Cp4.1LG10g05050 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG10g05050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 1109915 .. 1110496 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATGACAACCACCACTACGATCTGCCTCCACTCTCCTCCGCCACTCTCTCCGCCGCCACCATTCTCCTCTCTCATCCTCCTCCTCCTCCTCCTCCACAAGACTCCCATCTCCCACCTATTCTCTCCCAACACTGCTTAGGCTTCTCCTCCCCCGCCCCAAAATCCTATTTTTTCACAAACCCTCCTCCTCCTCCTCCACCTCCTCCGCCTCCTCACGACCAACTCCCATCCCATTTCCCGCCTTCCTCCGCCTTCCTCTCCTACAGCTTCAACGATCTCACAACTTCTTTATTTCAAAAAGACGAAGGCAGAAGGGTTCTTGATGCTTGGAGTACCAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAACCCTTACTTTAAGTCGAACCTCTTCTTCTTCCTCCTCCACCTCCGCCGCCTCCTCTTCCGGTTTTGGCTATAATAACGATGAGTATTCAAAGGGATTAATGGCTACCCACTTCCTAAACACCGATACACATAACAACGCCAATCCAAATAATTTTACCCTCTGCACGCCAGATAACAAGGTGGGTGTCATCAAGTTTTGA

mRNA sequence

ATGGACGATGACAACCACCACTACGATCTGCCTCCACTCTCCTCCGCCACTCTCTCCGCCGCCACCATTCTCCTCTCTCATCCTCCTCCTCCTCCTCCTCCACAAGACTCCCATCTCCCACCTATTCTCTCCCAACACTGCTTAGGCTTCTCCTCCCCCGCCCCAAAATCCTATTTTTTCACAAACCCTCCTCCTCCTCCTCCACCTCCTCCGCCTCCTCACGACCAACTCCCATCCCATTTCCCGCCTTCCTCCGCCTTCCTCTCCTACAGCTTCAACGATCTCACAACTTCTTTATTTCAAAAAGACGAAGGCAGAAGGGTTCTTGATGCTTGGAGTACCAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAACCCTTACTTTAAGTCGAACCTCTTCTTCTTCCTCCTCCACCTCCGCCGCCTCCTCTTCCGGTTTTGGCTATAATAACGATGAGTATTCAAAGGGATTAATGGCTACCCACTTCCTAAACACCGATACACATAACAACGCCAATCCAAATAATTTTACCCTCTGCACGCCAGATAACAAGGTGGGTGTCATCAAGTTTTGA

Coding sequence (CDS)

ATGGACGATGACAACCACCACTACGATCTGCCTCCACTCTCCTCCGCCACTCTCTCCGCCGCCACCATTCTCCTCTCTCATCCTCCTCCTCCTCCTCCTCCACAAGACTCCCATCTCCCACCTATTCTCTCCCAACACTGCTTAGGCTTCTCCTCCCCCGCCCCAAAATCCTATTTTTTCACAAACCCTCCTCCTCCTCCTCCACCTCCTCCGCCTCCTCACGACCAACTCCCATCCCATTTCCCGCCTTCCTCCGCCTTCCTCTCCTACAGCTTCAACGATCTCACAACTTCTTTATTTCAAAAAGACGAAGGCAGAAGGGTTCTTGATGCTTGGAGTACCAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAACCCTTACTTTAAGTCGAACCTCTTCTTCTTCCTCCTCCACCTCCGCCGCCTCCTCTTCCGGTTTTGGCTATAATAACGATGAGTATTCAAAGGGATTAATGGCTACCCACTTCCTAAACACCGATACACATAACAACGCCAATCCAAATAATTTTACCCTCTGCACGCCAGATAACAAGGTGGGTGTCATCAAGTTTTGA

Protein sequence

MDDDNHHYDLPPLSSATLSAATILLSHPPPPPPPQDSHLPPILSQHCLGFSSPAPKSYFFTNPPPPPPPPPPPHDQLPSHFPPSSAFLSYSFNDLTTSLFQKDEGRRVLDAWSTKVARSKRRLARQRTLTLSRTSSSSSSTSAASSSGFGYNNDEYSKGLMATHFLNTDTHNNANPNNFTLCTPDNKVGVIKF
BLAST of Cp4.1LG10g05050 vs. TrEMBL
Match: A0A0A0KND0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517930 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26
Identity = 90/186 (48.39%), Postives = 116/186 (62.37%), Query Frame = 1

Query: 5   NHHYDLPPLSSATLSAATILLSHPPPPPPPQDSHLPPILSQHCLG-FSSPAPKSYFFTNP 64
           +HH++LPP  S  ++A T  L  PP  P     +LPP LSQ CL  FSS AP+S+F ++ 
Sbjct: 13  HHHHELPPFPSTAVTAPTTNLHSPPQNP----CYLPPTLSQTCLASFSSSAPQSFFSSSH 72

Query: 65  PPPPPPPPPPHDQLPSHFPPSSAFLSYSFNDLTT-SLFQKDEGRRVLDAWSTKVARSKRR 124
            P P  P          FP S   LSY  ++    S+F KD+G++ LDAWSTKVAR+ RR
Sbjct: 73  EPQPLAP---------RFPHSPTLLSYGLDEPNIQSVFPKDDGKKALDAWSTKVARTNRR 132

Query: 125 LARQRTLTLSRTSSSSSSTSAASSSGFGYNNDEYSKGLMATHFLNTDTHNNANPNNFTLC 184
           LARQRTLT       S +T ++SSS  GY +D+YSKGL  THF NTD+ +N N + FT C
Sbjct: 133 LARQRTLT-------SFTTRSSSSSSCGY-HDDYSKGLTITHFPNTDSSHN-NRHLFTFC 176

Query: 185 TPDNKV 189
           TPDNK+
Sbjct: 193 TPDNKI 176

BLAST of Cp4.1LG10g05050 vs. NCBI nr
Match: gi|659080978|ref|XP_008441082.1| (PREDICTED: putative B3 domain-containing protein Os04g0676650 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 7.4e-34
Identity = 100/188 (53.19%), Postives = 124/188 (65.96%), Query Frame = 1

Query: 5   NHHYDLPPLSSATLSAATILLSHPPPPPPPQDSHLPPILSQHCLG-FSSPAPKSYFFTNP 64
           +HH++LPPL +A ++  TIL S     PP    +LPPILSQ CLG FSS AP+S+F ++ 
Sbjct: 13  HHHHELPPLPTAAVTTPTILHS-----PPQNSCYLPPILSQTCLGSFSSSAPQSFFSSHE 72

Query: 65  PPPPPPPPPPHDQL--PSHFPPSSAFLSYSFNDLTT-SLFQKDEGRRVLDAWSTKVARSK 124
           P           QL  P HFP S  FLSY F+D    S+F KD+G++ LDAWSTKVAR+ 
Sbjct: 73  P-----------QLLTPGHFPHSPTFLSYGFDDPNIHSVFPKDDGKKALDAWSTKVARTN 132

Query: 125 RRLARQRTLTLSRTSSSSSSTSAASSSGFGYNNDEYSKGLMATHFLNTDTHNNANPNNFT 184
           RRLARQRT+T      SS +T  +SSS  GY ND+YSKGL  THF NTD+ +N N N FT
Sbjct: 133 RRLARQRTIT------SSFTTRTSSSSSCGY-NDDYSKGLTVTHFPNTDSSHN-NRNLFT 176

Query: 185 LCTPDNKV 189
            CTPDNK+
Sbjct: 193 FCTPDNKI 176

BLAST of Cp4.1LG10g05050 vs. NCBI nr
Match: gi|700194032|gb|KGN49236.1| (hypothetical protein Csa_6G517930 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 90/186 (48.39%), Postives = 116/186 (62.37%), Query Frame = 1

Query: 5   NHHYDLPPLSSATLSAATILLSHPPPPPPPQDSHLPPILSQHCLG-FSSPAPKSYFFTNP 64
           +HH++LPP  S  ++A T  L  PP  P     +LPP LSQ CL  FSS AP+S+F ++ 
Sbjct: 13  HHHHELPPFPSTAVTAPTTNLHSPPQNP----CYLPPTLSQTCLASFSSSAPQSFFSSSH 72

Query: 65  PPPPPPPPPPHDQLPSHFPPSSAFLSYSFNDLTT-SLFQKDEGRRVLDAWSTKVARSKRR 124
            P P  P          FP S   LSY  ++    S+F KD+G++ LDAWSTKVAR+ RR
Sbjct: 73  EPQPLAP---------RFPHSPTLLSYGLDEPNIQSVFPKDDGKKALDAWSTKVARTNRR 132

Query: 125 LARQRTLTLSRTSSSSSSTSAASSSGFGYNNDEYSKGLMATHFLNTDTHNNANPNNFTLC 184
           LARQRTLT       S +T ++SSS  GY +D+YSKGL  THF NTD+ +N N + FT C
Sbjct: 133 LARQRTLT-------SFTTRSSSSSSCGY-HDDYSKGLTITHFPNTDSSHN-NRHLFTFC 176

Query: 185 TPDNKV 189
           TPDNK+
Sbjct: 193 TPDNKI 176

BLAST of Cp4.1LG10g05050 vs. NCBI nr
Match: gi|778722568|ref|XP_011658520.1| (PREDICTED: B3 domain-containing transcription factor LEC2 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 90/186 (48.39%), Postives = 116/186 (62.37%), Query Frame = 1

Query: 5   NHHYDLPPLSSATLSAATILLSHPPPPPPPQDSHLPPILSQHCLG-FSSPAPKSYFFTNP 64
           +HH++LPP  S  ++A T  L  PP  P     +LPP LSQ CL  FSS AP+S+F ++ 
Sbjct: 13  HHHHELPPFPSTAVTAPTTNLHSPPQNP----CYLPPTLSQTCLASFSSSAPQSFFSSSH 72

Query: 65  PPPPPPPPPPHDQLPSHFPPSSAFLSYSFNDLTT-SLFQKDEGRRVLDAWSTKVARSKRR 124
            P P  P          FP S   LSY  ++    S+F KD+G++ LDAWSTKVAR+ RR
Sbjct: 73  EPQPLAP---------RFPHSPTLLSYGLDEPNIQSVFPKDDGKKALDAWSTKVARTNRR 132

Query: 125 LARQRTLTLSRTSSSSSSTSAASSSGFGYNNDEYSKGLMATHFLNTDTHNNANPNNFTLC 184
           LARQRTLT       S +T ++SSS  GY +D+YSKGL  THF NTD+ +N N + FT C
Sbjct: 133 LARQRTLT-------SFTTRSSSSSSCGY-HDDYSKGLTITHFPNTDSSHN-NRHLFTFC 176

Query: 185 TPDNKV 189
           TPDNK+
Sbjct: 193 TPDNKI 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KND0_CUCSA3.0e-2648.39Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659080978|ref|XP_008441082.1|7.4e-3453.19PREDICTED: putative B3 domain-containing protein Os04g0676650 [Cucumis melo][more]
gi|700194032|gb|KGN49236.1|4.3e-2648.39hypothetical protein Csa_6G517930 [Cucumis sativus][more]
gi|778722568|ref|XP_011658520.1|4.3e-2648.39PREDICTED: B3 domain-containing transcription factor LEC2 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048316 seed development
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g05050.1Cp4.1LG10g05050.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 193..193
scor
NoneNo IPR availableunknownSSF101447Formin homology 2 domain (FH2 domain)coord: 63..73
score: 3.4E-6coord: 166..175
score: 3.

The following gene(s) are paralogous to this gene:

None