Cp4.1LG10g04840 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g04840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 1185644 .. 1186291 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTGTGTATATATATGTGTGGGGGTTATTTAGAGGGAAATAAATGTTCCAACCCAACATATCGACATCAGTTACCTCGCAACTTATTGCTGTAAGGATGGCGACGGTTTGAATGTCCAAAAGCTGAAAAAGAATACATGCAATAATCACAAAATAATATTCCCATTTCTCCTCTCTTCATCACTGCTTCTTGTTGTTCTCCATCTTCCGCCATGGAAATGAGCTTTAGGATCACTGTGTTCTTCCTCTTCCTTCTGCTTACCCCTTCATTATGTTGTTGTTCTTCAAATGAAGGTGTGTGTGTAATTTGTGTATGATGGGTGTTACACAAATATAATGGTTGATTTAATTTTAATTTGTAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGACTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCCCTCCCATGGAAGGCCATGGATTGTTCATCATCACCATCCTCTCCACCCTCCTCCATACCCACTCAAGGTCATTTTATTACTTATCAATCTTTTTTCTTTTTACGATTTTGTTTGTGACGATAAATATCATTCTTTCGGAGTGATGTACGAGTTAGGGTTTTGTTTATCTAGCTAGAGTAA

mRNA sequence

ATGGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGACTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCCCTCCCATGGAAGGCCATGGATTGTTCATCATCACCATCCTCTCCACCCTCCTCCATACCCACTCAAGCTAGAGTAA

Coding sequence (CDS)

ATGGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGACTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCCCTCCCATGGAAGGCCATGGATTGTTCATCATCACCATCCTCTCCACCCTCCTCCATACCCACTCAAGCTAGAGTAA

Protein sequence

MGGSENGGMGSSSEVYEIDYRGPETHSSHISPPHPSHGRPWIVHHHHPLHPPPYPLKLE
Homology
[Close]
BLAST of Cp4.1LG10g04840 vs. TrEMBL
Match: A0A0A0KIB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-07
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 4  SENGGMGSSSEVYEIDYRGPETHSS-HISPPHPSHG-RPWIVHHH-HPLHPPPYPLKLE 60
          SEN   G    VYEIDYRGPETHSS HISPP  SHG RPWI+HHH H L  P  P  L+
Sbjct: 30 SENSNGGIDDIVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLD 88

[Close]
BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match: gi|700192928|gb|KGN48132.1| (hypothetical protein Csa_6G444970 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-07
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 4  SENGGMGSSSEVYEIDYRGPETHSS-HISPPHPSHG-RPWIVHHH-HPLHPPPYPLKLE 60
          SEN   G    VYEIDYRGPETHSS HISPP  SHG RPWI+HHH H L  P  P  L+
Sbjct: 30 SENSNGGIDDIVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLD 88

[Close]
BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match: gi|659096763|ref|XP_008449275.1| (PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 1 

Query: 2   GGSENGGMGSSSE----VYEIDYRGPETHSS-HISPPHPSHG-RPWIVHHHH 48
           GG ++    SSS     VYEIDYRGPETHSS HISPP  SHG RPWI+HHHH
Sbjct: 58  GGIDDDDSSSSSRRYDSVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHH 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g04840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIB6_CUCSA2.8e-0764.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1[more]
BLAST of Cp4.1LG10g04840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g04840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192928|gb|KGN48132.1|4.0e-0764.41hypothetical protein Csa_6G444970 [Cucumis sativus][more]
gi|659096763|ref|XP_008449275.1|1.2e-0667.31PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04840.1Cp4.1LG10g04840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g04840CsaV3_6G039370Cucumber (Chinese Long) v3cpecucB0093
Cp4.1LG10g04840Carg15282Silver-seed gourdcarcpeB0772
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g04840Cucumber (Chinese Long) v3cpecucB0070
Cp4.1LG10g04840Wax gourdcpewgoB0067
Cp4.1LG10g04840Wax gourdcpewgoB0091
Cp4.1LG10g04840Cucurbita pepo (Zucchini)cpecpeB075
Cp4.1LG10g04840Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g04840Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG10g04840Cucurbita pepo (Zucchini)cpecpeB107
Cp4.1LG10g04840Cucumber (Gy14) v1cgycpeB0314
Cp4.1LG10g04840Cucumber (Gy14) v1cgycpeB0798
Cp4.1LG10g04840Cucurbita maxima (Rimu)cmacpeB254
Cp4.1LG10g04840Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g04840Cucurbita maxima (Rimu)cmacpeB808
Cp4.1LG10g04840Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g04840Cucurbita moschata (Rifu)cmocpeB218
Cp4.1LG10g04840Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g04840Cucurbita moschata (Rifu)cmocpeB762
Cp4.1LG10g04840Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g04840Wild cucumber (PI 183967)cpecpiB060
Cp4.1LG10g04840Wild cucumber (PI 183967)cpecpiB081
Cp4.1LG10g04840Cucumber (Chinese Long) v2cpecuB064
Cp4.1LG10g04840Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g04840Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g04840Bottle gourd (USVL1VR-Ls)cpelsiB063
Cp4.1LG10g04840Watermelon (Charleston Gray)cpewcgB058
Cp4.1LG10g04840Watermelon (Charleston Gray)cpewcgB071
Cp4.1LG10g04840Watermelon (97103) v1cpewmB065
Cp4.1LG10g04840Watermelon (97103) v1cpewmB078
Cp4.1LG10g04840Melon (DHL92) v3.5.1cpemeB055
Cp4.1LG10g04840Melon (DHL92) v3.5.1cpemeB057
Cp4.1LG10g04840Cucumber (Gy14) v2cgybcpeB291
Cp4.1LG10g04840Melon (DHL92) v3.6.1cpemedB072
Cp4.1LG10g04840Melon (DHL92) v3.6.1cpemedB075
Cp4.1LG10g04840Silver-seed gourdcarcpeB0221
Cp4.1LG10g04840Silver-seed gourdcarcpeB0348
Cp4.1LG10g04840Silver-seed gourdcarcpeB0587
Cp4.1LG10g04840Silver-seed gourdcarcpeB0959