Cp4.1LG10g04530 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g04530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionThylakoid lumenal 15.0 kDa protein 2, chloroplastic
LocationCp4.1LG10 : 1370654 .. 1372390 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACATGCAAATTAAATGACATACCCCTATCCGCTATCCAGAACCGTCTCTGTTTCTAGAACACTAGGTCCATCCAAAATCCATGGCGCAAACACACCAACGAGGAGCTAGAAAAATTCATTAATGGCGTTTATGCATCTTCATCATCGCCTTCCATCTCCTTCGCTATCATTTCCGGGAGCTTCACCGCCGGTTTACAGATCATCAATCTTCGCATCATCTCGCTTCTCTCCGCCATCAGTTTCATTTCCGTCCCATAACTTAACTGGTTTCACCAACTGCCTTCTTCATCTCCCACCAAAATCTCTGAGTTTCGCGCTCTCTTGGACTCTTGCGCTCGGAGTAGCTCTCTCTGGTAATCATTCTTGCAAATTATCATCGGTTAGATGAAGAAAGAAAAAAGGAATGTTAAGTTCTGTCTGAATTGTTTCGAGATGGAATGTTTAGGTTATATAATTGGTTTTAGATACTCGTTTGTTTTATTGAAGTGATTGGCTCTACTCTATCATAGAAACTTAAGAATTTTATGAAGTGCTAACAGTAATAAGTGAGTGTACCTTGTAGGAGTTGGATTTGCTGACGCCAAAGTTGGGGTTAACAAGCCAGAATTACTTCCCAAGGAGTTCACCTCTGTCATTGATGTCGCTGGGTTTCTATCTGATGGCCAGGTGTGGTTGCTTCGCCTCATTCCTTTTCTTTTTCTTTTTTTTCCTTTTGTTGCGTTCTTTGATGTAATTTAGGGTATTTGATCATGATCAACTGGCCATTGCTGGTTCTGATTTTCTATGAACAGGAATTAAGGCTCAAACAAGAAATTGCTGACATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCCCAAAATTATCCTGTGACGCCTGGTATGTTCTATGTTTTATCTTCAGCAGATCATTGCATTAATCTCACTTTTAATGGCGAGGACTTTATTATTAAAATTTCAACGTACATTCACTGAATCTTACTAGAACATTGTATATGTGATTTATTGACACTTCATAACTTTGAAAGTTTCTCTCATACGCATGTCAAGTTTATCAAGTTAGATAGATGATCTCTAATCTAATCGGCAGAAACAATCAATTTAATGGTCTTTACAGGGCTAGCGATCAAAGATTTTTGGCAAGTGGATGATAAAACAATCGTGTTTGTTGCTGATCCTACATTTGGTATGAACAATGTCACGATACTTTTCTACACCTATGTCTATGATACTATTGACATTGACATTGATTGATATCGTCATTCAGGTAACATATTGAACTTCAACGTTGGAGCGTCTGTCGATTTAGATATTCCAAGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTACGGAAACATATTTTATTGGAAAGAGAAGGTAACATCTCCAATCGATACTTCTGTACAACAGTTACCGTTGTGAGTTTTTGCTTGGTTAGTAAAATATGGTCATAATGAGAGCATCTGGTTGAGGATTGTTGGGAGATGAGTCTCACATCGGCTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAATGCATCTCTATTGGTATGAGGTCTTTTGGGAAACCAAAAGCAAAACGATGAGAGCTTATGCTCAAAGTGGACAATACCATACCATTGTGGAGATTCTTGATTCCTAATACATCTCATATTGTCGCTTTGGTGACTTAAACAGGGTGAAGAGGCATCTATTGAAGCAGCTGTCATGGCGATATCTAATTGCTTGA

mRNA sequence

CAAACATGCAAATTAAATGACATACCCCTATCCGCTATCCAGAACCGTCTCTGTTTCTAGAACACTAGGTCCATCCAAAATCCATGGCGCAAACACACCAACGAGGAGCTAGAAAAATTCATTAATGGCGTTTATGCATCTTCATCATCGCCTTCCATCTCCTTCGCTATCATTTCCGGGAGCTTCACCGCCGGTTTACAGATCATCAATCTTCGCATCATCTCGCTTCTCTCCGCCATCAGTTTCATTTCCGTCCCATAACTTAACTGGTTTCACCAACTGCCTTCTTCATCTCCCACCAAAATCTCTGAGTTTCGCGCTCTCTTGGACTCTTGCGCTCGGAGTAGCTCTCTCTGGAGTTGGATTTGCTGACGCCAAAGTTGGGGTTAACAAGCCAGAATTACTTCCCAAGGAGTTCACCTCTGTCATTGATGTCGCTGGGTTTCTATCTGATGGCCAGGAATTAAGGCTCAAACAAGAAATTGCTGACATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCCCAAAATTATCCTGTGACGCCTGGGCTAGCGATCAAAGATTTTTGGCAAGTGGATGATAAAACAATCGTGTTTGTTGCTGATCCTACATTTGGTAACATATTGAACTTCAACGTTGGAGCGTCTGTCGATTTAGATATTCCAAGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTACGGAAACATATTTTATTGGAAAGAGAAGCTGTCATGGCGATATCTAATTGCTTGA

Coding sequence (CDS)

ATGGCGTTTATGCATCTTCATCATCGCCTTCCATCTCCTTCGCTATCATTTCCGGGAGCTTCACCGCCGGTTTACAGATCATCAATCTTCGCATCATCTCGCTTCTCTCCGCCATCAGTTTCATTTCCGTCCCATAACTTAACTGGTTTCACCAACTGCCTTCTTCATCTCCCACCAAAATCTCTGAGTTTCGCGCTCTCTTGGACTCTTGCGCTCGGAGTAGCTCTCTCTGGAGTTGGATTTGCTGACGCCAAAGTTGGGGTTAACAAGCCAGAATTACTTCCCAAGGAGTTCACCTCTGTCATTGATGTCGCTGGGTTTCTATCTGATGGCCAGGAATTAAGGCTCAAACAAGAAATTGCTGACATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCCCAAAATTATCCTGTGACGCCTGGGCTAGCGATCAAAGATTTTTGGCAAGTGGATGATAAAACAATCGTGTTTGTTGCTGATCCTACATTTGGTAACATATTGAACTTCAACGTTGGAGCGTCTGTCGATTTAGATATTCCAAGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTACGGAAACATATTTTATTGGAAAGAGAAGCTGTCATGGCGATATCTAATTGCTTGA

Protein sequence

MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPPKSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEIADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKLSWRYLIA
Homology
[Close]
BLAST of Cp4.1LG10g04530 vs. Swiss-Prot
Match: TL15B_ARATH (Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-68
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 60  KSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQE 119
           KSLS   S  LALG++LSGVGFADAKVGVNKPELLPKEFTSVIDVA FLS+GQE R+ QE
Sbjct: 51  KSLSLVFSGALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQE 110

Query: 120 IADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDL 179
           IA++EKDTG+KLRVLAQNYPVTPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDL
Sbjct: 111 IANLEKDTGFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDL 170

Query: 180 DIPRSFWSRLAGKYGNIFYWKEK 203
           DIPRSFWSRLAGKYGN+FYWKEK
Sbjct: 171 DIPRSFWSRLAGKYGNMFYWKEK 193

[Close]
BLAST of Cp4.1LG10g04530 vs. TrEMBL
Match: A0A0A0KH91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446440 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 7.7e-92
Identity = 173/202 (85.64%), Postives = 180/202 (89.11%), Query Frame = 1 

Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPPK 60
           MAFMHLHH LPSPSLSF   SPP+ RSS    SRFSPPS   PS   T F++ LLHLP K
Sbjct: 1   MAFMHLHHHLPSPSLSFSRPSPPLCRSS----SRFSPPSSPLPSQKYTDFSHRLLHLPQK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEI 120
           SLSF LS  LALG+ LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RLKQEI
Sbjct: 61  SLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDD+TIVFVADPTFGNILNFNVGA+VDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEK 203
           IPRSFWSRLAGKYGNIFYWKEK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEK 198

[Close]
BLAST of Cp4.1LG10g04530 vs. TrEMBL
Match: B9S0H8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355040 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.7e-70
Identity = 144/203 (70.94%), Postives = 161/203 (79.31%), Query Frame = 1 

Query: 1   MAFMHLHHRLPSPSLSFPGAS-PPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPP 60
           MAF+HL     S SL+  G S  P ++  + ASS        FP  N T F+N ++    
Sbjct: 1   MAFLHL-----SSSLTLRGTSLRPAFKIPVTASSPI------FPIQNSTKFSNWVVDFRS 60

Query: 61  KSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQE 120
           K+L F LS  L LG++LSGV FA+AKVGVNKPELLPKEFT+VIDVAGFLSDGQE RL QE
Sbjct: 61  KTLKFLLSGALTLGLSLSGVEFAEAKVGVNKPELLPKEFTTVIDVAGFLSDGQEKRLAQE 120

Query: 121 IADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDL 180
           I DIEKDTG+KLRVLAQNYP TPGLAIKDFW+VDD+TIVFVADPTFGNILNFNVGAS+DL
Sbjct: 121 IQDIEKDTGFKLRVLAQNYPDTPGLAIKDFWRVDDRTIVFVADPTFGNILNFNVGASIDL 180

Query: 181 DIPRSFWSRLAGKYGNIFYWKEK 203
           DIPRSFWSRLAGKYGNIFYWKEK
Sbjct: 181 DIPRSFWSRLAGKYGNIFYWKEK 192

[Close]
BLAST of Cp4.1LG10g04530 vs. TrEMBL
Match: V4SWU2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012670mg PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.3e-70
Identity = 142/201 (70.65%), Postives = 160/201 (79.60%), Query Frame = 1 

Query: 4   MHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHN-LTGFTNCLLHLPPKSL 63
           M    +L   SL     SP V+ S I    RF   S+   ++N  T F N + +   KSL
Sbjct: 1   MAFAQQLARSSLPLTTTSPSVFTSPI----RFRASSLPISANNKTTKFRNWVTNFNSKSL 60

Query: 64  SFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEIAD 123
           SF LS  L+LG++L+GVG ++AKVGVNKPELLP+EFTSVIDVAGFLSDGQE RL QEIAD
Sbjct: 61  SFFLSGALSLGISLTGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIAD 120

Query: 124 IEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIP 183
           +EKDTG+KLRVLAQNYP TPGLAIKDFWQVDD+TIVFVADPTFGNILNFNVGASVDLDIP
Sbjct: 121 LEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIP 180

Query: 184 RSFWSRLAGKYGNIFYWKEKL 204
           RSFWSRLAGKYGNIFYWKEK+
Sbjct: 181 RSFWSRLAGKYGNIFYWKEKV 197

[Close]
BLAST of Cp4.1LG10g04530 vs. TrEMBL
Match: V4SRU9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012670mg PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 142/200 (71.00%), Postives = 159/200 (79.50%), Query Frame = 1 

Query: 4   MHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHN-LTGFTNCLLHLPPKSL 63
           M    +L   SL     SP V+ S I    RF   S+   ++N  T F N + +   KSL
Sbjct: 1   MAFAQQLARSSLPLTTTSPSVFTSPI----RFRASSLPISANNKTTKFRNWVTNFNSKSL 60

Query: 64  SFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEIAD 123
           SF LS  L+LG++L+GVG ++AKVGVNKPELLP+EFTSVIDVAGFLSDGQE RL QEIAD
Sbjct: 61  SFFLSGALSLGISLTGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIAD 120

Query: 124 IEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIP 183
           +EKDTG+KLRVLAQNYP TPGLAIKDFWQVDD+TIVFVADPTFGNILNFNVGASVDLDIP
Sbjct: 121 LEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIP 180

Query: 184 RSFWSRLAGKYGNIFYWKEK 203
           RSFWSRLAGKYGNIFYWKEK
Sbjct: 181 RSFWSRLAGKYGNIFYWKEK 196

[Close]
BLAST of Cp4.1LG10g04530 vs. TrEMBL
Match: A0A061ETB4_THECC (Thylakoid lumenal 15.0 kDa protein 2 isoform 2 OS=Theobroma cacao GN=TCM_022214 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.0e-68
Identity = 141/193 (73.06%), Postives = 154/193 (79.79%), Query Frame = 1 

Query: 10  LPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPPKSLSFALSWT 69
           L  PS SF   S P Y   I ASSR S P    PS N +   N +     KSL++  S  
Sbjct: 4   LQYPSPSFRITSIPTYSVPIRASSRLSLPVT--PSLNSSTPRNWVPDFRAKSLNWIFSGA 63

Query: 70  LALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEIADIEKDTGY 129
           LAL ++L G+GFA+AKVGVNKPELLPKEFTSVIDVAGFLSDGQE RL +EI +IEKDTG+
Sbjct: 64  LALSLSLPGIGFAEAKVGVNKPELLPKEFTSVIDVAGFLSDGQEKRLAEEIGNIEKDTGF 123

Query: 130 KLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRL 189
           KLRVLAQNYP TPGLAIKDFWQVDD+TIVFVADPTFGNILNFNVGASVDLDIPRSFWSRL
Sbjct: 124 KLRVLAQNYPDTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRL 183

Query: 190 AGKYGNIFYWKEK 203
           AGKYGN+FYWKEK
Sbjct: 184 AGKYGNMFYWKEK 194

[Close]
BLAST of Cp4.1LG10g04530 vs. TAIR10
Match: AT5G52970.1 (AT5G52970.1 thylakoid lumen 15.0 kDa protein)

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-69
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 60  KSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQE 119
           KSLS   S  LALG++LSGVGFADAKVGVNKPELLPKEFTSVIDVA FLS+GQE R+ QE
Sbjct: 51  KSLSLVFSGALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQE 110

Query: 120 IADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDL 179
           IA++EKDTG+KLRVLAQNYPVTPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDL
Sbjct: 111 IANLEKDTGFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDL 170

Query: 180 DIPRSFWSRLAGKYGNIFYWKEK 203
           DIPRSFWSRLAGKYGN+FYWKEK
Sbjct: 171 DIPRSFWSRLAGKYGNMFYWKEK 193

[Close]
BLAST of Cp4.1LG10g04530 vs. NCBI nr
Match: gi|449451038|ref|XP_004143269.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 1.1e-91
Identity = 173/202 (85.64%), Postives = 180/202 (89.11%), Query Frame = 1 

Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPPK 60
           MAFMHLHH LPSPSLSF   SPP+ RSS    SRFSPPS   PS   T F++ LLHLP K
Sbjct: 1   MAFMHLHHHLPSPSLSFSRPSPPLCRSS----SRFSPPSSPLPSQKYTDFSHRLLHLPQK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEI 120
           SLSF LS  LALG+ LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RLKQEI
Sbjct: 61  SLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDD+TIVFVADPTFGNILNFNVGA+VDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEK 203
           IPRSFWSRLAGKYGNIFYWKEK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEK 198

[Close]
BLAST of Cp4.1LG10g04530 vs. NCBI nr
Match: gi|659125024|ref|XP_008462470.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 7.9e-90
Identity = 170/202 (84.16%), Postives = 178/202 (88.12%), Query Frame = 1 

Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPPK 60
           MAFMHLHH LPSPSLSF  +S P+ RSS    SRFSPPS  FPS   T F + LLHLP K
Sbjct: 1   MAFMHLHHHLPSPSLSFSRSSLPLCRSS----SRFSPPSSPFPSKKYTDFGDRLLHLPQK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEI 120
            LSF LS  LALG+ LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RLKQEI
Sbjct: 61  PLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQNYP TPGLA+KDFWQVDD+TIVFVADPTFGNILNFNVGA+VDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNYPATPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEK 203
           IPRSFWSRLAGKYGNIFYWKEK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEK 198

[Close]
BLAST of Cp4.1LG10g04530 vs. NCBI nr
Match: gi|223541360|gb|EEF42911.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 273.9 bits (699), Expect = 2.4e-70
Identity = 144/203 (70.94%), Postives = 161/203 (79.31%), Query Frame = 1 

Query: 1   MAFMHLHHRLPSPSLSFPGAS-PPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPP 60
           MAF+HL     S SL+  G S  P ++  + ASS        FP  N T F+N ++    
Sbjct: 1   MAFLHL-----SSSLTLRGTSLRPAFKIPVTASSPI------FPIQNSTKFSNWVVDFRS 60

Query: 61  KSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQE 120
           K+L F LS  L LG++LSGV FA+AKVGVNKPELLPKEFT+VIDVAGFLSDGQE RL QE
Sbjct: 61  KTLKFLLSGALTLGLSLSGVEFAEAKVGVNKPELLPKEFTTVIDVAGFLSDGQEKRLAQE 120

Query: 121 IADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDL 180
           I DIEKDTG+KLRVLAQNYP TPGLAIKDFW+VDD+TIVFVADPTFGNILNFNVGAS+DL
Sbjct: 121 IQDIEKDTGFKLRVLAQNYPDTPGLAIKDFWRVDDRTIVFVADPTFGNILNFNVGASIDL 180

Query: 181 DIPRSFWSRLAGKYGNIFYWKEK 203
           DIPRSFWSRLAGKYGNIFYWKEK
Sbjct: 181 DIPRSFWSRLAGKYGNIFYWKEK 192

[Close]
BLAST of Cp4.1LG10g04530 vs. NCBI nr
Match: gi|1000965807|ref|XP_015574837.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Ricinus communis])

HSP 1 Score: 273.9 bits (699), Expect = 2.4e-70
Identity = 144/203 (70.94%), Postives = 161/203 (79.31%), Query Frame = 1 

Query: 1   MAFMHLHHRLPSPSLSFPGAS-PPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPP 60
           MAF+HL     S SL+  G S  P ++  + ASS        FP  N T F+N ++    
Sbjct: 1   MAFLHL-----SSSLTLRGTSLRPAFKIPVTASSPI------FPIQNSTKFSNWVVDFRS 60

Query: 61  KSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQE 120
           K+L F LS  L LG++LSGV FA+AKVGVNKPELLPKEFT+VIDVAGFLSDGQE RL QE
Sbjct: 61  KTLKFLLSGALTLGLSLSGVEFAEAKVGVNKPELLPKEFTTVIDVAGFLSDGQEKRLAQE 120

Query: 121 IADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDL 180
           I DIEKDTG+KLRVLAQNYP TPGLAIKDFW+VDD+TIVFVADPTFGNILNFNVGAS+DL
Sbjct: 121 IQDIEKDTGFKLRVLAQNYPDTPGLAIKDFWRVDDRTIVFVADPTFGNILNFNVGASIDL 180

Query: 181 DIPRSFWSRLAGKYGNIFYWKEK 203
           DIPRSFWSRLAGKYGNIFYWKEK
Sbjct: 181 DIPRSFWSRLAGKYGNIFYWKEK 192

[Close]
BLAST of Cp4.1LG10g04530 vs. NCBI nr
Match: gi|567871603|ref|XP_006428391.1| (hypothetical protein CICLE_v10012670mg [Citrus clementina])

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 142/201 (70.65%), Postives = 160/201 (79.60%), Query Frame = 1 

Query: 4   MHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHN-LTGFTNCLLHLPPKSL 63
           M    +L   SL     SP V+ S I    RF   S+   ++N  T F N + +   KSL
Sbjct: 1   MAFAQQLARSSLPLTTTSPSVFTSPI----RFRASSLPISANNKTTKFRNWVTNFNSKSL 60

Query: 64  SFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEIAD 123
           SF LS  L+LG++L+GVG ++AKVGVNKPELLP+EFTSVIDVAGFLSDGQE RL QEIAD
Sbjct: 61  SFFLSGALSLGISLTGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIAD 120

Query: 124 IEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIP 183
           +EKDTG+KLRVLAQNYP TPGLAIKDFWQVDD+TIVFVADPTFGNILNFNVGASVDLDIP
Sbjct: 121 LEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIP 180

Query: 184 RSFWSRLAGKYGNIFYWKEKL 204
           RSFWSRLAGKYGNIFYWKEK+
Sbjct: 181 RSFWSRLAGKYGNIFYWKEKV 197

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TL15B_ARATH2.2e-6887.41Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=A... [more]
BLAST of Cp4.1LG10g04530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH91_CUCSA7.7e-9285.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446440 PE=4 SV=1[more]
B9S0H8_RICCO1.7e-7070.94Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355040 PE=4 SV=1[more]
V4SWU2_9ROSI8.3e-7070.65Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012670mg PE=4 SV=1[more]
V4SRU9_9ROSI1.1e-6971.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012670mg PE=4 SV=1[more]
A0A061ETB4_THECC2.0e-6873.06Thylakoid lumenal 15.0 kDa protein 2 isoform 2 OS=Theobroma cacao GN=TCM_022214 ... [more]
BLAST of Cp4.1LG10g04530 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52970.11.3e-6987.41 thylakoid lumen 15.0 kDa protein[more]
BLAST of Cp4.1LG10g04530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451038|ref|XP_004143269.1|1.1e-9185.64PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucumis sativus][more]
gi|659125024|ref|XP_008462470.1|7.9e-9084.16PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucumis melo][more]
gi|223541360|gb|EEF42911.1|2.4e-7070.94conserved hypothetical protein [Ricinus communis][more]
gi|1000965807|ref|XP_015574837.1|2.4e-7070.94PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Ricinus communis... [more]
gi|567871603|ref|XP_006428391.1|1.2e-6970.65hypothetical protein CICLE_v10012670mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0048481 plant ovule development
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0008150 biological_process
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009507 chloroplast
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04530.1Cp4.1LG10g04530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35514FAMILY NOT NAMEDcoord: 60..202
score: 8.8
NoneNo IPR availablePANTHERPTHR35514:SF1THYLAKOID LUMENAL 15.0 KDA PROTEIN 2, CHLOROPLASTICcoord: 60..202
score: 8.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g04530Cucsa.124650Cucumber (Gy14) v1cgycpeB0314
Cp4.1LG10g04530CmaCh07G009000Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g04530CmoCh07G009310Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g04530CmoCh03G012110Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g04530Cla018316Watermelon (97103) v1cpewmB078
Cp4.1LG10g04530Csa6G446440Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g04530MELO3C024463Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g04530ClCG04G009280Watermelon (Charleston Gray)cpewcgB071
Cp4.1LG10g04530CSPI06G24660Wild cucumber (PI 183967)cpecpiB081
Cp4.1LG10g04530Lsi01G013110Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g04530MELO3C024463.2Melon (DHL92) v3.6.1cpemedB090
Cp4.1LG10g04530CsaV3_6G039870Cucumber (Chinese Long) v3cpecucB0093
Cp4.1LG10g04530CsGy6G024070Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g04530Carg10427Silver-seed gourdcarcpeB0337
Cp4.1LG10g04530Carg25552Silver-seed gourdcarcpeB0930
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g04530Cp4.1LG19g03970Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g04530Silver-seed gourdcarcpeB0221
Cp4.1LG10g04530Silver-seed gourdcarcpeB0348
Cp4.1LG10g04530Silver-seed gourdcarcpeB0959
Cp4.1LG10g04530Cucumber (Chinese Long) v3cpecucB0070
Cp4.1LG10g04530Cucumber (Chinese Long) v3cpecucB0095
Cp4.1LG10g04530Wax gourdcpewgoB0067
Cp4.1LG10g04530Wax gourdcpewgoB0100
Cp4.1LG10g04530Cucurbita pepo (Zucchini)cpecpeB075
Cp4.1LG10g04530Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG10g04530Cucurbita pepo (Zucchini)cpecpeB107
Cp4.1LG10g04530Cucumber (Gy14) v1cgycpeB0798
Cp4.1LG10g04530Cucurbita maxima (Rimu)cmacpeB254
Cp4.1LG10g04530Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g04530Cucurbita moschata (Rifu)cmocpeB218
Cp4.1LG10g04530Wild cucumber (PI 183967)cpecpiB060
Cp4.1LG10g04530Cucumber (Chinese Long) v2cpecuB064
Cp4.1LG10g04530Bottle gourd (USVL1VR-Ls)cpelsiB063
Cp4.1LG10g04530Watermelon (Charleston Gray)cpewcgB058
Cp4.1LG10g04530Watermelon (97103) v1cpewmB065
Cp4.1LG10g04530Melon (DHL92) v3.5.1cpemeB055
Cp4.1LG10g04530Cucumber (Gy14) v2cgybcpeB291
Cp4.1LG10g04530Cucumber (Gy14) v2cgybcpeB712
Cp4.1LG10g04530Melon (DHL92) v3.6.1cpemedB057
Cp4.1LG10g04530Melon (DHL92) v3.6.1cpemedB069
Cp4.1LG10g04530Melon (DHL92) v3.6.1cpemedB072