Cp4.1LG10g06990 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g06990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane protein 18
Location	Cp4.1LG10 : 6150237 .. 6152214 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCTATTGACTGGAAGGTAAAATTCAATCGAAATCGAGAACTCTCATCGGATCTGGTGTGTGAATTTTTATATTATTTTTATGTATTTTTTTGTTTAATTTTGCAGGAACCTTGGTTGATCGGATTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACGTATGATTATTGCTTTTATTTCTCGTTATTCATTTATATTTTTCTGAAATGTATTAGCATTGTTCATGGATGTGCAATGTTGAGATGTTTGATTGCTGTTCATATTGCATCCTCTGTACTGTCAAAATAGTGAGTTCTAGTCTAGGAATTTAGGTTTGAAAACTTCACGAGCTTAGAGATGAATTCTGAGGTTCAAATATCCTTTTGCAAATGATTTGCTGCATCAAGGCTGCAATTATAGATAATTACATTTGCAGATTGGAATTAAAGTCGGTGATCGATGTTTATGATTTCCAACCATAAAGCTTTTTTGATGCTTGTATACATGAATGTGGATACAATCCATATTCACATTTTGCATGTTGATGTGTACGTATTCATGTATTTCTTAATTGCTGGTCCTTTCATTCTTGGAGAATACCCTTTTTGCATTTGTAACGGCTCAAGCCCACCACTGGCAAATATTATCCTCTTTGGGTTTTGCCTTTCGGGAATGCGTATGCTAGGGAGAGATTTCCACATCCTTATAAAAAATGCTTCATTCTCCTCCCAACCAATATGGAATCTCACAATCCACCCCCCCTTCGGGGCCCAACGTCCTCGCTACTACTCGTTCCCTCCTCCAATCGATGTGGGACCCCCTAATCCACCCCCCTTCAGGGCCCAACGTCCTTGCCGGTACATCGCCTCGTGTCCACCCCCCTTCGGGGTTTAGCTTCCTCGCTGGCATATCGTTTGGTGTACACCCCCTTTGGAGTTCAACGTCCTTGTTGGCACACCGCCCGATGTTTGGCTTTGATGCCATTTGTAACGGCCCAAACCCATTGCAAGCAGAGATTGTCCTCTTTAGCAAAAAATTGGCATTCCAATCAACAAAAATATTCCTTTTCTTTTTACTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTATTTATAAGGGTGTGAAAACCTCTCCCTAGCAGACACGTTTTAAAAAACGTTGAGAGGAAGCTCGAAAGGGAAATCCCAAAAATAGTAATATCTGCTAGCGGTGAGTTTAGGCGATTACTGTATTCTACAAAAACCCTTAAAAACCCTTTCATGTTTGTTATACATTTTCCTATGTTCACAATCATATTTTGCAAGTCTATATGCACATTTTTTTTCATGGATTTCTCAACTCCAATTGTTCTTCATTTCAAGTACAAGAAATCCTTATTTGGAGTACTTACATACTTGTATTTGTAATGCAGTAGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCCTAATTTCAATGATAATTCTGGCAAGTACTCGTTATTACTTCTTTTCCTCATGTCCCGGATGAACAACCCCATACTATCCAATTGCCCCATCACATTGAAGGATAATTTCTCTGTCGTTTGTTGTCTAGTTTTCCACGTCAAGAACACTTAACTGAACTCTCATTTCTGTATGGCAGATAAACACACTTTTTACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGTCTAAAGAAGACTAA

mRNA sequence

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCTATTGACTGGAAGATAAACACACTTTTTACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGTCTAAAGAAGACTAA

Coding sequence (CDS)

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCTATTGACTGGAAGATAAACACACTTTTTACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGTCTAAAGAAGACTAA

Protein sequence

MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKINTLFTLCYLVVRWKRAELRNRARLSQSKED

Homology

[Close]

BLAST of Cp4.1LG10g06990 vs. TrEMBL
Match: A0A103XZZ0_CYNCS (Transmembrane protein 18 OS=Cynara cardunculus var. scolymus GN=Ccrd_021766 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-21
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           M+EL++AM +HMDQM ++V+KLSSELR GL+PA+DNFIGFFHAIDWK             
Sbjct: 1   MDELKTAMNDHMDQMQEIVEKLSSELRIGLQPAMDNFIGFFHAIDWKVHLSTWIYSGQNY 60

Query: 61  ------------------------INTLFTLCYLVVRWKRAELRNRARLSQSKED 79
                                   +NTLF+LC L+V+WKRAELR+RARLS +K+D
Sbjct: 61  FDRHGVFLSVLWSGPLLVFSMIILVNTLFSLCQLIVKWKRAELRHRARLSTTKQD 115

[Close]

BLAST of Cp4.1LG10g06990 vs. TrEMBL
Match: A0A0A0LN62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431140 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.7e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK 48
          M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWK
Sbjct: 1  MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWK 47

[Close]

BLAST of Cp4.1LG10g06990 vs. TrEMBL
Match: V4T8P2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002730mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-15
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK 48
          MEELRSA E HMDQMADLVQKLS+ELR+GLRPA+DNFIGFFHAIDWK
Sbjct: 1  MEELRSAAEAHMDQMADLVQKLSAELRTGLRPALDNFIGFFHAIDWK 47

[Close]

BLAST of Cp4.1LG10g06990 vs. TrEMBL
Match: U5FW19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11920g PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.8e-15
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDW 47
          MEEL+SA+E HMDQMADLVQKLSSELRSG RPA+DNFIGFFHAIDW
Sbjct: 1  MEELKSALEAHMDQMADLVQKLSSELRSGFRPAIDNFIGFFHAIDW 46

[Close]

BLAST of Cp4.1LG10g06990 vs. TrEMBL
Match: M5W6Q5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012580mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-15
Identity = 40/47 (85.11%), Postives = 47/47 (100.00%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK 48
          ME+LRSAMEEHM+QMADLVQKLS+ELRSGL+PA+DNF+GFFHAI+WK
Sbjct: 1  MEQLRSAMEEHMEQMADLVQKLSAELRSGLKPALDNFLGFFHAINWK 47

[Close]

BLAST of Cp4.1LG10g06990 vs. TAIR10
Match: AT1G34350.2 (AT1G34350.2 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-14
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK 48
          MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWK
Sbjct: 1  MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWK 47

[Close]

BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: gi|976913733|gb|KVH99976.1| (Transmembrane protein 18 [Cynara cardunculus var. scolymus])

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-21
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           M+EL++AM +HMDQM ++V+KLSSELR GL+PA+DNFIGFFHAIDWK             
Sbjct: 1   MDELKTAMNDHMDQMQEIVEKLSSELRIGLQPAMDNFIGFFHAIDWKVHLSTWIYSGQNY 60

Query: 61  ------------------------INTLFTLCYLVVRWKRAELRNRARLSQSKED 79
                                   +NTLF+LC L+V+WKRAELR+RARLS +K+D
Sbjct: 61  FDRHGVFLSVLWSGPLLVFSMIILVNTLFSLCQLIVKWKRAELRHRARLSTTKQD 115

[Close]

BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: gi|659125677|ref|XP_008462809.1| (PREDICTED: transmembrane protein 18 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK 48
          M+ELRSAMEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWK
Sbjct: 1  MDELRSAMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWK 47

[Close]

BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: gi|778673730|ref|XP_011650049.1| (PREDICTED: transmembrane protein 18 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK 48
          M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWK
Sbjct: 1  MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWK 47

[Close]

BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: gi|743887469|ref|XP_011038158.1| (PREDICTED: transmembrane protein 18 [Populus euphratica])

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDW 47
          MEEL+SA+E HMDQMADLVQKLSSELRSGLRPA+DNFIGFFHAIDW
Sbjct: 1  MEELKSALEAHMDQMADLVQKLSSELRSGLRPAIDNFIGFFHAIDW 46

[Close]

BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: gi|567884143|ref|XP_006434630.1| (hypothetical protein CICLE_v10002730mg [Citrus clementina])

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-15
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1


Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK 48
          MEELRSA E HMDQMADLVQKLS+ELR+GLRPA+DNFIGFFHAIDWK
Sbjct: 1  MEELRSAAEAHMDQMADLVQKLSAELRTGLRPALDNFIGFFHAIDWK 47

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g06990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g06990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103XZZ0_CYNCS	3.5e-21	49.57	Transmembrane protein 18 OS=Cynara cardunculus var. scolymus GN=Ccrd_021766 PE=4...	[more]
A0A0A0LN62_CUCSA	5.7e-16	89.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431140 PE=4 SV=1	[more]
V4T8P2_9ROSI	3.7e-15	89.36	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002730mg PE=4 SV=1	[more]
U5FW19_POPTR	4.8e-15	89.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11920g PE=4 SV=1	[more]
M5W6Q5_PRUPE	6.3e-15	85.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012580mg PE=4 SV=1	[more]

BLAST of Cp4.1LG10g06990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34350.2	1.3e-14	72.34	unknown protein	[more]

BLAST of Cp4.1LG10g06990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976913733\|gb\|KVH99976.1\|	5.0e-21	49.57	Transmembrane protein 18 [Cynara cardunculus var. scolymus]	[more]
gi\|659125677\|ref\|XP_008462809.1\|	2.8e-16	91.49	PREDICTED: transmembrane protein 18 [Cucumis melo]	[more]
gi\|778673730\|ref\|XP_011650049.1\|	8.2e-16	89.36	PREDICTED: transmembrane protein 18 [Cucumis sativus]	[more]
gi\|743887469\|ref\|XP_011038158.1\|	2.4e-15	91.30	PREDICTED: transmembrane protein 18 [Populus euphratica]	[more]
gi\|567884143\|ref\|XP_006434630.1\|	5.3e-15	89.36	hypothetical protein CICLE_v10002730mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g06990.1	Cp4.1LG10g06990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 1..21 scor
None	No IPR available	PANTHER	PTHR22593	FAMILY NOT NAMED	coord: 1..47 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g06990	CmaCh03G002330	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g06990	CmoCh03G002460	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g06990	Carg19571	Silver-seed gourd	carcpeB0891

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g06990	Wax gourd	cpewgoB0085
Cp4.1LG10g06990	Cucurbita pepo (Zucchini)	cpecpeB077
Cp4.1LG10g06990	Cucumber (Gy14) v1	cgycpeB0874
Cp4.1LG10g06990	Cucurbita maxima (Rimu)	cmacpeB867
Cp4.1LG10g06990	Cucurbita moschata (Rifu)	cmocpeB807
Cp4.1LG10g06990	Wild cucumber (PI 183967)	cpecpiB076
Cp4.1LG10g06990	Cucumber (Chinese Long) v2	cpecuB079
Cp4.1LG10g06990	Bottle gourd (USVL1VR-Ls)	cpelsiB048
Cp4.1LG10g06990	Watermelon (Charleston Gray)	cpewcgB072
Cp4.1LG10g06990	Watermelon (97103) v1	cpewmB079
Cp4.1LG10g06990	Melon (DHL92) v3.5.1	cpemeB070
Cp4.1LG10g06990	Cucumber (Gy14) v2	cgybcpeB473
Cp4.1LG10g06990	Melon (DHL92) v3.6.1	cpemedB089
Cp4.1LG10g06990	Cucumber (Chinese Long) v3	cpecucB0085