Cp4.1LG10g05980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g05980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionJasmonate ZIM-domain protein 8
LocationCp4.1LG10 : 575265 .. 576230 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCTATTATTATTATTATTACTTCAGAGGCCTGTTGTCATGAAAACTAACTCCTCTCTCAGAATGAGGCGAAACTGCAACCTGGAACTTCGTCTTTCTCCCACCTCCTCCGCTATCGCCGCCGTCTCCGATCAATCCTCCGCAGCCGTCGCCGCCGCTAACGCCAGCCCTCAAAGCCAACAACTCACCATCTTCTACAACGGTCGGATCTGCGTCTGTGACGCTACAGAGCTTCAGGTAACAAAACGAAACCAACATCTTTTTTTTCTTTTTTGCTGTTGTGTAGTACGGAACTTTCCTACACCCGGGGTTGCCTTTCTTCTGAAGAACCACGTGGCGTCCACTGATTGGATTGGATGTCTGTGAGCTGTGACTGTCTGCAACCTTTTTTTTCCACTAAAATCGTCGTTCAATATGAATTCTTCATGCGACACTACGCATGGGTTGGTTTCTGTCGGGAAGCCGACACCAACCCCTCGAACAGACTCATTTTAATTGAGGTTCGACTAATTTTTCTCGAGCCTTGGAACAAAATATAAAATACACTATTTATTCGACATTTGAGTCGTTTTTTTATCACACCTTCAAAACTCACAATTTTTTATTCAATTGATACGACTAAGTTAAGGGCATGACTCTCAGTCCATTAATCACTATTTTCCATAATGTCATGATATAATTCACTTTTAGCATAAGTTTTGATGGATTTATTCTTGATTTTCTCAGAAGGTCTCGAATGAATATGTATTCCCCCGACAACCCTCAACAAATTTATAATTTTGTTAGGGATGAATATTGCAGGCAATAGCGATTTTAAAGTTGGCGACTAGAGAAATGGAGGAGAAGGGTCCGAACGAAACGCCGTGGCCGATACTACAGCAGTCTCCGGCGGCTGTAACTCCGACCACCCCGGGGCTCTCGATGAAGAGATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATAG

mRNA sequence

ATTTCTATTATTATTATTATTACTTCAGAGGCCTGTTGTCATGAAAACTAACTCCTCTCTCAGAATGAGGCGAAACTGCAACCTGGAACTTCGTCTTTCTCCCACCTCCTCCGCTATCGCCGCCGTCTCCGATCAATCCTCCGCAGCCGTCGCCGCCGCTAACGCCAGCCCTCAAAGCCAACAACTCACCATCTTCTACAACGGTCGGATCTGCGTCTGTGACGCTACAGAGCTTCAGAGAAATGGAGGAGAAGGGTCCGAACGAAACGCCGTGGCCGATACTACAGCAGTCTCCGGCGGCTGTAACTCCGACCACCCCGGGGCTCTCGATGAAGAGATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATAG

Coding sequence (CDS)

ATGAAAACTAACTCCTCTCTCAGAATGAGGCGAAACTGCAACCTGGAACTTCGTCTTTCTCCCACCTCCTCCGCTATCGCCGCCGTCTCCGATCAATCCTCCGCAGCCGTCGCCGCCGCTAACGCCAGCCCTCAAAGCCAACAACTCACCATCTTCTACAACGGTCGGATCTGCGTCTGTGACGCTACAGAGCTTCAGAGAAATGGAGGAGAAGGGTCCGAACGAAACGCCGTGGCCGATACTACAGCAGTCTCCGGCGGCTGTAACTCCGACCACCCCGGGGCTCTCGATGAAGAGATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATAG

Protein sequence

MKTNSSLRMRRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVCDATELQRNGGEGSERNAVADTTAVSGGCNSDHPGALDEEIAAKISAEEEA
Homology
[Close]
BLAST of Cp4.1LG10g05980 vs. TrEMBL
Match: A0A0A0KI51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523460 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-13
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 4  NSSLRMRRNCNLELRLSPTSSA---IAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVC 63
          ++SLRMRRNCNLELRLSPT +     AAVSDQ S   A A+ SPQSQQLTIFYNGRICVC
Sbjct: 5  STSLRMRRNCNLELRLSPTPNPNPNPAAVSDQPS---ATADDSPQSQQLTIFYNGRICVC 64

Query: 64 DATELQ 67
          D TELQ
Sbjct: 65 DVTELQ 67

[Close]
BLAST of Cp4.1LG10g05980 vs. TrEMBL
Match: A0A0D2UNW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045300 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  MRRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVCDATELQ 67
          MRRNCNLELRL P+S +     ++SS      N   Q QQLTIFYNGR+CVCD TE+Q
Sbjct: 1  MRRNCNLELRLHPSSYSGGDRVEESSE-----NPENQQQQLTIFYNGRVCVCDVTEIQ 53

[Close]
BLAST of Cp4.1LG10g05980 vs. TrEMBL
Match: A0A0D4D5X5_GOSBA (JAZ13 OS=Gossypium barbadense PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  MRRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVCDATELQ 67
          MRRNCNLELRL P+S +     ++SS      N   Q QQLTIFYNGR+CVCD TE+Q
Sbjct: 1  MRRNCNLELRLHPSSYSGGDRVEESSE-----NPENQQQQLTIFYNGRVCVCDVTEIQ 53

[Close]
BLAST of Cp4.1LG10g05980 vs. TrEMBL
Match: A0A0B0PDL4_GOSAR (Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_06859 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  MRRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVCDATELQ 67
          MRRNCNLELRL P+S +     ++SS      N   Q QQLTIFYNGR+CVCD TE+Q
Sbjct: 1  MRRNCNLELRLHPSSYSGGDRVEESSE-----NPENQQQQLTIFYNGRVCVCDVTEIQ 53

[Close]
BLAST of Cp4.1LG10g05980 vs. TrEMBL
Match: A5AT04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03790 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 10 RRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQS----QQLTIFYNGRICVCDATEL 67
          RRNCNLELRL P ++  ++     +  +     SPQ     QQLTIFYNGRICVCD TEL
Sbjct: 3  RRNCNLELRLLPPNTDYSSPQHHHNMMMETGRGSPQEQQQQQQLTIFYNGRICVCDVTEL 62

[Close]
BLAST of Cp4.1LG10g05980 vs. NCBI nr
Match: gi|778721411|ref|XP_004134648.2| (PREDICTED: protein TIFY 5A [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 4  NSSLRMRRNCNLELRLSPTSSA---IAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVC 63
          ++SLRMRRNCNLELRLSPT +     AAVSDQ S   A A+ SPQSQQLTIFYNGRICVC
Sbjct: 5  STSLRMRRNCNLELRLSPTPNPNPNPAAVSDQPS---ATADDSPQSQQLTIFYNGRICVC 64

Query: 64 DATELQ 67
          D TELQ
Sbjct: 65 DVTELQ 67

[Close]
BLAST of Cp4.1LG10g05980 vs. NCBI nr
Match: gi|659078241|ref|XP_008439622.1| (PREDICTED: protein TIFY 5A [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 50/68 (73.53%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 1  MKTNS-SLRMRRNCNLELRLSPT-SSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRIC 60
          MK NS SLRMRRN NLELRLSPT SSA AA +  S      A  SPQSQQLTIFYNGRIC
Sbjct: 1  MKVNSTSLRMRRNYNLELRLSPTYSSAAAATASVSGNPSPTAYGSPQSQQLTIFYNGRIC 60

Query: 61 VCDATELQ 67
          VCD TELQ
Sbjct: 61 VCDVTELQ 68

[Close]
BLAST of Cp4.1LG10g05980 vs. NCBI nr
Match: gi|767812344|gb|AJT58403.1| (JAZ13 [Gossypium barbadense])

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-07
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  MRRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVCDATELQ 67
          MRRNCNLELRL P+S +     ++SS      N   Q QQLTIFYNGR+CVCD TE+Q
Sbjct: 1  MRRNCNLELRLHPSSYSGGDRVEESSE-----NPENQQQQLTIFYNGRVCVCDVTEIQ 53

[Close]
BLAST of Cp4.1LG10g05980 vs. NCBI nr
Match: gi|728845090|gb|KHG24533.1| (Protein TIFY 5A -like protein [Gossypium arboreum])

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-07
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  MRRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVCDATELQ 67
          MRRNCNLELRL P+S +     ++SS      N   Q QQLTIFYNGR+CVCD TE+Q
Sbjct: 1  MRRNCNLELRLHPSSYSGGDRVEESSE-----NPENQQQQLTIFYNGRVCVCDVTEIQ 53

[Close]
BLAST of Cp4.1LG10g05980 vs. NCBI nr
Match: gi|823250296|ref|XP_012457744.1| (PREDICTED: protein TIFY 5A-like [Gossypium raimondii])

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-07
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  MRRNCNLELRLSPTSSAIAAVSDQSSAAVAAANASPQSQQLTIFYNGRICVCDATELQ 67
          MRRNCNLELRL P+S +     ++SS      N   Q QQLTIFYNGR+CVCD TE+Q
Sbjct: 1  MRRNCNLELRLHPSSYSGGDRVEESSE-----NPENQQQQLTIFYNGRVCVCDVTEIQ 53

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g05980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g05980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI51_CUCSA2.9e-1374.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523460 PE=4 SV=1[more]
A0A0D2UNW8_GOSRA3.1e-0758.62Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045300 PE=4 SV=1[more]
A0A0D4D5X5_GOSBA3.1e-0758.62JAZ13 OS=Gossypium barbadense PE=2 SV=1[more]
A0A0B0PDL4_GOSAR3.1e-0758.62Protein TIFY 5A-like protein OS=Gossypium arboreum GN=F383_06859 PE=4 SV=1[more]
A5AT04_VITVI2.0e-0654.10Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03790 PE=4 SV=... [more]
BLAST of Cp4.1LG10g05980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g05980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778721411|ref|XP_004134648.2|4.1e-1374.24PREDICTED: protein TIFY 5A [Cucumis sativus][more]
gi|659078241|ref|XP_008439622.1|2.0e-1273.53PREDICTED: protein TIFY 5A [Cucumis melo][more]
gi|767812344|gb|AJT58403.1|4.4e-0758.62JAZ13 [Gossypium barbadense][more]
gi|728845090|gb|KHG24533.1|4.4e-0758.62Protein TIFY 5A -like protein [Gossypium arboreum][more]
gi|823250296|ref|XP_012457744.1|4.4e-0758.62PREDICTED: protein TIFY 5A-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010399Tify_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:1903507 negative regulation of nucleic acid-templated transcription
biological_process GO:0031347 regulation of defense response
biological_process GO:2000022 regulation of jasmonic acid mediated signaling pathway
biological_process GO:0009611 response to wounding
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003714 transcription corepressor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g05980.1Cp4.1LG10g05980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010399Tify domainPFAMPF06200tifycoord: 43..62
score: 1.
IPR010399Tify domainPROFILEPS51320TIFYcoord: 42..79
score: 9
NoneNo IPR availablePANTHERPTHR33077FAMILY NOT NAMEDcoord: 7..66
score: 1.3
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5A-RELATEDcoord: 7..66
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g05980Cucsa.047800Cucumber (Gy14) v1cgycpeB0034
Cp4.1LG10g05980CmaCh07G000990Cucurbita maxima (Rimu)cmacpeB861
Cp4.1LG10g05980CmoCh07G001010Cucurbita moschata (Rifu)cmocpeB801
Cp4.1LG10g05980CmoCh03G014000Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g05980Cla009781Watermelon (97103) v1cpewmB074
Cp4.1LG10g05980Csa6G523460Cucumber (Chinese Long) v2cpecuB087
Cp4.1LG10g05980CSPI06G36360Wild cucumber (PI 183967)cpecpiB083
Cp4.1LG10g05980Lsi01G001380Bottle gourd (USVL1VR-Ls)cpelsiB049
Cp4.1LG10g05980CsaV3_6G051810Cucumber (Chinese Long) v3cpecucB0096
Cp4.1LG10g05980Bhi03G000085Wax gourdcpewgoB0098
Cp4.1LG10g05980CsGy6G035710Cucumber (Gy14) v2cgybcpeB713
Cp4.1LG10g05980Carg15002Silver-seed gourdcarcpeB1028
Cp4.1LG10g05980Carg19276Silver-seed gourdcarcpeB0413
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g05980Cp4.1LG19g05970Cucurbita pepo (Zucchini)cpecpeB083
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g05980Silver-seed gourdcarcpeB0592
Cp4.1LG10g05980Wax gourdcpewgoB0107
Cp4.1LG10g05980Cucurbita pepo (Zucchini)cpecpeB018
Cp4.1LG10g05980Cucurbita pepo (Zucchini)cpecpeB088
Cp4.1LG10g05980Cucurbita maxima (Rimu)cmacpeB216
Cp4.1LG10g05980Cucurbita maxima (Rimu)cmacpeB417
Cp4.1LG10g05980Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g05980Cucurbita moschata (Rifu)cmocpeB186
Cp4.1LG10g05980Cucurbita moschata (Rifu)cmocpeB379
Cp4.1LG10g05980Bottle gourd (USVL1VR-Ls)cpelsiB058
Cp4.1LG10g05980Watermelon (Charleston Gray)cpewcgB062
Cp4.1LG10g05980Watermelon (Charleston Gray)cpewcgB069
Cp4.1LG10g05980Watermelon (97103) v1cpewmB069
Cp4.1LG10g05980Melon (DHL92) v3.5.1cpemeB048
Cp4.1LG10g05980Melon (DHL92) v3.5.1cpemeB061
Cp4.1LG10g05980Melon (DHL92) v3.6.1cpemedB062
Cp4.1LG10g05980Melon (DHL92) v3.6.1cpemedB081