Cp4.1LG10g06540 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG10g06540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING-H2 finger protein ATL73
LocationCp4.1LG10 : 171687 .. 172103 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCTCTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGCGCCGTTGTTTACACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTCGGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACATCACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA

mRNA sequence

ATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCTCTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGCGCCGTTGTTTACACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTCGGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACATCACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA

Coding sequence (CDS)

ATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCTCTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGCGCCGTTGTTTACACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTCGGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACATCACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA

Protein sequence

MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQASAQAPQGFCYFYTSHSVMSTKAAQINKQYT
BLAST of Cp4.1LG10g06540 vs. TrEMBL
Match: A0A0A0KJ24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526420 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 1

Query: 1  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTML 60
          ML SS+ EPS  P+PS NP PS+S   PHE   G NFNL+V V AIVCAVV TLGLNTML
Sbjct: 1  MLASSFMEPS--PSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTML 60

Query: 61 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 95
           CILQCANH+LRQT QWVALRGLNSGMKKQDM++
Sbjct: 61 ICILQCANHSLRQTVQWVALRGLNSGMKKQDMVA 92

BLAST of Cp4.1LG10g06540 vs. TrEMBL
Match: E5GCL9_CUCME (Ring zinc finger OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1

Query: 28 PHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGM 87
          P E E G NFNL+V V AIVCAVV TLGLNTML CILQCANH+LRQT QWVALRGLNSGM
Sbjct: 3  PREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSGM 62

Query: 88 KKQDMMS 95
          KKQD+++
Sbjct: 63 KKQDVVA 69

BLAST of Cp4.1LG10g06540 vs. TrEMBL
Match: A0A151S628_CAJCA (RING-H2 finger protein ATL5B OS=Cajanus cajan GN=KK1_027979 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 1

Query: 27 YPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSG 86
          +PH+ +Q   F+ +V VAAI+CA V  LGLNTML C+ QCA   L Q  QW+A R LNSG
Sbjct: 19 HPHDHDQVGGFDWMVLVAAILCAFVCALGLNTMLQCVFQCATRVLTQPRQWIASRRLNSG 78

Query: 87 MKKQDMMS 95
          +KK++M++
Sbjct: 79 LKKKEMVA 86

BLAST of Cp4.1LG10g06540 vs. TrEMBL
Match: V7B303_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G242500g PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = 1

Query: 1  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTML 60
          M+G +  E S    PS +P+ +     P   E   + NL+V +AAIVCA +  LGLNTML
Sbjct: 1  MIGETEAE-SPLGAPSMSPMTAAKPCTPSPSEH--SINLMVILAAIVCACLCALGLNTML 60

Query: 61 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 95
           C+ QCAN  L Q FQW+A R LNSG+KK ++++
Sbjct: 61 QCVFQCANRVLTQPFQWIASRRLNSGLKKTEVVA 91

BLAST of Cp4.1LG10g06540 vs. TrEMBL
Match: G7INF2_MEDTR (Anaphase-promoting complex subunit 11 RING-H2 finger protein OS=Medicago truncatula GN=MTR_2g035800 PE=4 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 14  TPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTMLTCILQCANHTLRQ 73
           TP+ +P+ S     P    QG   N +V VAAIVCA++  LGLNTML C+ QCAN  L +
Sbjct: 8   TPTISPMISK----PCNPPQGYKLNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTE 67

Query: 74  TFQWVALRGLNSGMKKQDMMSTKAAV 100
             QW+A R  NSG+KK++M++   ++
Sbjct: 68  PLQWIATRRRNSGLKKKEMVALPTSI 89

BLAST of Cp4.1LG10g06540 vs. NCBI nr
Match: gi|778721713|ref|XP_004134885.2| (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.7e-28
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 1

Query: 1  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTML 60
          ML SS+ EPS  P+PS NP PS+S   PHE   G NFNL+V V AIVCAVV TLGLNTML
Sbjct: 1  MLASSFMEPS--PSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTML 60

Query: 61 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 95
           CILQCANH+LRQT QWVALRGLNSGMKKQDM++
Sbjct: 61 ICILQCANHSLRQTVQWVALRGLNSGMKKQDMVA 92

BLAST of Cp4.1LG10g06540 vs. NCBI nr
Match: gi|659077979|ref|XP_008439485.1| (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-27
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 1

Query: 1  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTML 60
          ML SS+ EPSSSP  S NP PS+S   P E E G NFNL+V V AIVCAVV TLGLNTML
Sbjct: 1  MLTSSFMEPSSSP--SLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTML 60

Query: 61 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 95
           CILQCANH+LRQT QWVALRGLNSGMKKQD+++
Sbjct: 61 ICILQCANHSLRQTVQWVALRGLNSGMKKQDVVA 92

BLAST of Cp4.1LG10g06540 vs. NCBI nr
Match: gi|307136410|gb|ADN34219.1| (ring zinc finger [Cucumis melo subsp. melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1

Query: 28 PHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGM 87
          P E E G NFNL+V V AIVCAVV TLGLNTML CILQCANH+LRQT QWVALRGLNSGM
Sbjct: 3  PREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSGM 62

Query: 88 KKQDMMS 95
          KKQD+++
Sbjct: 63 KKQDVVA 69

BLAST of Cp4.1LG10g06540 vs. NCBI nr
Match: gi|1012339035|gb|KYP50275.1| (RING-H2 finger protein ATL5B [Cajanus cajan])

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 1

Query: 27 YPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSG 86
          +PH+ +Q   F+ +V VAAI+CA V  LGLNTML C+ QCA   L Q  QW+A R LNSG
Sbjct: 19 HPHDHDQVGGFDWMVLVAAILCAFVCALGLNTMLQCVFQCATRVLTQPRQWIASRRLNSG 78

Query: 87 MKKQDMMS 95
          +KK++M++
Sbjct: 79 LKKKEMVA 86

BLAST of Cp4.1LG10g06540 vs. NCBI nr
Match: gi|698419750|ref|XP_009797582.1| (PREDICTED: RING-H2 finger protein ATL73-like [Nicotiana sylvestris])

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1

Query: 9  PSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVYTLGLNTMLTCILQCAN 68
          P+ SPT      P L    PH  E   NFNL V +AA++CA++  LGLN+ML C+LQC +
Sbjct: 7  PTQSPTILEPKTPFLD--QPHNTENALNFNLAVIIAALICALLCALGLNSMLQCVLQCTH 66

Query: 69 HTLRQTFQWVALRGLNSGMKKQDMMS 95
           T+ +  +WVA + +N+G+KK+DM++
Sbjct: 67 RTISEPVEWVASKRMNTGLKKKDMVA 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJ24_CUCSA3.9e-2873.40Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526420 PE=4 SV=1[more]
E5GCL9_CUCME1.0e-2079.10Ring zinc finger OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A151S628_CAJCA2.0e-1152.94RING-H2 finger protein ATL5B OS=Cajanus cajan GN=KK1_027979 PE=4 SV=1[more]
V7B303_PHAVU4.4e-1145.74Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G242500g PE=4 SV=1[more]
G7INF2_MEDTR5.7e-1145.35Anaphase-promoting complex subunit 11 RING-H2 finger protein OS=Medicago truncat... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778721713|ref|XP_004134885.2|5.7e-2873.40PREDICTED: RING-H2 finger protein ATL74-like [Cucumis sativus][more]
gi|659077979|ref|XP_008439485.1|4.8e-2773.40PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo][more]
gi|307136410|gb|ADN34219.1|1.5e-2079.10ring zinc finger [Cucumis melo subsp. melo][more]
gi|1012339035|gb|KYP50275.1|2.8e-1152.94RING-H2 finger protein ATL5B [Cajanus cajan][more]
gi|698419750|ref|XP_009797582.1|4.8e-1144.19PREDICTED: RING-H2 finger protein ATL73-like [Nicotiana sylvestris][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g06540.1Cp4.1LG10g06540.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g06540Wax gourdcpewgoB0098
Cp4.1LG10g06540Cucurbita pepo (Zucchini)cpecpeB083
Cp4.1LG10g06540Cucurbita maxima (Rimu)cmacpeB861
Cp4.1LG10g06540Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g06540Cucurbita moschata (Rifu)cmocpeB801
Cp4.1LG10g06540Watermelon (Charleston Gray)cpewcgB069
Cp4.1LG10g06540Watermelon (97103) v1cpewmB069
Cp4.1LG10g06540Melon (DHL92) v3.5.1cpemeB061
Cp4.1LG10g06540Melon (DHL92) v3.6.1cpemedB081
Cp4.1LG10g06540Silver-seed gourdcarcpeB1028