Cp4.1LG10g07740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g07740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG10 : 5452174 .. 5452740 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGAGAAACCAGAAAGGAGAAGATGAAGAAGAACGGTGGCGGCGGCGGCAGCGGGAGCGGCGGAGGGAAAAGGAGCAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGCGAGAACGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTAGTCCCCGGCGGCAACAAAATGGACACCGTCTCAATGCTCGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCGCCGCCGCCACCGCCGTCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCCCTGAAAACGAGGTTGTTAAAATGGAGGAGGCGTTCTTGCCTCATCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTTTGATGCTTACATGAACTTCTAA

mRNA sequence

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGAGAAACCAGAAAGGAGAAGATGAAGAAGAACGGTGGCGGCGGCGGCAGCGGGAGCGGCGGAGGGAAAAGGAGCAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGCGAGAACGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTAGTCCCCGGCGGCAACAAAATGGACACCGTCTCAATGCTCGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCGCCGCCGCCACCGCCGTCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCCCTGAAAACGAGGTTGTTAAAATGGAGGAGGCGTTCTTGCCTCATCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTTTGATGCTTACATGAACTTCTAA

Coding sequence (CDS)

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGAGAAACCAGAAAGGAGAAGATGAAGAAGAACGGTGGCGGCGGCGGCAGCGGGAGCGGCGGAGGGAAAAGGAGCAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGCGAGAACGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTAGTCCCCGGCGGCAACAAAATGGACACCGTCTCAATGCTCGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCGCCGCCGCCACCGCCGTCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCCCTGAAAACGAGGTTGTTAAAATGGAGGAGGCGTTCTTGCCTCATCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTTTGATGCTTACATGAACTTCTAA

Protein sequence

MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSSAAATAVNCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFMCSSFDAYMNF
Homology
[Close]
BLAST of Cp4.1LG10g07740 vs. Swiss-Prot
Match: BH140_ARATH (Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-25
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 1 

Query: 2   DYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVAA 61
           D++  + NP+S  ++S       R +          S +G  KRS+    LSTDPQSVAA
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK----------SETGNTKRSRSTSTLSTDPQSVAA 62

Query: 62  RERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPS 121
           R+RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++  + +
Sbjct: 63  RDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETT 114

Query: 122 SS 124
           SS
Sbjct: 123 SS 114

[Close]
BLAST of Cp4.1LG10g07740 vs. Swiss-Prot
Match: LAX_ORYSJ (Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica GN=LAX PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.7e-23
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 1 

Query: 33  GGGGGSGSGGGKRSKGVMKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLD 92
           G G G   GGG+R  G  KLSTDPQSVAARERRHRISDRF++L+SLVPGG+KMDTVSML+
Sbjct: 22  GLGEGRMRGGGRRRPGA-KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLE 81

Query: 93  EAIHYVKFLKTQIWLHQTMINFVDYDDPSSSSAAATAVNCPNSGIPV--------GGDMN 152
           +AIHYVKFLK Q+ LHQ  +  V +++    +  A A +  ++ + +         GD +
Sbjct: 82  QAIHYVKFLKAQVTLHQAAL--VQHEEGCQHADVAAAFSAADADLALELNHRHGGAGDDD 141

Query: 153 FVFPENEVVKMEEA 159
                 E+  M+EA
Sbjct: 142 AGMTTLEMAPMQEA 152

[Close]
BLAST of Cp4.1LG10g07740 vs. Swiss-Prot
Match: HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-17
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 1 

Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQ 109
           +++S DPQSVAAR RR RIS+R +ILQ LVPGG KMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL-- 182

Query: 110 TMINFVDYDDPSSSSAAATAV 131
            + N   Y  P     A+ AV
Sbjct: 183 -LNNNTGYTPPPPQDQASQAV 200

[Close]
BLAST of Cp4.1LG10g07740 vs. Swiss-Prot
Match: HEC1_ARATH (Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGG KMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]
BLAST of Cp4.1LG10g07740 vs. Swiss-Prot
Match: HEC2_ARATH (Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGG KMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]
BLAST of Cp4.1LG10g07740 vs. TrEMBL
Match: A0A0A0KXM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G312280 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.4e-62
Identity = 144/201 (71.64%), Postives = 158/201 (78.61%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY+FPASNPSSCGSSSGG GG   KEKMKKN    G   G GKRSKGV+KLSTDPQSVA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGG-KEKMKKNNNNHG---GAGKRSKGVVKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGG KMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD-- 120

Query: 121 SSSSAAATAVNCPNSGIP----VGGDM----NFVFPENEVVKMEEA-FLPHLDP---DNI 180
           S+SSAA +A    NSG P      G+     N ++P+N+VVKMEE  FLP LDP   +N+
Sbjct: 121 SNSSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNV 180

Query: 181 YFPSG-QDQFMCSSFDAYMNF 189
           YFPS  QDQF+ SS+D Y+NF
Sbjct: 181 YFPSDHQDQFISSSYDPYINF 195

[Close]
BLAST of Cp4.1LG10g07740 vs. TrEMBL
Match: A5BMK9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00110 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-32
Identity = 88/121 (72.73%), Postives = 95/121 (78.51%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY   +SNPSS  SSS  + G+ +K+              GGKRSKGV KLSTDPQSVA
Sbjct: 1   MDYP-SSSNPSSSLSSSVANIGKDKKK--------------GGKRSKGV-KLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGG KMDTVSML+EAIHYVK+LKTQIWLHQTMINFVD DDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLEEAIHYVKYLKTQIWLHQTMINFVD-DDP 104

Query: 121 S 122
           S
Sbjct: 121 S 104

[Close]
BLAST of Cp4.1LG10g07740 vs. TrEMBL
Match: A0A061EXZ5_THECC (Transcription factor bHLH140 OS=Theobroma cacao GN=TCM_021641 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 101/189 (53.44%), Postives = 112/189 (59.26%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY FP+  P+ C SSS    G       + N          GK++KG +KLSTDPQSVA
Sbjct: 1   MDY-FPS--PNLCSSSSFA--GSPSVANNRNNNNNSKEKKKAGKKTKGAVKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQS+VPGG KMDTVSMLDEAIHYVKFLKTQIWLHQ MINFVD DDP
Sbjct: 61  ARERRHRISDRFKILQSMVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQAMINFVD-DDP 120

Query: 121 SSSSAAATAVNCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHL---DPDNIYFPSGQDQF 180
           SS  A +          PV GD  F  P N       A  P      PD+ +    QD  
Sbjct: 121 SSFFAGS---------FPVQGD--FYSPNNTNPNPAAALQPSQLLPLPDSCF----QDDQ 168

Query: 181 MCSSFDAYM 187
               +D YM
Sbjct: 181 WTMPYDVYM 168

[Close]
BLAST of Cp4.1LG10g07740 vs. TrEMBL
Match: A0A0E3Z8Z0_GOSHI (ROX-like transcription factor OS=Gossypium hirsutum GN=ROX PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.9e-31
Identity = 102/193 (52.85%), Postives = 116/193 (60.10%), Query Frame = 1 

Query: 1   MDYSFPASNPSSC---GSSS----GGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLS 60
           MDY FP++N SS    GSSS      +     KEK K            GK+ KG +KLS
Sbjct: 1   MDY-FPSANFSSSFIDGSSSVTTTSNNSSSCSKEKKK-----------AGKKGKGAVKLS 60

Query: 61  TDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMIN 120
           TDPQSVAARERRHRISDRFKILQS+VPGG KMDTVSMLDEAIHYVKFLKTQIWLHQ MIN
Sbjct: 61  TDPQSVAARERRHRISDRFKILQSMVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQAMIN 120

Query: 121 FVDYDDPSSSSAAATAVNCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSG 180
           FV  DD SSS    T+     +  P         P   +  M+ + L  L PD+ +   G
Sbjct: 121 FV--DDDSSSLFLPTSFPVETNIYPSSN------PNPNLEPMQPSQLLPL-PDSCF--QG 168

Query: 181 QDQFMCSSFDAYM 187
             Q M   +DAYM
Sbjct: 181 PQQTM--PYDAYM 168

[Close]
BLAST of Cp4.1LG10g07740 vs. TrEMBL
Match: A0A0S3SX68_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G088200 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.9e-31
Identity = 94/183 (51.37%), Postives = 111/183 (60.66%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY+ PAS  S  GSSS     +  + K KK          G K+ KGV +LSTDPQSVA
Sbjct: 1   MDYTHPAS--SDAGSSS-----KANRSKEKK----------GAKKCKGV-RLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQS+VPGG+KMDTVSML+EAI YVK+LKTQIWLHQTMINF+D D+ 
Sbjct: 61  ARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFLD-DND 120

Query: 121 SSSSAAATAVNCPNSGIPVGGDMNFVFP-ENEVVKMEEAFLPHLDPDNIYFPSGQDQFMC 180
           S S    T    P+          F+FP +N  +       PHL P    F      +  
Sbjct: 121 SLSPMYLTDFYFPSD-----PSEQFIFPQQNPPLDHNMHNFPHLPPPQCSFHGEDTTYFD 159

Query: 181 SSF 183
           +SF
Sbjct: 181 ASF 159

[Close]
BLAST of Cp4.1LG10g07740 vs. TAIR10
Match: AT5G01310.1 (AT5G01310.1 APRATAXIN-like)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-26
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 1 

Query: 2   DYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVAA 61
           D++  + NP+S  ++S       R +          S +G  KRS+    LSTDPQSVAA
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK----------SETGNTKRSRSTSTLSTDPQSVAA 62

Query: 62  RERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPS 121
           R+RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++  + +
Sbjct: 63  RDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETT 114

Query: 122 SS 124
           SS
Sbjct: 123 SS 114

[Close]
BLAST of Cp4.1LG10g07740 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-18
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 1 

Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQ 109
           +++S DPQSVAAR RR RIS+R +ILQ LVPGG KMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL-- 182

Query: 110 TMINFVDYDDPSSSSAAATAV 131
            + N   Y  P     A+ AV
Sbjct: 183 -LNNNTGYTPPPPQDQASQAV 200

[Close]
BLAST of Cp4.1LG10g07740 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-18
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGG KMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]
BLAST of Cp4.1LG10g07740 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-18
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGG KMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]
BLAST of Cp4.1LG10g07740 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 1 

Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQ 109
           +K+STDPQ+VAAR+RR RIS++ ++LQ+LVPGG KMDT SMLDEA +Y+KFL+ Q+   +
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

Query: 110 TMINFVDYDDPSSSSAAATAVNCPNSGIPVGGDMNFVFPE 150
            +   +D  + S SSA  +      S +P+        PE
Sbjct: 333 NLRPKLDQTNLSFSSAPTSFPLFHPSFLPLQNPNQIHHPE 372

[Close]
BLAST of Cp4.1LG10g07740 vs. NCBI nr
Match: gi|700199237|gb|KGN54395.1| (hypothetical protein Csa_4G312280 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 144/201 (71.64%), Postives = 158/201 (78.61%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY+FPASNPSSCGSSSGG GG   KEKMKKN    G   G GKRSKGV+KLSTDPQSVA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGG-KEKMKKNNNNHG---GAGKRSKGVVKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGG KMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD-- 120

Query: 121 SSSSAAATAVNCPNSGIP----VGGDM----NFVFPENEVVKMEEA-FLPHLDP---DNI 180
           S+SSAA +A    NSG P      G+     N ++P+N+VVKMEE  FLP LDP   +N+
Sbjct: 121 SNSSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNV 180

Query: 181 YFPSG-QDQFMCSSFDAYMNF 189
           YFPS  QDQF+ SS+D Y+NF
Sbjct: 181 YFPSDHQDQFISSSYDPYINF 195

[Close]
BLAST of Cp4.1LG10g07740 vs. NCBI nr
Match: gi|659128456|ref|XP_008464215.1| (PREDICTED: transcription factor bHLH140-like [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.4e-61
Identity = 143/201 (71.14%), Postives = 158/201 (78.61%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY+FPASNPSSCGSSSGG GG   KEKMKKN     +  G GKRSKGV+KLSTDPQSVA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG---KEKMKKN--NNNNHGGAGKRSKGVVKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGG KMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD-- 120

Query: 121 SSSSAAATAVNCPNSGIP----VGGDM----NFVFPENEVVKMEEA-FLPHLDP---DNI 180
           S+SSAA +A    NSG P      G+     N ++P+N+VVKMEE  FLP LDP   +N+
Sbjct: 121 SNSSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNV 180

Query: 181 YFPSG-QDQFMCSSFDAYMNF 189
           YFPS  QDQF+ SS+D Y+NF
Sbjct: 181 YFPSDHQDQFISSSYDPYINF 194

[Close]
BLAST of Cp4.1LG10g07740 vs. NCBI nr
Match: gi|731398923|ref|XP_010653434.1| (PREDICTED: transcription factor LAX PANICLE-like [Vitis vinifera])

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 88/121 (72.73%), Postives = 95/121 (78.51%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY   +SNPSS  SSS  + G+ +K+              GGKRSKGV KLSTDPQSVA
Sbjct: 1   MDYP-SSSNPSSSLSSSVANIGKDKKK--------------GGKRSKGV-KLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGG KMDTVSML+EAIHYVK+LKTQIWLHQTMINFVD DDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLEEAIHYVKYLKTQIWLHQTMINFVD-DDP 104

Query: 121 S 122
           S
Sbjct: 121 S 104

[Close]
BLAST of Cp4.1LG10g07740 vs. NCBI nr
Match: gi|590628096|ref|XP_007026627.1| (Transcription factor bHLH140 [Theobroma cacao])

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 101/189 (53.44%), Postives = 112/189 (59.26%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY FP+  P+ C SSS    G       + N          GK++KG +KLSTDPQSVA
Sbjct: 1   MDY-FPS--PNLCSSSSFA--GSPSVANNRNNNNNSKEKKKAGKKTKGAVKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQS+VPGG KMDTVSMLDEAIHYVKFLKTQIWLHQ MINFVD DDP
Sbjct: 61  ARERRHRISDRFKILQSMVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQAMINFVD-DDP 120

Query: 121 SSSSAAATAVNCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHL---DPDNIYFPSGQDQF 180
           SS  A +          PV GD  F  P N       A  P      PD+ +    QD  
Sbjct: 121 SSFFAGS---------FPVQGD--FYSPNNTNPNPAAALQPSQLLPLPDSCF----QDDQ 168

Query: 181 MCSSFDAYM 187
               +D YM
Sbjct: 181 WTMPYDVYM 168

[Close]
BLAST of Cp4.1LG10g07740 vs. NCBI nr
Match: gi|951018445|ref|XP_014511795.1| (PREDICTED: transcription factor bHLH140-like [Vigna radiata var. radiata])

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-31
Identity = 92/183 (50.27%), Postives = 112/183 (61.20%), Query Frame = 1 

Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60
           MDY+ PAS+ ++  S       +T++ K KK          G K+ KGV +LSTDPQSVA
Sbjct: 1   MDYTHPASSDAASSS-------KTKRSKEKK----------GAKKCKGV-RLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQS+VPGG+KMDTVSML+EAI YVK+LKTQIWLHQTMINF+D D+ 
Sbjct: 61  ARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFLD-DND 120

Query: 121 SSSSAAATAVNCPNSGIPVGGDMNFVFP-ENEVVKMEEAFLPHLDPDNIYFPSGQDQFMC 180
           S S    T    P+          F+FP +N  +       PHL P    F      +  
Sbjct: 121 SISPMYLTDFYFPSD-----PSEQFIFPQQNPPLDHNMHNFPHLPPPQCSFHGEDTTYFD 159

Query: 181 SSF 183
           SSF
Sbjct: 181 SSF 159

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g07740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH140_ARATH2.1e-2554.92Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=3 SV=1[more]
LAX_ORYSJ5.7e-2350.00Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica GN=LAX PE=1 SV=... [more]
HEC3_ARATH4.7e-1760.49Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1[more]
HEC1_ARATH6.1e-1775.00Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1[more]
HEC2_ARATH6.1e-1775.00Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1[more]
BLAST of Cp4.1LG10g07740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM0_CUCSA7.4e-6271.64Uncharacterized protein OS=Cucumis sativus GN=Csa_4G312280 PE=4 SV=1[more]
A5BMK9_VITVI6.1e-3272.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00110 PE=4 SV=... [more]
A0A061EXZ5_THECC1.4e-3153.44Transcription factor bHLH140 OS=Theobroma cacao GN=TCM_021641 PE=4 SV=1[more]
A0A0E3Z8Z0_GOSHI8.9e-3152.85ROX-like transcription factor OS=Gossypium hirsutum GN=ROX PE=2 SV=1[more]
A0A0S3SX68_PHAAN8.9e-3151.37Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G088200 PE=... [more]
BLAST of Cp4.1LG10g07740 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G01310.11.2e-2654.92 APRATAXIN-like[more]
AT5G09750.12.6e-1860.49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G50330.13.5e-1875.00 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G67060.13.5e-1875.00 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G21330.11.7e-1746.00 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Cp4.1LG10g07740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199237|gb|KGN54395.1|1.1e-6171.64hypothetical protein Csa_4G312280 [Cucumis sativus][more]
gi|659128456|ref|XP_008464215.1|1.4e-6171.14PREDICTED: transcription factor bHLH140-like [Cucumis melo][more]
gi|731398923|ref|XP_010653434.1|8.8e-3272.73PREDICTED: transcription factor LAX PANICLE-like [Vitis vinifera][more]
gi|590628096|ref|XP_007026627.1|2.0e-3153.44Transcription factor bHLH140 [Theobroma cacao][more]
gi|951018445|ref|XP_014511795.1|3.3e-3150.27PREDICTED: transcription factor bHLH140-like [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g07740.1Cp4.1LG10g07740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 58..105
score: 4.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 61..101
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 58..107
score: 5.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 52..101
score: 15
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 57..112
score: 6.8
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 1..127
score: 6.1E-53coord: 161..174
score: 6.1
NoneNo IPR availablePANTHERPTHR12565:SF111SUBFAMILY NOT NAMEDcoord: 1..127
score: 6.1E-53coord: 161..174
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g07740Cucsa.130030Cucumber (Gy14) v1cgycpeB0343
Cp4.1LG10g07740CmaCh03G003380Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g07740CmaCh07G010810Cucurbita maxima (Rimu)cmacpeB868
Cp4.1LG10g07740CmoCh07G011310Cucurbita moschata (Rifu)cmocpeB808
Cp4.1LG10g07740CmoCh03G003510Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g07740Cla018085Watermelon (97103) v1cpewmB086
Cp4.1LG10g07740Csa4G312280Cucumber (Chinese Long) v2cpecuB070
Cp4.1LG10g07740MELO3C026008Melon (DHL92) v3.5.1cpemeB070
Cp4.1LG10g07740ClCG04G006850Watermelon (Charleston Gray)cpewcgB078
Cp4.1LG10g07740CSPI04G16040Wild cucumber (PI 183967)cpecpiB065
Cp4.1LG10g07740Lsi01G015640Bottle gourd (USVL1VR-Ls)cpelsiB048
Cp4.1LG10g07740MELO3C026008.2Melon (DHL92) v3.6.1cpemedB089
Cp4.1LG10g07740CsaV3_4G026430Cucumber (Chinese Long) v3cpecucB0075
Cp4.1LG10g07740Bhi03G001708Wax gourdcpewgoB0085
Cp4.1LG10g07740CsGy4G015350Cucumber (Gy14) v2cgybcpeB463
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g07740Cp4.1LG19g02630Cucurbita pepo (Zucchini)cpecpeB080
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g07740Cucumber (Chinese Long) v3cpecucB0073
Cp4.1LG10g07740Cucumber (Chinese Long) v3cpecucB0094
Cp4.1LG10g07740Wax gourdcpewgoB0070
Cp4.1LG10g07740Wax gourdcpewgoB0076
Cp4.1LG10g07740Cucurbita pepo (Zucchini)cpecpeB074
Cp4.1LG10g07740Cucurbita pepo (Zucchini)cpecpeB093
Cp4.1LG10g07740Cucurbita pepo (Zucchini)cpecpeB094
Cp4.1LG10g07740Cucurbita pepo (Zucchini)cpecpeB105
Cp4.1LG10g07740Cucumber (Gy14) v1cgycpeB0482
Cp4.1LG10g07740Cucurbita maxima (Rimu)cmacpeB256
Cp4.1LG10g07740Cucurbita maxima (Rimu)cmacpeB701
Cp4.1LG10g07740Cucurbita maxima (Rimu)cmacpeB809
Cp4.1LG10g07740Cucurbita maxima (Rimu)cmacpeB862
Cp4.1LG10g07740Cucurbita moschata (Rifu)cmocpeB220
Cp4.1LG10g07740Cucurbita moschata (Rifu)cmocpeB265
Cp4.1LG10g07740Cucurbita moschata (Rifu)cmocpeB654
Cp4.1LG10g07740Cucurbita moschata (Rifu)cmocpeB763
Cp4.1LG10g07740Cucurbita moschata (Rifu)cmocpeB802
Cp4.1LG10g07740Wild cucumber (PI 183967)cpecpiB063
Cp4.1LG10g07740Wild cucumber (PI 183967)cpecpiB082
Cp4.1LG10g07740Cucumber (Chinese Long) v2cpecuB068
Cp4.1LG10g07740Cucumber (Chinese Long) v2cpecuB086
Cp4.1LG10g07740Bottle gourd (USVL1VR-Ls)cpelsiB061
Cp4.1LG10g07740Bottle gourd (USVL1VR-Ls)cpelsiB064
Cp4.1LG10g07740Watermelon (Charleston Gray)cpewcgB056
Cp4.1LG10g07740Watermelon (97103) v1cpewmB062
Cp4.1LG10g07740Watermelon (97103) v1cpewmB095
Cp4.1LG10g07740Melon (DHL92) v3.5.1cpemeB053
Cp4.1LG10g07740Cucumber (Gy14) v2cgybcpeB294
Cp4.1LG10g07740Cucumber (Gy14) v2cgybcpeB711
Cp4.1LG10g07740Melon (DHL92) v3.6.1cpemedB066
Cp4.1LG10g07740Melon (DHL92) v3.6.1cpemedB070
Cp4.1LG10g07740Silver-seed gourdcarcpeB0220
Cp4.1LG10g07740Silver-seed gourdcarcpeB0365
Cp4.1LG10g07740Silver-seed gourdcarcpeB0785
Cp4.1LG10g07740Silver-seed gourdcarcpeB0825
Cp4.1LG10g07740Silver-seed gourdcarcpeB1383