Cp4.1LG10g04040 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g04040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG10 : 1764535 .. 1764889 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTCTGCCATGAATTTGTTTCAAAAGGCACCTGAAAGAGATATCGTGGCATTGTCGGCTTTGATATCTGGGTATACACGAAATCGTCAGCCAAATGAGGCTGTCAAAACTTTTCTTGAAATGGGTTCTAGGAATGTGAAATCTGATGAGTTTCTATTGGCAAGCTTTATGTCAGCTTGTTCTCACGTGGGTTGATTCATATGTTACCAAGTGCTTAGTTGATCTTTGTGGGGCTCATGTTAGGGCAGCTCTTAAAGATATGAATGCCAAGTGTGGAAACATGAAGCGAGCCATGAATCTGTTTGAAGAAATGCCTAAAAGGGATCTAATTCCCTGTTGTTCTGCAATGTAA

mRNA sequence

ATGCTTTCTGCCATGAATTTGTTTCAAAAGGCACCTGAAAGAGATATCGTGGCATTGTCGGCTTTGATATCTGGGTATACACGAAATCGTCAGCCAAATGAGGCTGTCAAAACTTTTCTTGAAATGGGTTCTAGGAATGTGAAATCTGATGAGTTTCTATTGGCAAGCTTTATGGCAGCTCTTAAAGATATGAATGCCAAGTGTGGAAACATGAAGCGAGCCATGAATCTGTTTGAAGAAATGCCTAAAAGGGATCTAATTCCCTGTTGTTCTGCAATGTAA

Coding sequence (CDS)

ATGCTTTCTGCCATGAATTTGTTTCAAAAGGCACCTGAAAGAGATATCGTGGCATTGTCGGCTTTGATATCTGGGTATACACGAAATCGTCAGCCAAATGAGGCTGTCAAAACTTTTCTTGAAATGGGTTCTAGGAATGTGAAATCTGATGAGTTTCTATTGGCAAGCTTTATGGCAGCTCTTAAAGATATGAATGCCAAGTGTGGAAACATGAAGCGAGCCATGAATCTGTTTGAAGAAATGCCTAAAAGGGATCTAATTCCCTGTTGTTCTGCAATGTAA

Protein sequence

MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAALKDMNAKCGNMKRAMNLFEEMPKRDLIPCCSAM
Homology
[Close]
BLAST of Cp4.1LG10g04040 vs. Swiss-Prot
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-18
Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMA- 60
           M+SA +LF++A   D+ A SALI GY +N QPNEA K F EM ++NVK DEF++   M+ 
Sbjct: 254 MVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSA 313

Query: 61  -------------------------------ALKDMNAKCGNMKRAMNLFEEMPKRDLIP 94
                                          AL DMNAKCG+M RA  LFEEMP+RDL+ 
Sbjct: 314 CSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVS 373

[Close]
BLAST of Cp4.1LG10g04040 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-09
Identity = 36/118 (30.51%), Postives = 54/118 (45.76%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMA- 60
           M  A ++F    E+DIV  S +I GY  N  P E ++ FL+M   N+K D+F +  F++ 
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322

Query: 61  ------------------------------ALKDMNAKCGNMKRAMNLFEEMPKRDLI 88
                                         AL DM AKCG M R   +F+EM ++D++
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIV 380

[Close]
BLAST of Cp4.1LG10g04040 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 33/116 (28.45%), Postives = 57/116 (49.14%), Query Frame = 1 

Query: 3   SAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAA-- 62
           SA  +F K PE+D+VA +++I+G+  N +P EA+  + EM S+ +K D F + S ++A  
Sbjct: 174 SAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA 233

Query: 63  -----------------------------LKDMNAKCGNMKRAMNLFEEMPKRDLI 88
                                        L D+ A+CG ++ A  LF+EM  ++ +
Sbjct: 234 KIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289

[Close]
BLAST of Cp4.1LG10g04040 vs. Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-07
Identity = 28/81 (34.57%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 7   LFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAALKDMNA 66
           LFQ+ PER++V+ + +I GY ++ + ++A++ F EM  RN+ S   ++ + +        
Sbjct: 131 LFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALV-------- 190

Query: 67  KCGNMKRAMNLFEEMPKRDLI 88
           + G +  AMNLFE MP+RD++
Sbjct: 191 QRGRIDEAMNLFERMPRRDVV 203

[Close]
BLAST of Cp4.1LG10g04040 vs. Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-07
Identity = 36/121 (29.75%), Postives = 58/121 (47.93%), Query Frame = 1 

Query: 4   AMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFM----- 63
           A NLF + P+R+ V+ +++ISG+ RN +  +A+  F EM  ++VK D F + S +     
Sbjct: 211 AQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAY 270

Query: 64  --------------------------AALKDMNAKCGNMKRAMNLFEEMPKRDLIPCCSA 94
                                      AL DM  KCG ++  +N+FE  PK+ L  C ++
Sbjct: 271 LGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQL-SCWNS 330

[Close]
BLAST of Cp4.1LG10g04040 vs. TrEMBL
Match: A0A0A0KKK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454340 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-28
Identity = 75/125 (60.00%), Postives = 81/125 (64.80%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFM-- 60
           MLSA NLFQKAPERDI+A SALISGYT+N QPNEAVKTFLEM SRNVK D+F+L S M  
Sbjct: 279 MLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLA 338

Query: 61  ------------------------------AALKDMNAKCGNMKRAMNLFEEMPKRDLIP 94
                                         AAL DMNAKCGNM+RAM LFE+MPKRDLI 
Sbjct: 339 CSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLIS 398

[Close]
BLAST of Cp4.1LG10g04040 vs. TrEMBL
Match: B9HBW1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22400g PE=4 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-22
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAA 60
           M SA  LF +APE+D+VA SALISGY+RN QPNEAVK F EM S NVK DEF++ S M+A
Sbjct: 265 MASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSA 324

Query: 61  LK--------------------------------DMNAKCGNMKRAMNLFEEMPKRDLIP 92
                                             DM+AKCGNM++A+ LF++MP RDLIP
Sbjct: 325 CSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIP 384

[Close]
BLAST of Cp4.1LG10g04040 vs. TrEMBL
Match: F6HKN9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g02780 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 65/125 (52.00%), Postives = 74/125 (59.20%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAA 60
           M SA  +F++APERD+VA SALISGY +N QPNEAVK FLEM SRNVK DEF++ S M+A
Sbjct: 314 MASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSA 373

Query: 61  LK--------------------------------DMNAKCGNMKRAMNLFEEMPKRDLIP 94
                                             DMNAKCG+M RA  LFEEMPKRDLI 
Sbjct: 374 CSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLIS 433

[Close]
BLAST of Cp4.1LG10g04040 vs. TrEMBL
Match: B9SWZ6_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1258590 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFM-- 60
           M +A +LF++AP+RD++A SALISGY +N QPNEAV+ FLEM S+NVK DE+++ S M  
Sbjct: 156 MTTARDLFERAPKRDVIAWSALISGYAQNGQPNEAVRIFLEMESKNVKPDEYIMVSLMSA 215

Query: 61  ------------------------------AALKDMNAKCGNMKRAMNLFEEMPKRDLIP 92
                                         AAL DMNAKCGNM+RA  LFEEMPKRDLI 
Sbjct: 216 CSQLGSLDLARWADCYLSKSSIDIGQTHVIAALIDMNAKCGNMERAKKLFEEMPKRDLIT 275

[Close]
BLAST of Cp4.1LG10g04040 vs. TrEMBL
Match: M5VLF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024189mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-21
Identity = 62/123 (50.41%), Postives = 74/123 (60.16%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMA- 60
           M SA  LF +AP +DIVA SALISGY +N QPNEAVK FLEM +RNVK DEF++ S M+ 
Sbjct: 263 MASARFLFDQAPNKDIVAWSALISGYAQNGQPNEAVKIFLEMSTRNVKPDEFIMVSLMSA 322

Query: 61  -------------------------------ALKDMNAKCGNMKRAMNLFEEMPKRDLIP 92
                                          AL DMNAKCGNM+RA +LF++MPKRD+I 
Sbjct: 323 CSQVGCLQVAKWVDSYVSQSSIDVRQDHVHAALIDMNAKCGNMERATSLFDKMPKRDMIS 382

[Close]
BLAST of Cp4.1LG10g04040 vs. TAIR10
Match: AT5G37570.1 (AT5G37570.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 9.1e-20
Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMA- 60
           M+SA +LF++A   D+ A SALI GY +N QPNEA K F EM ++NVK DEF++   M+ 
Sbjct: 254 MVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSA 313

Query: 61  -------------------------------ALKDMNAKCGNMKRAMNLFEEMPKRDLIP 94
                                          AL DMNAKCG+M RA  LFEEMP+RDL+ 
Sbjct: 314 CSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVS 373

[Close]
BLAST of Cp4.1LG10g04040 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-10
Identity = 36/118 (30.51%), Postives = 54/118 (45.76%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMA- 60
           M  A ++F    E+DIV  S +I GY  N  P E ++ FL+M   N+K D+F +  F++ 
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322

Query: 61  ------------------------------ALKDMNAKCGNMKRAMNLFEEMPKRDLI 88
                                         AL DM AKCG M R   +F+EM ++D++
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIV 380

[Close]
BLAST of Cp4.1LG10g04040 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.5e-10
Identity = 33/116 (28.45%), Postives = 57/116 (49.14%), Query Frame = 1 

Query: 3   SAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAA-- 62
           SA  +F K PE+D+VA +++I+G+  N +P EA+  + EM S+ +K D F + S ++A  
Sbjct: 174 SAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA 233

Query: 63  -----------------------------LKDMNAKCGNMKRAMNLFEEMPKRDLI 88
                                        L D+ A+CG ++ A  LF+EM  ++ +
Sbjct: 234 KIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289

[Close]
BLAST of Cp4.1LG10g04040 vs. TAIR10
Match: AT2G35030.1 (AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 28/81 (34.57%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 7   LFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAALKDMNA 66
           LFQ+ PER++V+ + +I GY ++ + ++A++ F EM  RN+ S   ++ + +        
Sbjct: 131 LFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALV-------- 190

Query: 67  KCGNMKRAMNLFEEMPKRDLI 88
           + G +  AMNLFE MP+RD++
Sbjct: 191 QRGRIDEAMNLFERMPRRDVV 203

[Close]
BLAST of Cp4.1LG10g04040 vs. TAIR10
Match: AT2G42920.1 (AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-08
Identity = 36/121 (29.75%), Postives = 58/121 (47.93%), Query Frame = 1 

Query: 4   AMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFM----- 63
           A NLF + P+R+ V+ +++ISG+ RN +  +A+  F EM  ++VK D F + S +     
Sbjct: 211 AQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAY 270

Query: 64  --------------------------AALKDMNAKCGNMKRAMNLFEEMPKRDLIPCCSA 94
                                      AL DM  KCG ++  +N+FE  PK+ L  C ++
Sbjct: 271 LGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQL-SCWNS 330

[Close]
BLAST of Cp4.1LG10g04040 vs. NCBI nr
Match: gi|778717583|ref|XP_004143391.2| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 8.5e-28
Identity = 75/125 (60.00%), Postives = 81/125 (64.80%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFM-- 60
           MLSA NLFQKAPERDI+A SALISGYT+N QPNEAVKTFLEM SRNVK D+F+L S M  
Sbjct: 279 MLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLA 338

Query: 61  ------------------------------AALKDMNAKCGNMKRAMNLFEEMPKRDLIP 94
                                         AAL DMNAKCGNM+RAM LFE+MPKRDLI 
Sbjct: 339 CSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLIS 398

[Close]
BLAST of Cp4.1LG10g04040 vs. NCBI nr
Match: gi|700193082|gb|KGN48286.1| (hypothetical protein Csa_6G454340 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 8.5e-28
Identity = 75/125 (60.00%), Postives = 81/125 (64.80%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFM-- 60
           MLSA NLFQKAPERDI+A SALISGYT+N QPNEAVKTFLEM SRNVK D+F+L S M  
Sbjct: 279 MLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLA 338

Query: 61  ------------------------------AALKDMNAKCGNMKRAMNLFEEMPKRDLIP 94
                                         AAL DMNAKCGNM+RAM LFE+MPKRDLI 
Sbjct: 339 CSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLIS 398

[Close]
BLAST of Cp4.1LG10g04040 vs. NCBI nr
Match: gi|659125276|ref|XP_008462604.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 5.5e-27
Identity = 73/125 (58.40%), Postives = 79/125 (63.20%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAA 60
           MLSA NLFQKAPERDI+A SALISGYT+N QPNEAV+TFLEM SRNVK D+F+L S M A
Sbjct: 279 MLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVQTFLEMSSRNVKPDKFVLTSLMLA 338

Query: 61  LK--------------------------------DMNAKCGNMKRAMNLFEEMPKRDLIP 94
                                             DMNAKCGNM+RAM LFEEMPKRDLI 
Sbjct: 339 CSQLGNLDLAKWVDSYATGCLVDLRGAHVRAALIDMNAKCGNMERAMYLFEEMPKRDLIS 398

[Close]
BLAST of Cp4.1LG10g04040 vs. NCBI nr
Match: gi|566177580|ref|XP_002309408.2| (hypothetical protein POPTR_0006s22400g [Populus trichocarpa])

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-22
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFMAA 60
           M SA  LF +APE+D+VA SALISGY+RN QPNEAVK F EM S NVK DEF++ S M+A
Sbjct: 265 MASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSA 324

Query: 61  LK--------------------------------DMNAKCGNMKRAMNLFEEMPKRDLIP 92
                                             DM+AKCGNM++A+ LF++MP RDLIP
Sbjct: 325 CSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIP 384

[Close]
BLAST of Cp4.1LG10g04040 vs. NCBI nr
Match: gi|223529919|gb|EEF31847.1| (pentatricopeptide repeat-containing protein, putative [Ricinus communis])

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-22
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 1 

Query: 1   MLSAMNLFQKAPERDIVALSALISGYTRNRQPNEAVKTFLEMGSRNVKSDEFLLASFM-- 60
           M +A +LF++AP+RD++A SALISGY +N QPNEAV+ FLEM S+NVK DE+++ S M  
Sbjct: 156 MTTARDLFERAPKRDVIAWSALISGYAQNGQPNEAVRIFLEMESKNVKPDEYIMVSLMSA 215

Query: 61  ------------------------------AALKDMNAKCGNMKRAMNLFEEMPKRDLIP 92
                                         AAL DMNAKCGNM+RA  LFEEMPKRDLI 
Sbjct: 216 CSQLGSLDLARWADCYLSKSSIDIGQTHVIAALIDMNAKCGNMERAKKLFEEMPKRDLIT 275

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP403_ARATH1.6e-1844.00Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis th... [more]
PP219_ARATH6.8e-0930.51Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th... [more]
PP330_ARATH1.2e-0828.45Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
PP185_ARATH3.7e-0734.57Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop... [more]
PP200_ARATH6.3e-0729.75Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG10g04040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKK4_CUCSA5.9e-2860.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454340 PE=4 SV=1[more]
B9HBW1_POPTR1.7e-2249.59Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22400g PE=4 SV=2[more]
F6HKN9_VITVI2.2e-2252.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g02780 PE=4 SV=... [more]
B9SWZ6_RICCO2.2e-2250.41Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
M5VLF1_PRUPE2.4e-2150.41Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024189mg PE=4 SV=1[more]
BLAST of Cp4.1LG10g04040 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G37570.19.1e-2044.00 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G08820.13.8e-1030.51 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G21065.16.5e-1028.45 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G35030.12.1e-0834.57 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G42920.13.6e-0829.75 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of Cp4.1LG10g04040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778717583|ref|XP_004143391.2|8.5e-2860.00PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Cucum... [more]
gi|700193082|gb|KGN48286.1|8.5e-2860.00hypothetical protein Csa_6G454340 [Cucumis sativus][more]
gi|659125276|ref|XP_008462604.1|5.5e-2758.40PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Cucum... [more]
gi|566177580|ref|XP_002309408.2|2.4e-2249.59hypothetical protein POPTR_0006s22400g [Populus trichocarpa][more]
gi|223529919|gb|EEF31847.1|3.1e-2250.41pentatricopeptide repeat-containing protein, putative [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04040.1Cp4.1LG10g04040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 66..85
score: 0.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 15..52
score: 2.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 19..50
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 15..49
score: 9.986coord: 54..88
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..93
score: 6.4
NoneNo IPR availablePANTHERPTHR24015:SF139SUBFAMILY NOT NAMEDcoord: 1..93
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g04040CsaV3_6G040910Cucumber (Chinese Long) v3cpecucB0093
Cp4.1LG10g04040Bhi03G001400Wax gourdcpewgoB0101
Cp4.1LG10g04040CsGy6G025270Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g04040Carg05346Silver-seed gourdcarcpeB1128
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g04040Cp4.1LG19g05180Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g04040Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG10g04040Cucurbita pepo (Zucchini)cpecpeB106
Cp4.1LG10g04040Cucumber (Gy14) v1cgycpeB0145
Cp4.1LG10g04040Cucumber (Gy14) v1cgycpeB0638
Cp4.1LG10g04040Cucurbita maxima (Rimu)cmacpeB254
Cp4.1LG10g04040Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g04040Cucurbita maxima (Rimu)cmacpeB807
Cp4.1LG10g04040Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g04040Cucurbita moschata (Rifu)cmocpeB218
Cp4.1LG10g04040Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g04040Cucurbita moschata (Rifu)cmocpeB761
Cp4.1LG10g04040Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g04040Wild cucumber (PI 183967)cpecpiB059
Cp4.1LG10g04040Wild cucumber (PI 183967)cpecpiB081
Cp4.1LG10g04040Cucumber (Chinese Long) v2cpecuB063
Cp4.1LG10g04040Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g04040Bottle gourd (USVL1VR-Ls)cpelsiB047
Cp4.1LG10g04040Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g04040Bottle gourd (USVL1VR-Ls)cpelsiB062
Cp4.1LG10g04040Watermelon (Charleston Gray)cpewcgB057
Cp4.1LG10g04040Watermelon (Charleston Gray)cpewcgB067
Cp4.1LG10g04040Watermelon (Charleston Gray)cpewcgB071
Cp4.1LG10g04040Watermelon (97103) v1cpewmB064
Cp4.1LG10g04040Watermelon (97103) v1cpewmB078
Cp4.1LG10g04040Watermelon (97103) v1cpewmB092
Cp4.1LG10g04040Melon (DHL92) v3.5.1cpemeB054
Cp4.1LG10g04040Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g04040Cucumber (Gy14) v2cgybcpeB290
Cp4.1LG10g04040Melon (DHL92) v3.6.1cpemedB071
Cp4.1LG10g04040Melon (DHL92) v3.6.1cpemedB090
Cp4.1LG10g04040Silver-seed gourdcarcpeB0337
Cp4.1LG10g04040Silver-seed gourdcarcpeB0348
Cp4.1LG10g04040Silver-seed gourdcarcpeB0866
Cp4.1LG10g04040Cucumber (Chinese Long) v3cpecucB0069
Cp4.1LG10g04040Wax gourdcpewgoB0066