Cp4.1LG10g08000 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g08000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 5321652 .. 5324141 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTGATAAAGAGCGCCAATCTTATATAGTGAAACTTTGTCGTCGTGATTCTTTTACAGGCGCTTGTTCGCTCTGCTTCATCTTCATCCGTCCATGGCTTCTCTTCCTTTCAGACTGCTTCCTCGTTCTTTCTCTTTCTCCAAATCTGAAACCCTAGGAACATCTCTGCGTGCTTCTTCTACTGGTTCTCTTTCAATCTCTACAACTTCGTGTCCTTCTTCAATTCCTGCTGGTATGTATTTGTTAGCTTGATTCAAGTGTTTTCGTTTCTTCTGTTCACTTTCGATCGCTTAATTTCTGTTCTGTGTGTTGCTTTTTCGGTGTATTGTGGCAGAGGTGATAAGAAAACGGAGAAAGGAAAGCGGTTCAAGCACTCGTTCGTAACTGTATGTGTCTCATCTACTCTCTTCGTTTTCTTCGATTCTTTTTCTGACTGTGAGTTTCTCTTTTGTCTTCGATGTGTTCTCTTTCGTTTTTTGTTTTGATTTCTTTTCGGAGGGGAATGATCAGGCAAGGCCTCGGGACAAGACGAAAGGGACGCCGAGACGAAATCAAGATCGAGATTGATGAGTCTCTTTTCTCTAGATAATCTTGGAGCATTCTAATTCTGTTTATTTGAATGTGTTTTTAGATTCAGAAGGTACTTCCACTTCTTATATTCGCATTATTCTTATATAAAATTTTCAGCCACTCATTAGCTTCTTGAATCTGTTGTTCGTTTTCAGTCTACTCGAAGGATGGTCTCTCTCTCTCTCTCTCTCGCCTCCTCTTGCTTTTAACCATTTCCGAGGAAGACTCTGAGTTTTGCTGCTTCATAGATAATCTTTGCGTCATTATCAGGCGTTTGTTTCGAAGGGAATATAAGTAATCTTCCTCCTCCATCTTATCGAAAGCTTGAGTTGAGCTATTTGAGATGGTTTTACAAGTTTCTTTCCAATTGTCTTAGTTTGGTTTTACAAGCAAGCCTCAATTGCTTGTTCATCTGCTAAGATCTGAGCGGAGTTTGGGACGATTTATCCATTACTCTCTCTGTAATAGACTAACGGAGATTACCTAGTTTATTGCACATCATACCTTTTAAAAATATAAACAAAGAGTAGTTACAACCTCGGATAGACTGTTTCCTGTGACAAACAAACGGTGAAGTAATCTTTGCCGGCTTTTGCAAATGATATATTTCTTAATTCGATTTCAGCCGTCTATGTTGCTTTTTATATGTGTTTTGGAGGTTTCTAATGTCTCTCTATAGATCGAAAATGTCTTTCCTGATTCATCAGTATCAGCCAAAGCCTTTTAGATAGCTATGTCAGTATCAGAGATAACTGAGGATGAAGAAGAGGTATCTAAGTTTATTGATCCTGAAGTCCAAAAGGAAAGAATCCGACAAATACTCAAGTACCAGAAATCTGTGTATTCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCTTCTATCTCAACCTCGGCATCATCTTCCAGAAGCTGTAGTTTACTAGACTTGATGAAAGCAGGAAACACTTCTCTCAGGAGATTATTTGACATGCAGCATACTAGTTTGGCCACCTATTTTGATAAGTACAGTGGATCACCCACGATAAAGCCTATACCATTATGGGGCAGTGATTCTGATGTAGAAACCTGTGATGCTTGGGCATCCATCAAGATCGGACTCTCACATGATTCTAGATCTCGCGGAACTAATTGCACATCAAATGGTATTTTCATGGACAGAAACACAGGGCCTCGGAATAGCACGGTAAGGGTTAACAAACACAAGTTAACTAGGAAAAAGTCATTTCGGAAGCTACCTGGATTTGGTCTGCTATGGAGAAGCGGAAGATTTAGAGTCCGGATCAGGTGGAGACGACTTCGAATTATGATATGTGGTAAAATATTCTAATGTTGACTAGAATTGTTTACTGATCTTTGATGTTTACATTATAAGGAATTTCTGCTCTAGATGTCTTCAGTACAACACCCGTGTCGGCAAATCTCCTTGTTATATTGACTAATCTTGAGATCTGTCCATAGGCCCCAGCTCCGGCTAGTGAATTCGACGGTGATGACTGATCATTTCTGCCGATCAAGGTATTTCAATGGAAAGCTAGAATTGGGTCCATTTGACCCTATTTTGATATTACAGCTGCGTTTTGACCATAGCTGATCAAACCGATCCTAATGTATCTTGATTTAGTGGTTCTGAAATATTTTCTAGCGGTGTCATACTACCTGGTGTCTGGCTTTAATACCATTTGTAACAGTCCAATCCTCGTTGGCACACCACATGTGTCTGACTCTGGTATCATTTGTAACAGTCCAGTCCTCGCTGGCACACCACCTGTGTCTGGCTCTGATATCATTTGTAACAGTCCAATCTTTGTTGGCACACCGTTGGCACACCATCTGGTCCTCTCGGTGGGCTCTCACTAGCACACCACCCTGGCTCTGATATCATTTGTAACAGTCCAATCTTC

mRNA sequence

ATGTCGCGCTTGTTCGCTCTGCTTCATCTTCATCCGTCCATGGCTTCTCTTCCTTTCAGACTGCTTCCTCGTTCTTTCTCTTTCTCCAAATCTGAAACCCTAGGAACATCTCTGCGTGCTTCTTCTACTGGTTCTCTTTCAATCTCTACAACTTCGTGTCCTTCTTCAATTCCTGCTGAGGTGATAAGAAAACGGAGAAAGGAAAGCGGTTCAAGCACTCGTTCGGGAATGATCAGGCAAGGCCTCGGGACAAGACGAAAGGGACGCCGAGACGAAATCAAGATCGAGATTGATGAGTCTCTTTTCTCTAGATAATCTTGGAGCATTCTAATTCTGTTTATTTGAATGTGTTTTTAGATTCAGAAGTCTACTCGAAGGATGGTCTCTCTCTCTCTCTCTCTCGCCTCCTCTTGCTTTTAACCATTTCCGAGGAAGACTCTGAGTTTTGCTGCTTCATAGATAATCTTTGCGTCATTATCAGGCGTTTGTTTCGAAGGGAATATAAGTAATCTTCCTCCTCCATCTTATCGAAAGCTTGAGTTGAGCTATTTGAGATGGTTTTACAAGTTTCTTTCCAATTGTCTTAGTTTGGTTTTACAAGCAAGCCTCAATTGCTTGTTCATCTGCTAAGATCTGAGCGGAGTTTGGGACGATTTATCCATTACTCTCTCTGTAATAGACTAACGGAGATTACCTAGTTTATTGCACATCATACCTTTTAAAAATATAAACAAAGAGTAGTTACAACCTCGGATAGACTGTTTCCTGTGACAAACAAACGGTGAAGTAATCTTTGCCGGCTTTTGCAAATGATATATTTCTTAATTCGATTTCAGCCGTCTATGTTGCTTTTTATATGTGTTTTGGAGGTTTCTAATGTCTCTCTATAGATCGAAAATGTCTTTCCTGATTCATCAGTATCAGCCAAAGCCTTTTAGATAGCTATGTCAGTATCAGAGATAACTGAGGATGAAGAAGAGGTATCTAAGTTTATTGATCCTGAAGTCCAAAAGGAAAGAATCCGACAAATACTCAAGTACCAGAAATCTGTGTATTCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCTTCTATCTCAACCTCGGCATCATCTTCCAGAAGCTGTAGTTTACTAGACTTGATGAAAGCAGGAAACACTTCTCTCAGGAGATTATTTGACATGCAGCATACTAGTTTGGCCACCTATTTTGATAAGTACAGTGGATCACCCACGATAAAGCCTATACCATTATGGGGCAGTGATTCTGATGTAGAAACCTGTGATGCTTGGGCATCCATCAAGATCGGACTCTCACATGATTCTAGATCTCGCGGAACTAATTGCACATCAAATGGTATTTTCATGGACAGAAACACAGGGCCTCGGAATAGCACGGTAAGGGTTAACAAACACAAGTTAACTAGGAAAAAGTCATTTCGGAAGCTACCTGGATTTGGTCTGCTATGGAGAAGCGGAAGATTTAGAGTCCGGATCAGGTGGAGACGACTTCGAATTATGATATGTGGTAAAATATTCTAATGTTGACTAGAATTGTTTACTGATCTTTGATGTTTACATTATAAGGAATTTCTGCTCTAGATGTCTTCAGTACAACACCCGTGTCGGCAAATCTCCTTGTTATATTGACTAATCTTGAGATCTGTCCATAGGCCCCAGCTCCGGCTAGTGAATTCGACGGTGATGACTGATCATTTCTGCCGATCAAGGTATTTCAATGGAAAGCTAGAATTGGGTCCATTTGACCCTATTTTGATATTACAGCTGCGTTTTGACCATAGCTGATCAAACCGATCCTAATGTATCTTGATTTAGTGGTTCTGAAATATTTTCTAGCGGTGTCATACTACCTGGTGTCTGGCTTTAATACCATTTGTAACAGTCCAATCCTCGTTGGCACACCACATGTGTCTGACTCTGGTATCATTTGTAACAGTCCAGTCCTCGCTGGCACACCACCTGTGTCTGGCTCTGATATCATTTGTAACAGTCCAATCTTTGTTGGCACACCGTTGGCACACCATCTGGTCCTCTCGGTGGGCTCTCACTAGCACACCACCCTGGCTCTGATATCATTTGTAACAGTCCAATCTTC

Coding sequence (CDS)

ATGTCGCGCTTGTTCGCTCTGCTTCATCTTCATCCGTCCATGGCTTCTCTTCCTTTCAGACTGCTTCCTCGTTCTTTCTCTTTCTCCAAATCTGAAACCCTAGGAACATCTCTGCGTGCTTCTTCTACTGGTTCTCTTTCAATCTCTACAACTTCGTGTCCTTCTTCAATTCCTGCTGAGGTGATAAGAAAACGGAGAAAGGAAAGCGGTTCAAGCACTCGTTCGGGAATGATCAGGCAAGGCCTCGGGACAAGACGAAAGGGACGCCGAGACGAAATCAAGATCGAGATTGATGAGTCTCTTTTCTCTAGATAA

Protein sequence

MSRLFALLHLHPSMASLPFRLLPRSFSFSKSETLGTSLRASSTGSLSISTTSCPSSIPAEVIRKRRKESGSSTRSGMIRQGLGTRRKGRRDEIKIEIDESLFSR
Homology
[Close]
BLAST of Cp4.1LG10g08000 vs. TrEMBL
Match: A0A0A0KXY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308630 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-08
Identity = 59/116 (50.86%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 14  MASLPFRLL------PRSFSFSKSETLGTSLRASSTGSLSISTTSCPSSIPAEVI----- 73
           MASLPF LL      PR FSFSKSE LGTSLRASST SL+IST S PSSIPA        
Sbjct: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60

Query: 74  ----RKRRKESGSSTRSGMIRQGLGTRR------KGRRD------EIKIEIDESLF 103
                KR   S  + R     +G GT R        R+D      +IKIEIDESLF
Sbjct: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 116

[Close]
BLAST of Cp4.1LG10g08000 vs. NCBI nr
Match: gi|449460301|ref|XP_004147884.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 8.4e-08
Identity = 59/116 (50.86%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 14  MASLPFRLL------PRSFSFSKSETLGTSLRASSTGSLSISTTSCPSSIPAEVI----- 73
           MASLPF LL      PR FSFSKSE LGTSLRASST SL+IST S PSSIPA        
Sbjct: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60

Query: 74  ----RKRRKESGSSTRSGMIRQGLGTRR------KGRRD------EIKIEIDESLF 103
                KR   S  + R     +G GT R        R+D      +IKIEIDESLF
Sbjct: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 116

[Close]
BLAST of Cp4.1LG10g08000 vs. NCBI nr
Match: gi|659069340|ref|XP_008449316.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 58/121 (47.93%), Postives = 64/121 (52.89%), Query Frame = 1 

Query: 14  MASLPFRLL----------PRSFSFSKSETLGTSLRASSTGSLSISTTSCPSSIPAEVI- 73
           M SLPF LL          P  FSFSKSETLGTSLRASST SL+IST S PSSIPA    
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 74  --------RKRRKESGSSTRSGMIRQGLGTRR------KGRRD------EIKIEIDESLF 104
                    KR   S  + R     +G GT R        R+D      +IKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g08000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXY4_CUCSA5.8e-0850.86Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308630 PE=4 SV=1[more]
BLAST of Cp4.1LG10g08000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460301|ref|XP_004147884.1|8.4e-0850.86PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis sativus][more]
gi|659069340|ref|XP_008449316.1|3.2e-0747.93PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g08000.1Cp4.1LG10g08000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g08000CmaCh03G003550Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g08000CmoCh03G003690Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g08000Carg19994Silver-seed gourdcarcpeB0785
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g08000Cucumber (Chinese Long) v3cpecucB0073
Cp4.1LG10g08000Cucumber (Chinese Long) v3cpecucB0075
Cp4.1LG10g08000Cucumber (Chinese Long) v3cpecucB0090
Cp4.1LG10g08000Cucumber (Chinese Long) v3cpecucB0094
Cp4.1LG10g08000Wax gourdcpewgoB0068
Cp4.1LG10g08000Wax gourdcpewgoB0076
Cp4.1LG10g08000Wax gourdcpewgoB0085
Cp4.1LG10g08000Cucurbita pepo (Zucchini)cpecpeB072
Cp4.1LG10g08000Cucurbita pepo (Zucchini)cpecpeB074
Cp4.1LG10g08000Cucurbita pepo (Zucchini)cpecpeB081
Cp4.1LG10g08000Cucurbita pepo (Zucchini)cpecpeB084
Cp4.1LG10g08000Cucurbita pepo (Zucchini)cpecpeB093
Cp4.1LG10g08000Cucurbita pepo (Zucchini)cpecpeB094
Cp4.1LG10g08000Cucurbita pepo (Zucchini)cpecpeB105
Cp4.1LG10g08000Cucumber (Gy14) v1cgycpeB0095
Cp4.1LG10g08000Cucumber (Gy14) v1cgycpeB0482
Cp4.1LG10g08000Cucurbita maxima (Rimu)cmacpeB256
Cp4.1LG10g08000Cucurbita maxima (Rimu)cmacpeB701
Cp4.1LG10g08000Cucurbita maxima (Rimu)cmacpeB809
Cp4.1LG10g08000Cucurbita maxima (Rimu)cmacpeB862
Cp4.1LG10g08000Cucurbita moschata (Rifu)cmocpeB220
Cp4.1LG10g08000Cucurbita moschata (Rifu)cmocpeB265
Cp4.1LG10g08000Cucurbita moschata (Rifu)cmocpeB653
Cp4.1LG10g08000Cucurbita moschata (Rifu)cmocpeB654
Cp4.1LG10g08000Cucurbita moschata (Rifu)cmocpeB763
Cp4.1LG10g08000Cucurbita moschata (Rifu)cmocpeB802
Cp4.1LG10g08000Wild cucumber (PI 183967)cpecpiB063
Cp4.1LG10g08000Wild cucumber (PI 183967)cpecpiB065
Cp4.1LG10g08000Wild cucumber (PI 183967)cpecpiB079
Cp4.1LG10g08000Wild cucumber (PI 183967)cpecpiB082
Cp4.1LG10g08000Cucumber (Chinese Long) v2cpecuB068
Cp4.1LG10g08000Cucumber (Chinese Long) v2cpecuB070
Cp4.1LG10g08000Cucumber (Chinese Long) v2cpecuB084
Cp4.1LG10g08000Cucumber (Chinese Long) v2cpecuB086
Cp4.1LG10g08000Bottle gourd (USVL1VR-Ls)cpelsiB048
Cp4.1LG10g08000Bottle gourd (USVL1VR-Ls)cpelsiB061
Cp4.1LG10g08000Bottle gourd (USVL1VR-Ls)cpelsiB064
Cp4.1LG10g08000Watermelon (Charleston Gray)cpewcgB056
Cp4.1LG10g08000Watermelon (Charleston Gray)cpewcgB078
Cp4.1LG10g08000Watermelon (97103) v1cpewmB062
Cp4.1LG10g08000Watermelon (97103) v1cpewmB086
Cp4.1LG10g08000Watermelon (97103) v1cpewmB095
Cp4.1LG10g08000Melon (DHL92) v3.5.1cpemeB053
Cp4.1LG10g08000Silver-seed gourdcarcpeB0128
Cp4.1LG10g08000Cucumber (Gy14) v2cgybcpeB294
Cp4.1LG10g08000Cucumber (Gy14) v2cgybcpeB463
Cp4.1LG10g08000Cucumber (Gy14) v2cgybcpeB591
Cp4.1LG10g08000Cucumber (Gy14) v2cgybcpeB711
Cp4.1LG10g08000Melon (DHL92) v3.6.1cpemedB066
Cp4.1LG10g08000Melon (DHL92) v3.6.1cpemedB070
Cp4.1LG10g08000Silver-seed gourdcarcpeB0220
Cp4.1LG10g08000Silver-seed gourdcarcpeB0365
Cp4.1LG10g08000Silver-seed gourdcarcpeB0825
Cp4.1LG10g08000Silver-seed gourdcarcpeB1383