Cp4.1LG10g04300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g04300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHomeobox leucine zipper protein
LocationCp4.1LG10 : 1547782 .. 1549261 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGAATAGTGGCAGTCTCATTCCTACCTTTGTTTCTCCACCGTCGCCCTACAACTATTACTACAATTACAATTTGGATCAGTTTCCTGGTAAGTTCTAAAGTTGTTCATACATACATTGTATGGAAAATTTAATGTTGACATAATTTTGGTTTAATCAGTGTTAGAGACGAAGAAGCAGGCGGTGGAATGTGTGGTTGGAGGAGTGGATGAGGAGAAGAGGAAGAAGAAGAACAGGTTGAGTGAGGATCAGTTGGAGAGGTTAGAGAGATGCTTTCAAGAGGAAGGGAAGCTTGAGCCTGATACCAAAATGCAGCTATCAAAGGAACTTGGGCTCCAACCAAGGCAAATTGCTGTTTGGTTTCAAAATAGAAGAGCTCGTTGGAGGACTAAGCAGCTTGAGTATCTCTATGATACCCTCAAACAAGAATTTGACACCATTTCTAAGGAAAAACACACCCTTCAACAAGAGGTTTCTATCTCTTTCTCATCATCTTTAATGTTCTTCATGCACACATCTCTCTACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTTTCACTTTCAACATTGCTTACAAATTTTAGGTTATACTTTCATTTTTTTTAGTGTTTTAAGTCGTTTGGAGGAGTGATTACGTTCGACTCCGAAAAAGAGTTAGAAATGACTTAATCACTAAACTGTGTTTAGGCTAACATGGTTGAGTTAGGGTTGTTGAGAATTGTTGGTAGGGAGTCTACGTTAGCTAATTAAGCAATGGTCTCCAAAAGCAAAGCCACGAGATCGAGTTTGTGCTCAAAGTGGACAATATCATACCATTGTGGAGAATCGTGGTTTCTAACATGGTATCAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATCCTCACATGTCGAACAAAGAAGTTGGGGCTCTCGAAAGTGTAATCAAAAGTGACTCAAGTGTCGAACAAAAGGTGTATTTTGTTCAAGGGCTCTAAAGAAAAGAGTTGAGTCTGAATTAAGGGGAGGCTGTTCGAGGGCTCCATAAGCCTCAGGAAAGGCTCTATGATATATTTTGTTCGAGGGTATGTCTGTTGAGGATTGTTGAGAGATAAGTCTCACATCGGCTAATTAAGGAGTTGATTATACGAATGAAACACATAATGTAGTGCAGTCGATCGCTTAATTAGATTGGCAAATGATATTATAGAGAAATTTATGAGTTAGTTAGGTTAAGCTTTTAGATTAACTAATGTTGTTGGATGGAAGCAATAGGTGTTGAAGCTAAGAAGCATGCTACGAGAACAAACGATGAGGAATCAAGAGCCGATGGCATACGAGGATGTCTCCGGGGAAGCGACGGTGGAAAGCACGTCGGTGGGTAATTACATGTACAATAATGTGGAAGATTTCAACCAAATTTCAGGTTCAGGTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACCGCCCTTCTTATCCTTAA

mRNA sequence

ATGGAGTGGAATAGTGGCAGTCTCATTCCTACCTTTGTTTCTCCACCGTCGCCCTACAACTATTACTACAATTACAATTTGGATCAGTTTCCTGTGTTAGAGACGAAGAAGCAGGCGGTGGAATGTGTGGTTGGAGGAGTGGATGAGGAGAAGAGGAAGAAGAAGAACAGGTTGAGTGAGGATCAGTTGGAGAGGTTAGAGAGATGCTTTCAAGAGGAAGGGAAGCTTGAGCCTGATACCAAAATGCAGCTATCAAAGGAACTTGGGCTCCAACCAAGGCAAATTGCTGTTTGGTTTCAAAATAGAAGAGCTCGTTGGAGGACTAAGCAGCTTGAGTATCTCTATGATACCCTCAAACAAGAATTTGACACCATTTCTAAGGAAAAACACACCCTTCAACAAGAGGTGTTGAAGCTAAGAAGCATGCTACGAGAACAAACGATGAGGAATCAAGAGCCGATGGCATACGAGGATGTCTCCGGGGAAGCGACGGTGGAAAGCACGTCGGTGGGTAATTACATGTACAATAATGTGGAAGATTTCAACCAAATTTCAGGTTCAGGTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACCGCCCTTCTTATCCTTAA

Coding sequence (CDS)

ATGGAGTGGAATAGTGGCAGTCTCATTCCTACCTTTGTTTCTCCACCGTCGCCCTACAACTATTACTACAATTACAATTTGGATCAGTTTCCTGTGTTAGAGACGAAGAAGCAGGCGGTGGAATGTGTGGTTGGAGGAGTGGATGAGGAGAAGAGGAAGAAGAAGAACAGGTTGAGTGAGGATCAGTTGGAGAGGTTAGAGAGATGCTTTCAAGAGGAAGGGAAGCTTGAGCCTGATACCAAAATGCAGCTATCAAAGGAACTTGGGCTCCAACCAAGGCAAATTGCTGTTTGGTTTCAAAATAGAAGAGCTCGTTGGAGGACTAAGCAGCTTGAGTATCTCTATGATACCCTCAAACAAGAATTTGACACCATTTCTAAGGAAAAACACACCCTTCAACAAGAGGTGTTGAAGCTAAGAAGCATGCTACGAGAACAAACGATGAGGAATCAAGAGCCGATGGCATACGAGGATGTCTCCGGGGAAGCGACGGTGGAAAGCACGTCGGTGGGTAATTACATGTACAATAATGTGGAAGATTTCAACCAAATTTCAGGTTCAGGTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACCGCCCTTCTTATCCTTAA

Protein sequence

MEWNSGSLIPTFVSPPSPYNYYYNYNLDQFPVLETKKQAVECVVGGVDEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATVESTSVGNYMYNNVEDFNQISGSGPPFWWGAEAAHRPSYP
Homology
[Close]
BLAST of Cp4.1LG10g04300 vs. Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 91/220 (41.36%), Postives = 125/220 (56.82%), Query Frame = 1 

Query: 1   MEWNSGSLIPT----FVSPPSP----YNYYYNYNLDQF-------------PVLETKKQA 60
           MEW++ S +      F+ PP P    +N  +++N D +             PV+   +  
Sbjct: 1   MEWSTTSNVENVRVAFMPPPWPESSSFNSLHSFNFDPYAGNSYTPGDTQTGPVISVPES- 60

Query: 61  VECVVGGV----DEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQI 120
            E ++       +  +  KK RL+  QL  LER FQEE KL+ D K++LS+ELGLQPRQI
Sbjct: 61  -EKIMNAYRFPNNNNEMIKKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQI 120

Query: 121 AVWFQNRRARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQ-TMRNQEPM 180
           AVWFQNRRARW+ KQLE LYD+L+QE+D +S+EK  L  EV KLR++LR+Q  ++ Q   
Sbjct: 121 AVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRALLRDQGLIKKQISA 180

Query: 181 AYEDVSGEA-TVESTSV-------GNYMYNNVEDFNQISG 187
               VSGE  TVE +SV        N   N +   NQ+ G
Sbjct: 181 GTIKVSGEEDTVEISSVVVAHPRTENMNANQITGGNQVYG 218

[Close]
BLAST of Cp4.1LG10g04300 vs. Swiss-Prot
Match: ATB22_ARATH (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-26
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 51  KRKKKNRLSEDQLERLERCFQEE--------GKLEPDTKMQLSKELGLQPRQIAVWFQNR 110
           + KKK +++ +QL+ LER FQEE         KL PD KM+LSKELGLQPRQIAVWFQNR
Sbjct: 68  QEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNR 127

Query: 111 RARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQT 148
           +ARW+ KQLE+LY++L+QEFD +S+EK  LQ+E+++L+SM+RE +
Sbjct: 128 KARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMIREDS 172

[Close]
BLAST of Cp4.1LG10g04300 vs. Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.4e-21
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 1 

Query: 48  DEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWR 107
           DE+  +KK RL+ +Q+  LER F+EE KLEP+ K +L+++LGLQPRQ+AVWFQNRRARW+
Sbjct: 73  DEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 132

Query: 108 TKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATVE 167
           TKQLE  +D LK  FD +  +   L Q+  +L S +   T + QE     + S  A V+
Sbjct: 133 TKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVD 191

[Close]
BLAST of Cp4.1LG10g04300 vs. Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.4e-21
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 1 

Query: 48  DEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWR 107
           DE+  +KK RL+ +Q+  LER F+EE KLEP+ K +L+++LGLQPRQ+AVWFQNRRARW+
Sbjct: 71  DEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 130

Query: 108 TKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATVE 167
           TKQLE  +D LK  FD +  +   L Q+  +L S +   T + QE     + S  A V+
Sbjct: 131 TKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVD 189

[Close]
BLAST of Cp4.1LG10g04300 vs. Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 7.6e-21
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1 

Query: 53  KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLE 112
           +KK RL+ +Q++ LE+ F+   KLEP+ KMQL++ LGLQPRQIA+WFQNRRARW+TKQLE
Sbjct: 84  EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLE 143

Query: 113 YLYDTLKQEFDTISKEKHTLQQEVLKLRSML-----REQT 148
             YDTLK++FDT+  E   LQ    KL++ +     REQT
Sbjct: 144 KDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQT 183

[Close]
BLAST of Cp4.1LG10g04300 vs. TrEMBL
Match: A0A0A0KET9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449320 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.2e-67
Identity = 153/228 (67.11%), Postives = 166/228 (72.81%), Query Frame = 1 

Query: 1   MEWNSG--SLIPTFVSPPSP--------YNYYYN--YNLDQFPVLETKKQAV------EC 60
           MEWN+G  S    FVSPP          YNY +N  YNLD FPV+ET             
Sbjct: 1   MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFPVVETTTPVATGEGEQNM 60

Query: 61  VVGGVDEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNR 120
              GVD +K+K   RLS+DQLE LER FQEE KL+PD KM+LSKELGLQPRQIAVWFQNR
Sbjct: 61  AGAGVDHQKKK---RLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNR 120

Query: 121 RARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGE 180
           RARW+TKQLE+LYDTLKQ+FDTISKEKH LQQEV+KLRSMLREQT RNQ  MA+ DVSGE
Sbjct: 121 RARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQGSMAHTDVSGE 180

Query: 181 -ATVESTSV-----GNYMYNNVEDFNQISGSGPPFWWGAEAAHRPSYP 205
             TVE TSV      NYMYN VEDFNQIS S PPFWWGAEAAH PSYP
Sbjct: 181 ETTVECTSVEILSCNNYMYN-VEDFNQISASAPPFWWGAEAAHLPSYP 224

[Close]
BLAST of Cp4.1LG10g04300 vs. TrEMBL
Match: A0A061ESP9_THECC (Homeobox-leucine zipper protein ATHB-51 OS=Theobroma cacao GN=TCM_022391 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.6e-47
Identity = 118/230 (51.30%), Postives = 149/230 (64.78%), Query Frame = 1 

Query: 1   MEWNSGSLIPTFVSPPSP-YNYYYNYNLDQFPVLETKK----QAVECVVGGVDE---EKR 60
           M+WN    + TFVS P P  N+ YNYN DQ+P +E K     +AV  +V  +D+     +
Sbjct: 1   MDWNG--TLRTFVSRPEPSLNFLYNYNYDQYPGMEMKHPGLVEAVHGLVPALDKNSYNNQ 60

Query: 61  KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLE 120
           +KK RL+ DQL+ LER FQEE KL+PD KM+LS+ELGLQPRQIAVWFQNRRARW+ KQLE
Sbjct: 61  EKKKRLTTDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLE 120

Query: 121 YLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATVESTSVG- 180
            LYD LKQE+D IS+EK  LQ+EV+KL+ MLREQ  +N     Y D+SGE TVESTS+  
Sbjct: 121 RLYDALKQEYDVISREKQKLQEEVMKLKGMLREQATKNPGSTGYTDMSGEETVESTSIRC 180

Query: 181 -----------------NYMYNNVEDFNQISGSGPPFWWGAEAAHRPSYP 205
                            NY++ NV+++N IS    P+W    A   PSYP
Sbjct: 181 SNKPRVVANHHHQIAECNYVF-NVDEYNPISS---PYW----AVQLPSYP 220

[Close]
BLAST of Cp4.1LG10g04300 vs. TrEMBL
Match: A0A0A0LED8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G748220 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.8e-46
Identity = 113/185 (61.08%), Postives = 134/185 (72.43%), Query Frame = 1 

Query: 1   MEWNSGSLIPTFVS--PPSPYNYYYNYNLDQFPVLETKKQAV--------ECVVGGVDEE 60
           MEW +GS  P FVS  P S + + YNYNL+QF  ++ K  A+        + +V G+D  
Sbjct: 1   MEWATGSFRP-FVSRAPESSFGFLYNYNLEQFQGVDVKHSAMAGASETVLQGLVPGMDMN 60

Query: 61  KR---KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWR 120
                +KK RLS +QLE LER FQEE KL+PD K +LSKELGLQPRQIAVWFQNRRARW+
Sbjct: 61  SYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWK 120

Query: 121 TKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLRE-QTMRNQEPMAYEDVSGEATVE 172
            KQLE+LYDTLKQEFD IS+EKH LQ+EV+KL+SMLRE Q  RNQ    Y D+SGE TVE
Sbjct: 121 AKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVE 180

[Close]
BLAST of Cp4.1LG10g04300 vs. TrEMBL
Match: A0A097A1J6_CUCSA (Multicellular trichome development class I homeodomain-leucine zipper transcription factor OS=Cucumis sativus GN=Gl PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-45
Identity = 114/187 (60.96%), Postives = 135/187 (72.19%), Query Frame = 1 

Query: 1   MEWNSGSLIPTFVS--PPSPYNYYYNYNLDQFPV--LETKKQAV--------ECVVGGVD 60
           MEW +GS  P FVS  P S + + YNYNL+QF V  ++ K  A+        + +V G+D
Sbjct: 1   MEWATGSFRP-FVSRAPESSFGFLYNYNLEQFQVSGVDVKHSAMAGASETVLQGLVPGMD 60

Query: 61  EEKR---KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRAR 120
                  +KK RLS +QLE LER FQEE KL+PD K +LSKELGLQPRQIAVWFQNRRAR
Sbjct: 61  MNSYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRAR 120

Query: 121 WRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLRE-QTMRNQEPMAYEDVSGEAT 172
           W+ KQLE+LYDTLKQEFD IS+EKH LQ+EV+KL+SMLRE Q  RNQ    Y D+SGE T
Sbjct: 121 WKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEET 180

[Close]
BLAST of Cp4.1LG10g04300 vs. TrEMBL
Match: D7TIZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g04200 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-44
Identity = 109/216 (50.46%), Postives = 140/216 (64.81%), Query Frame = 1 

Query: 1   MEWNSGSLIPTFVSPPSPYNYYYNYNLDQFPVLETKK----QAVECVVGGVDEEK---RK 60
           M+WN G+L P    P S + + YNYN D +P +E K     +    +V  +D+     ++
Sbjct: 1   MDWN-GNLRPFVSRPESSFTFLYNYNYDPYPGMEVKHPVSAETAHAMVRPMDKSSYGNQE 60

Query: 61  KKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLEY 120
           KK RL+ +QLE LER FQEE KLEPD KM+L++ELGLQPRQIAVWFQNRRARW+TK+LE 
Sbjct: 61  KKKRLTNEQLESLERSFQEEIKLEPDRKMKLARELGLQPRQIAVWFQNRRARWKTKELER 120

Query: 121 LYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATVESTSVG-- 180
           LYD LKQE+D +SKEK  LQ+EV KL+ +LREQ  R Q  M Y +VSGE TVESTS+   
Sbjct: 121 LYDVLKQEYDLMSKEKQKLQEEVSKLKGILREQATRKQVSMGYTEVSGEETVESTSITIR 180

Query: 181 ---------------NYMYNNVEDFNQISGSGPPFW 193
                          NY+Y   E++N +S   PP+W
Sbjct: 181 SSNKPRGLSHQIADCNYVY-TAEEYNPVS---PPYW 211

[Close]
BLAST of Cp4.1LG10g04300 vs. TAIR10
Match: AT5G03790.1 (AT5G03790.1 homeobox 51)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-29
Identity = 91/220 (41.36%), Postives = 125/220 (56.82%), Query Frame = 1 

Query: 1   MEWNSGSLIPT----FVSPPSP----YNYYYNYNLDQF-------------PVLETKKQA 60
           MEW++ S +      F+ PP P    +N  +++N D +             PV+   +  
Sbjct: 1   MEWSTTSNVENVRVAFMPPPWPESSSFNSLHSFNFDPYAGNSYTPGDTQTGPVISVPES- 60

Query: 61  VECVVGGV----DEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQI 120
            E ++       +  +  KK RL+  QL  LER FQEE KL+ D K++LS+ELGLQPRQI
Sbjct: 61  -EKIMNAYRFPNNNNEMIKKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQI 120

Query: 121 AVWFQNRRARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQ-TMRNQEPM 180
           AVWFQNRRARW+ KQLE LYD+L+QE+D +S+EK  L  EV KLR++LR+Q  ++ Q   
Sbjct: 121 AVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRALLRDQGLIKKQISA 180

Query: 181 AYEDVSGEA-TVESTSV-------GNYMYNNVEDFNQISG 187
               VSGE  TVE +SV        N   N +   NQ+ G
Sbjct: 181 GTIKVSGEEDTVEISSVVVAHPRTENMNANQITGGNQVYG 218

[Close]
BLAST of Cp4.1LG10g04300 vs. TAIR10
Match: AT2G36610.1 (AT2G36610.1 homeobox protein 22)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 51  KRKKKNRLSEDQLERLERCFQEE--------GKLEPDTKMQLSKELGLQPRQIAVWFQNR 110
           + KKK +++ +QL+ LER FQEE         KL PD KM+LSKELGLQPRQIAVWFQNR
Sbjct: 68  QEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNR 127

Query: 111 RARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQT 148
           +ARW+ KQLE+LY++L+QEFD +S+EK  LQ+E+++L+SM+RE +
Sbjct: 128 KARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMIREDS 172

[Close]
BLAST of Cp4.1LG10g04300 vs. TAIR10
Match: AT1G69780.1 (AT1G69780.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-22
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1 

Query: 53  KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLE 112
           +KK RL+ +Q++ LE+ F+   KLEP+ KMQL++ LGLQPRQIA+WFQNRRARW+TKQLE
Sbjct: 84  EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLE 143

Query: 113 YLYDTLKQEFDTISKEKHTLQQEVLKLRSML-----REQT 148
             YDTLK++FDT+  E   LQ    KL++ +     REQT
Sbjct: 144 KDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQT 183

[Close]
BLAST of Cp4.1LG10g04300 vs. TAIR10
Match: AT4G40060.1 (AT4G40060.1 homeobox protein 16)

HSP 1 Score: 98.2 bits (243), Expect = 6.2e-21
Identity = 54/125 (43.20%), Postives = 81/125 (64.80%), Query Frame = 1 

Query: 53  KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLE 112
           +KK RL  DQ++ LE+ F+ E KLEP+ K +L++ELGLQPRQ+AVWFQNRRARW+TKQLE
Sbjct: 58  EKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLE 117

Query: 113 Y-------LYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATV 171
                    YD+L+  FD++ ++  +L QE+ K+++ +  +   N      E V  E   
Sbjct: 118 KDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAITEGVKEEEVH 177

[Close]
BLAST of Cp4.1LG10g04300 vs. TAIR10
Match: AT5G15150.1 (AT5G15150.1 homeobox 3)

HSP 1 Score: 98.2 bits (243), Expect = 6.2e-21
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 1 

Query: 53  KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLE 112
           +KK RL+ +Q+  LE+ F+   KLEP+ KMQL+K LGLQPRQIA+WFQNRRARW+TKQLE
Sbjct: 114 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLE 173

Query: 113 YLYDTLKQEFDTISKEKHT-------LQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATV 172
             YD+LK++FD +  +  +       L  E++ L+   R+++ + +   A    S   + 
Sbjct: 174 RDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVALKKHDRKESAKIKREFAEASWSNNGST 233

Query: 173 ESTSVGNYMYNNVEDFNQIS 186
           E     N   NN  D N +S
Sbjct: 234 E-----NNHNNNSSDANHVS 248

[Close]
BLAST of Cp4.1LG10g04300 vs. NCBI nr
Match: gi|778717339|ref|XP_004143373.2| (PREDICTED: homeobox-leucine zipper protein ATHB-22-like [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 3.1e-67
Identity = 153/228 (67.11%), Postives = 166/228 (72.81%), Query Frame = 1 

Query: 1   MEWNSG--SLIPTFVSPPSP--------YNYYYN--YNLDQFPVLETKKQAV------EC 60
           MEWN+G  S    FVSPP          YNY +N  YNLD FPV+ET             
Sbjct: 1   MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFPVVETTTPVATGEGEQNM 60

Query: 61  VVGGVDEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNR 120
              GVD +K+K   RLS+DQLE LER FQEE KL+PD KM+LSKELGLQPRQIAVWFQNR
Sbjct: 61  AGAGVDHQKKK---RLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNR 120

Query: 121 RARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGE 180
           RARW+TKQLE+LYDTLKQ+FDTISKEKH LQQEV+KLRSMLREQT RNQ  MA+ DVSGE
Sbjct: 121 RARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQGSMAHTDVSGE 180

Query: 181 -ATVESTSV-----GNYMYNNVEDFNQISGSGPPFWWGAEAAHRPSYP 205
             TVE TSV      NYMYN VEDFNQIS S PPFWWGAEAAH PSYP
Sbjct: 181 ETTVECTSVEILSCNNYMYN-VEDFNQISASAPPFWWGAEAAHLPSYP 224

[Close]
BLAST of Cp4.1LG10g04300 vs. NCBI nr
Match: gi|659125128|ref|XP_008462523.1| (PREDICTED: homeobox-leucine zipper protein ATHB-22-like [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 2.3e-65
Identity = 150/227 (66.08%), Postives = 168/227 (74.01%), Query Frame = 1 

Query: 1   MEWNSG--SLIPTFVS--PPSP------YNYYYN--YNLDQFPVLETKKQAV-----ECV 60
           MEWN+G  S    FVS  P S       YNY +N  YNLD FPV+ET  +       + +
Sbjct: 1   MEWNNGNISFSSNFVSQLPQSSSSSALLYNYNFNCSYNLDHFPVIETATRVATGEGKQNM 60

Query: 61  VGGVDEEKRKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRR 120
            GGVD +K+K   RLS+DQLE LER FQEE KL+PD KM+LS ELGLQPRQIAVWFQNRR
Sbjct: 61  AGGVDHQKKK---RLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQPRQIAVWFQNRR 120

Query: 121 ARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGE- 180
           ARW+TKQLE+LYDTLKQ+FDTISKEKH LQQEV+KLR+MLREQT RN   MA+ D+SGE 
Sbjct: 121 ARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLREQTTRNAGSMAHTDISGEE 180

Query: 181 ATVESTSV-----GNYMYNNVEDFNQISGSGPPFWWGAEAAHRPSYP 205
            TVE TSV      NYMYN VEDFNQIS S PPFWWGAEAAH PSYP
Sbjct: 181 TTVECTSVEILSCNNYMYN-VEDFNQISASAPPFWWGAEAAHLPSYP 223

[Close]
BLAST of Cp4.1LG10g04300 vs. NCBI nr
Match: gi|590631469|ref|XP_007027573.1| (Homeobox-leucine zipper protein ATHB-51 [Theobroma cacao])

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-46
Identity = 118/230 (51.30%), Postives = 149/230 (64.78%), Query Frame = 1 

Query: 1   MEWNSGSLIPTFVSPPSP-YNYYYNYNLDQFPVLETKK----QAVECVVGGVDEEK---R 60
           M+WN    + TFVS P P  N+ YNYN DQ+P +E K     +AV  +V  +D+     +
Sbjct: 1   MDWNG--TLRTFVSRPEPSLNFLYNYNYDQYPGMEMKHPGLVEAVHGLVPALDKNSYNNQ 60

Query: 61  KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLE 120
           +KK RL+ DQL+ LER FQEE KL+PD KM+LS+ELGLQPRQIAVWFQNRRARW+ KQLE
Sbjct: 61  EKKKRLTTDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLE 120

Query: 121 YLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATVESTSVG- 180
            LYD LKQE+D IS+EK  LQ+EV+KL+ MLREQ  +N     Y D+SGE TVESTS+  
Sbjct: 121 RLYDALKQEYDVISREKQKLQEEVMKLKGMLREQATKNPGSTGYTDMSGEETVESTSIRC 180

Query: 181 -----------------NYMYNNVEDFNQISGSGPPFWWGAEAAHRPSYP 205
                            NY++ NV+++N IS    P+W    A   PSYP
Sbjct: 181 SNKPRVVANHHHQIAECNYVF-NVDEYNPISS---PYW----AVQLPSYP 220

[Close]
BLAST of Cp4.1LG10g04300 vs. NCBI nr
Match: gi|449440459|ref|XP_004138002.1| (PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 6.8e-46
Identity = 113/185 (61.08%), Postives = 134/185 (72.43%), Query Frame = 1 

Query: 1   MEWNSGSLIPTFVS--PPSPYNYYYNYNLDQFPVLETKKQAV--------ECVVGGVDEE 60
           MEW +GS  P FVS  P S + + YNYNL+QF  ++ K  A+        + +V G+D  
Sbjct: 1   MEWATGSFRP-FVSRAPESSFGFLYNYNLEQFQGVDVKHSAMAGASETVLQGLVPGMDMN 60

Query: 61  KR---KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWR 120
                +KK RLS +QLE LER FQEE KL+PD K +LSKELGLQPRQIAVWFQNRRARW+
Sbjct: 61  SYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWK 120

Query: 121 TKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLRE-QTMRNQEPMAYEDVSGEATVE 172
            KQLE+LYDTLKQEFD IS+EKH LQ+EV+KL+SMLRE Q  RNQ    Y D+SGE TVE
Sbjct: 121 AKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVE 180

[Close]
BLAST of Cp4.1LG10g04300 vs. NCBI nr
Match: gi|659084232|ref|XP_008442780.1| (PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 3.4e-45
Identity = 114/187 (60.96%), Postives = 135/187 (72.19%), Query Frame = 1 

Query: 1   MEWNSGSLIPTFVS--PPSPYNYYYNYNLDQFPV--LETKKQAV--------ECVVGGVD 60
           MEW +GS  P FVS  P S + + YNYNL+QF V  ++ K  A+        + +V G+D
Sbjct: 1   MEWATGSFRP-FVSRAPESSFGFLYNYNLEQFQVSGVDVKHSAMAGASETVLQGLVPGMD 60

Query: 61  EEKR---KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRAR 120
                  +KK RLS +QLE LER FQEE KL+PD K +LSKELGLQPRQIAVWFQNRRAR
Sbjct: 61  MNSYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRAR 120

Query: 121 WRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLRE-QTMRNQEPMAYEDVSGEAT 172
           W+ KQLE+LYDTLKQEFD IS+EKH LQ+EV+KL+SMLRE Q  RNQ    Y D+SGE T
Sbjct: 121 WKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEET 180

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATB51_ARATH2.2e-2841.36Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB... [more]
ATB22_ARATH2.1e-2659.05Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 ... [more]
HOX16_ORYSI4.4e-2147.90Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=... [more]
HOX16_ORYSJ4.4e-2147.90Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 P... [more]
ATB13_ARATH7.6e-2156.00Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 ... [more]
BLAST of Cp4.1LG10g04300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KET9_CUCSA2.2e-6767.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449320 PE=4 SV=1[more]
A0A061ESP9_THECC9.6e-4751.30Homeobox-leucine zipper protein ATHB-51 OS=Theobroma cacao GN=TCM_022391 PE=4 SV... [more]
A0A0A0LED8_CUCSA4.8e-4661.08Uncharacterized protein OS=Cucumis sativus GN=Csa_3G748220 PE=4 SV=1[more]
A0A097A1J6_CUCSA2.4e-4560.96Multicellular trichome development class I homeodomain-leucine zipper transcript... [more]
D7TIZ2_VITVI1.5e-4450.46Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g04200 PE=4 SV=... [more]
BLAST of Cp4.1LG10g04300 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G03790.11.2e-2941.36 homeobox 51[more]
AT2G36610.11.2e-2759.05 homeobox protein 22[more]
AT1G69780.14.3e-2256.00 Homeobox-leucine zipper protein family[more]
AT4G40060.16.2e-2143.20 homeobox protein 16[more]
AT5G15150.16.2e-2142.14 homeobox 3[more]
BLAST of Cp4.1LG10g04300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778717339|ref|XP_004143373.2|3.1e-6767.11PREDICTED: homeobox-leucine zipper protein ATHB-22-like [Cucumis sativus][more]
gi|659125128|ref|XP_008462523.1|2.3e-6566.08PREDICTED: homeobox-leucine zipper protein ATHB-22-like [Cucumis melo][more]
gi|590631469|ref|XP_007027573.1|1.4e-4651.30Homeobox-leucine zipper protein ATHB-51 [Theobroma cacao][more]
gi|449440459|ref|XP_004138002.1|6.8e-4661.08PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2 [Cucumis sati... [more]
gi|659084232|ref|XP_008442780.1|3.4e-4560.96PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1 [Cucumis melo... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR017970Homeobox_CS
IPR009057Homeobox-like_sf
IPR001356Homeobox_dom
IPR000047HTH_motif
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048513 animal organ development
biological_process GO:0009908 flower development
biological_process GO:0048443 stamen development
biological_process GO:0048510 regulation of timing of transition from vegetative to reproductive phase
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0010434 bract formation
biological_process GO:0048507 meristem development
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048827 phyllome development
biological_process GO:0048367 shoot system development
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04300.1Cp4.1LG10g04300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 80..89
score: 3.5E-5coord: 89..105
score: 3.
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 52..107
score: 1.8
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 51..113
score: 1.3
IPR001356Homeobox domainPROFILEPS50071HOMEOBOX_2coord: 49..109
score: 18
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 48..111
score: 8.2
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 43..111
score: 1.5
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 84..107
scor
NoneNo IPR availableunknownCoilCoilcoord: 115..135
scor
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 49..170
score: 1.4
NoneNo IPR availablePANTHERPTHR24326:SF287HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-22-RELATEDcoord: 49..170
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g04300Cucsa.125070Cucumber (Gy14) v1cgycpeB0314
Cp4.1LG10g04300CmaCh03G011820Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g04300CmaCh06G004310Cucurbita maxima (Rimu)cmacpeB807
Cp4.1LG10g04300CmaCh07G008740Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g04300CmoCh14G002470Cucurbita moschata (Rifu)cmocpeB218
Cp4.1LG10g04300CmoCh06G004280Cucurbita moschata (Rifu)cmocpeB761
Cp4.1LG10g04300CmoCh03G011750Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g04300Cla017743Watermelon (97103) v1cpewmB064
Cp4.1LG10g04300Cla018360Watermelon (97103) v1cpewmB078
Cp4.1LG10g04300Csa3G748220Cucumber (Chinese Long) v2cpecuB067
Cp4.1LG10g04300Csa6G449320Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g04300MELO3C009420Melon (DHL92) v3.5.1cpemeB054
Cp4.1LG10g04300MELO3C024507Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g04300ClCG10G019540Watermelon (Charleston Gray)cpewcgB057
Cp4.1LG10g04300CSPI06G25120Wild cucumber (PI 183967)cpecpiB081
Cp4.1LG10g04300CSPI03G34020Wild cucumber (PI 183967)cpecpiB062
Cp4.1LG10g04300Lsi01G012620Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g04300Lsi03G019530Bottle gourd (USVL1VR-Ls)cpelsiB062
Cp4.1LG10g04300MELO3C024507.2Melon (DHL92) v3.6.1cpemedB090
Cp4.1LG10g04300MELO3C009420.2Melon (DHL92) v3.6.1cpemedB071
Cp4.1LG10g04300CsaV3_3G036660Cucumber (Chinese Long) v3cpecucB0069
Cp4.1LG10g04300CsaV3_6G040320Cucumber (Chinese Long) v3cpecucB0093
Cp4.1LG10g04300Bhi03G001155Wax gourdcpewgoB0100
Cp4.1LG10g04300Bhi11G001695Wax gourdcpewgoB0069
Cp4.1LG10g04300CsGy6G024540Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g04300CsGy3G031820Cucumber (Gy14) v2cgybcpeB290
Cp4.1LG10g04300Carg05379Silver-seed gourdcarcpeB1127
Cp4.1LG10g04300Carg10456Silver-seed gourdcarcpeB0337
Cp4.1LG10g04300Carg03720Silver-seed gourdcarcpeB0348
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g04300Cp4.1LG19g03670Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g04300Cp4.1LG03g01240Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG10g04300Cp4.1LG08g10530Cucurbita pepo (Zucchini)cpecpeB106
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g04300Cucurbita maxima (Rimu)cmacpeB254
Cp4.1LG10g04300Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g04300Watermelon (Charleston Gray)cpewcgB071