3.6.1cpemedB082
Cp4.1LG10g08470CsaV3_3G034820Cucumber (Chinese Long) v3cpecucB0073
Cp4.1LG10g08470CsaV3_4G025140Cucumber (Chinese Long) v3cpecucB0075
Cp4.1LG10g08470Bhi03G001570Wax gourdcpewgoB0085
Cp4.1LG10g08470Carg18328Silver-seed gourdcarcpeB0128
Cp4.1LG10g08470Carg12541Silver-seed gourdcarcpeB1383
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g08470Wax gourdcpewgoB0065
Cp4.1LG10g08470Cucurbita pepo (Zucchini)cpecpeB071
Cp4.1LG10g08470Cucurbita pepo (Zucchini)cpecpeB072
Cp4.1LG10g08470Cucurbita pepo (Zucchini)cpecpeB084
Cp4.1LG10g08470Cucurbita pepo (Zucchini)cpecpeB093
Cp4.1LG10g08470Cucumber (Gy14) v1cgycpeB0095
Cp4.1LG10g08470Cucumber (Gy14) v1cgycpeB0482
Cp4.1LG10g08470Cucurbita maxima (Rimu)cmacpeB256
Cp4.1LG10g08470Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g08470Cucurbita maxima (Rimu)cmacpeB809
Cp4.1LG10g08470Cucurbita maxima (Rimu)cmacpeB862
Cp4.1LG10g08470Cucurbita moschata (Rifu)cmocpeB220
Cp4.1LG10g08470Cucurbita moschata (Rifu)cmocpeB653
Cp4.1LG10g08470Cucurbita moschata (Rifu)cmocpeB763
Cp4.1LG10g08470Cucurbita moschata (Rifu)cmocpeB802
Cp4.1LG10g08470Wild cucumber (PI 183967)cpecpiB063
Cp4.1LG10g08470Cucumber (Chinese Long) v2cpecuB068
Cp4.1LG10g08470Cucumber (Chinese Long) v2cpecuB084
Cp4.1LG10g08470Bottle gourd (USVL1VR-Ls)cpelsiB061
Cp4.1LG10g08470Watermelon (Charleston Gray)cpewcgB056
Cp4.1LG10g08470Watermelon (Charleston Gray)cpewcgB078
Cp4.1LG10g08470Watermelon (97103) v1cpewmB062
Cp4.1LG10g08470Watermelon (97103) v1cpewmB086
Cp4.1LG10g08470Melon (DHL92) v3.5.1cpemeB053
Cp4.1LG10g08470Cucumber (Gy14) v2cgybcpeB294
Cp4.1LG10g08470Cucumber (Gy14) v2cgybcpeB463
Cp4.1LG10g08470Cucumber (Gy14) v2cgybcpeB591
Cp4.1LG10g08470Melon (DHL92) v3.6.1cpemedB056
Cp4.1LG10g08470Melon (DHL92) v3.6.1cpemedB070
Cp4.1LG10g08470Silver-seed gourdcarcpeB0220
Cp4.1LG10g08470Silver-seed gourdcarcpeB0825
Cp4.1LG10g08470Silver-seed gourdcarcpeB1288
Cp4.1LG10g08470Cucumber (Chinese Long) v3cpecucB0090