Cp4.1LG10g03950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g03950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionVacuolar protein sorting-associated protein 55 like
LocationCp4.1LG10 : 1722635 .. 1725277 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCAAAAGAAAGAAGAAGAAGAAGAATCCCTCTTAGGCCGGACCTCAATTCTTGCCTTCTTCGTCGCGATTGAGGGCAAGAATCATCGCGCATCGCTGCTGCCGGAACTTCTAGCTGATTGTAATGGCGATGACATTAGAAGGTACAGTTTGCAAATTTTCCATATTAATTTGATTTCTTGCGATGATAAGCCAGTTACTGAACTGAATTTTTGCCGGCTTAAGGATGAGCGCTTTAGAATTTATGCGTAAACTTAGTCTTATACCAGGTTTCCGAACGATGGATTTTCGTCGACTAAGAATTTATTTGTTCGCAGCTATTATGGAACGAGGGATTTAAGGGAGCAGTGTCGATTTGAATTTATTGGGAAATTGTTGGGGATTGTATCTTCTATCTCGTATTTGAATGAAGTTGTGGACATGGGGAGAATCATGCATGACACAGGAACGGCTAGTCTGAGGGGATTTTTCATTGTTCATAAACTGTTGTTGAATTTTCGTCGATGTTCTTAAGTACTTTATTCTCTGTATGGTAGTTACAGAATGTATGGAGCAAGAAAATGCAAAAACCCTTCCTGAATAGGATTGAAAGTGATCCCATGATCTTGAATTTGAGTGTGTGATCCCAATCGGTTTGAGAGGGGAACAAAATATTCCTTATAAGAGTGTGGAAACCTCTCCCTAATAGATGTGTTTTAAAGTCGTGAGGCTGACGGTGATACGTAACGGGCTTAAGGCAACGAAGCATTCCTTATAAGGGTGTGGAAAACTTTTTCCTAACAGACACGTTTTAAAATCATGAGGTTGACGGCGATATGTAATAGGCCAAAGCAAAGCAGACAATATCTGGTAGCGGTGGGTTTGGGCTGTTACACATGGTATGAGAGACAAATATCGGGCGGTGTGCCAGCAAGGACGCCAGACCCCCAAGGAAGTGGATTGTGAGATCCCATATTGGTTGGAGAGGAGAACGAAACATTCCTTATATGTATGTGGAAACCTCTCCGTAACAGACGCGTTATAAAACCGTGAGGCTGATGACGATACCTAATGGGCCAAAGCGGACAATATCCGCTAGCGACAGGCTTGGGCTGTTACATTAAGTTTATCTCCCTGTCTATTGAGAACAAATATAAGTATATCTAATAACCTGCAAAATCAGGTCAAAACCATTCTCAATGAAGCTGTACAAAGTGATTCCATTTTCTAGCTTTGAGATATCAGTATATTTGTTAATTGTTCTTAACATGGTTGTTGGTCAATACTATATACCACTGCCCTAGAGTTTCATTTAAACCATTTGGTCCATTTGTTGCTCGTTTTCGCCTTTAGATGTATCTGTCATTTAACGTTAACTAATGTTTTTGATCTTCATTGGGCGGTGGCTCGTGCTGTTCGGGGAACGTGGATGGACCTCATTTCTGCAGTGTGAGTCGAATTTGTCAATACTCTGTAACCATAGTTCTGTTTTCTGATGTCTAACTTTATGAAAAAAATCTAAGAAAACGTCCCTCGGTCGCGCAGGTTAGCTGGGCTCGCGTTTATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGTATGTTTTATAGTACACTTGTAATGGTTCTCTATCAGGAGGATTCCCTTTTATCTCTCAGTATGATTGTTAGAATTTTGAACGACTATTTTTCACCTGATTTTGTTATCATCCTGGCAGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGGTGAACATTAAGTTTGTTAGTTTTCAATCGATAACTTCTAATGACTGCTAAGCATGTTTTCTCTGCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGGTGAGTATCTCTTAAGCATTCATATTGAAAATAGGTTCTCTTCAATTAAATGAACTAACCTTATGGAGATATGCTTGTGTCCTGGTTTTTGAGAAACACGATGTTCTTATTAATGATATCGTGATGCAAGTATATCGACAGTATTCGTTATATCTCGTGGTGTCACCCCTTGCATACACTCCCATCGATTAATTGTATCGCTTCATTTAGAAGTCCACATCATTGTGCTTACAAAGATTGAAAACGTAACAATACCAACACTCGAGTGCCTCGTCCTTCCCTTCGTGTTCTAACTTTTATCCTTCTTTCTGGCTGGTGTTCGTGTCGTTGCAACTTTCTAGATGGATAGGTGCTGCTAAGTTCTTGACAGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCCATATTAATTCCAGAAGATTACAACAATTTCTTGTGTTAAATTTTAATGCGTTTCTTTTGAACAGTTGATAACAAGAAGAAACTTGCAGTGGGGGAAAGGAAACCGAGTTCTAAGTTTCTCATATGTAAATTAATCTAATGTATGATAGTAGTTCTCTTTTTTTCTTCTGTTCTTATTCTGTTCTATTAATGCTTGTGAATGGAAATAAATCAGTATTTGGCAAAT

mRNA sequence

AGCCAAAAGAAAGAAGAAGAAGAAGAATCCCTCTTAGGCCGGACCTCAATTCTTGCCTTCTTCGTCGCGATTGAGGGCAAGAATCATCGCGCATCGCTGCTGCCGGAACTTCTAGCTGATTGTAATGGCGATGACATTAGAAGATGTATCTGTCATTTAACGTTAACTAATGTTTTTGATCTTCATTGGGCGGTGGCTCGTGCTGTTCGGGGAACGTGGATGGACCTCATTTCTGCAGTGTTAGCTGGGCTCGCGTTTATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACAGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCCATATTAATTCCAGAAGATTACAACAATTTCTTGTGTTAAATTTTAATGCGTTTCTTTTGAACAGTTGATAACAAGAAGAAACTTGCAGTGGGGGAAAGGAAACCGAGTTCTAAGTTTCTCATATGTAAATTAATCTAATGTATGATAGTAGTTCTCTTTTTTTCTTCTGTTCTTATTCTGTTCTATTAATGCTTGTGAATGGAAATAAATCAGTATTTGGCAAAT

Coding sequence (CDS)

AGCCAAAAGAAAGAAGAAGAAGAAGAATCCCTCTTAGGCCGGACCTCAATTCTTGCCTTCTTCGTCGCGATTGAGGGCAAGAATCATCGCGCATCGCTGCTGCCGGAACTTCTAGCTGATTGTAATGGCGATGACATTAGAAGATGTATCTGTCATTTAACGTTAACTAATGTTTTTGATCTTCATTGGGCGGTGGCTCGTGCTGTTCGGGGAACGTGGATGGACCTCATTTCTGCAGTGTTAGCTGGGCTCGCGTTTATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACAGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA

Protein sequence

SQKKEEEEESLLGRTSILAFFVAIEGKNHRASLLPELLADCNGDDIRRCICHLTLTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Homology
[Close]
BLAST of Cp4.1LG10g03950 vs. Swiss-Prot
Match: VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-27
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 140
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 141 IGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVL 189
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]
BLAST of Cp4.1LG10g03950 vs. TrEMBL
Match: A0A0A0KHI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G453780 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.6e-62
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 1 

Query: 74  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 133
           MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 1   MDLIFAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60

Query: 134 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 193
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120

Query: 194 SLEDDW 200
           SLEDDW
Sbjct: 121 SLEDDW 126

[Close]
BLAST of Cp4.1LG10g03950 vs. TrEMBL
Match: V4S7C1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012797mg PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-55
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 1 

Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 140
           LAGLAFMFSSSILLQILACA+YNNWWP+LSALMYVLVPMPCLFFGGGSTQFL SRDGGGW
Sbjct: 87  LAGLAFMFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGW 146

Query: 141 IGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 200
           I AAKFLTGAS VGSLAIPIILRHA MI+TGAMFIEF SFFIFVCTV+CFHR SLEDDW
Sbjct: 147 IDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 205

[Close]
BLAST of Cp4.1LG10g03950 vs. TrEMBL
Match: Q93Z28_ARATH (AT3g11530/F24K9_21 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.5e-55
Identity = 108/126 (85.71%), Postives = 117/126 (92.86%), Query Frame = 1 

Query: 74  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 133
           M +   VLAGLAFMFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLI
Sbjct: 1   MAMTIEVLAGLAFMFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLI 60

Query: 134 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 193
           SRDGGGWI AAKFLTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CTV+CFHR 
Sbjct: 61  SRDGGGWIDAAKFLTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRA 120

Query: 194 SLEDDW 200
           SL+DDW
Sbjct: 121 SLDDDW 126

[Close]
BLAST of Cp4.1LG10g03950 vs. TrEMBL
Match: Q9CAX4_ARATH (Putative uncharacterized protein F24K9.21 OS=Arabidopsis thaliana GN=F24K9.21 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.3e-55
Identity = 107/123 (86.99%), Postives = 116/123 (94.31%), Query Frame = 1 

Query: 77  ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRD 136
           I  +LAGLAFMFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRD
Sbjct: 12  IFQLLAGLAFMFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRD 71

Query: 137 GGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLE 196
           GGGWI AAKFLTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CTV+CFHR SL+
Sbjct: 72  GGGWIDAAKFLTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLD 131

Query: 197 DDW 200
           DDW
Sbjct: 132 DDW 134

[Close]
BLAST of Cp4.1LG10g03950 vs. TrEMBL
Match: D7LAP0_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_671966 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-54
Identity = 107/126 (84.92%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 74  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 133
           M +   VLAGLAFMFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFL 
Sbjct: 1   MAMTIEVLAGLAFMFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLT 60

Query: 134 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 193
           SRDGGGWI AAKFLTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CTV+CFHR 
Sbjct: 61  SRDGGGWIDAAKFLTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRA 120

Query: 194 SLEDDW 200
           SL+DDW
Sbjct: 121 SLDDDW 126

[Close]
BLAST of Cp4.1LG10g03950 vs. TAIR10
Match: AT3G11530.1 (AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 211.5 bits (537), Expect = 4.9e-55
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 1 

Query: 87  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 146
           MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKF
Sbjct: 1   MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query: 147 LTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 200
           LTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Sbjct: 61  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

[Close]
BLAST of Cp4.1LG10g03950 vs. TAIR10
Match: AT1G32410.1 (AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-28
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 140
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 141 IGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVL 189
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]
BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: gi|659125254|ref|XP_008462591.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 1.1e-67
Identity = 135/145 (93.10%), Postives = 135/145 (93.10%), Query Frame = 1 

Query: 55  LTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMY 114
           LTNV  L W V  AV  TWMDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMY
Sbjct: 2   LTNVLYLRWLVLLAVWCTWMDLIFAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMY 61

Query: 115 VLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMF 174
           VLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMF
Sbjct: 62  VLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMF 121

Query: 175 IEFVSFFIFVCTVLCFHRVSLEDDW 200
           IEFVSFFIFVCTVLCFHRVSLEDDW
Sbjct: 122 IEFVSFFIFVCTVLCFHRVSLEDDW 146

[Close]
BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: gi|700193075|gb|KGN48279.1| (hypothetical protein Csa_6G453780 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 6.6e-62
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 1 

Query: 74  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 133
           MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 1   MDLIFAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60

Query: 134 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 193
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120

Query: 194 SLEDDW 200
           SLEDDW
Sbjct: 121 SLEDDW 126

[Close]
BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: gi|659125256|ref|XP_008462592.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 2.4e-56
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 87  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 146
           MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF
Sbjct: 1   MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 60

Query: 147 LTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 200
           LTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Sbjct: 61  LTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 113

[Close]
BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: gi|1000944248|ref|XP_015581691.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Ricinus communis])

HSP 1 Score: 225.7 bits (574), Expect = 7.1e-56
Identity = 109/126 (86.51%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 74  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 133
           +  +S VLAGLAFMFSSSI+LQILACA+Y+NWWP+LSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 4   LTFLSPVLAGLAFMFSSSIILQILACAIYSNWWPMLSALMYVLVPMPCLFFGGGSTQFLI 63

Query: 134 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 193
           SRDGGGWIGAAKFLTGAS VGS+AIP+ILRHA MI+TGAM IEF SFFIFVCTVLCFHR 
Sbjct: 64  SRDGGGWIGAAKFLTGASAVGSIAIPVILRHAHMIETGAMLIEFTSFFIFVCTVLCFHRA 123

Query: 194 SLEDDW 200
           SLEDDW
Sbjct: 124 SLEDDW 129

[Close]
BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: gi|729352098|ref|XP_010543803.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 224.6 bits (571), Expect = 1.6e-55
Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 1 

Query: 77  ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRD 136
           + AVLAGLAFMFSSSILLQILACA+Y NWWP+LSALMYV+VPMPCLFFGGGSTQFLISRD
Sbjct: 7   LCAVLAGLAFMFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCLFFGGGSTQFLISRD 66

Query: 137 GGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLE 196
           GGGWI AAKFLTGASTVGS+AIPIILRHAQMI+TGAM IEF SFFIFVCTVLCFHR S++
Sbjct: 67  GGGWIDAAKFLTGASTVGSIAIPIILRHAQMIETGAMLIEFTSFFIFVCTVLCFHRASID 126

Query: 197 DDW 200
           DDW
Sbjct: 127 DDW 129

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g03950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VSP55_ARATH5.3e-2755.56Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana G... [more]
BLAST of Cp4.1LG10g03950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHI6_CUCSA4.6e-6298.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G453780 PE=4 SV=1[more]
V4S7C1_9ROSI2.5e-5591.60Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012797mg PE=4 SV=1[more]
Q93Z28_ARATH5.5e-5585.71AT3g11530/F24K9_21 OS=Arabidopsis thaliana PE=2 SV=1[more]
Q9CAX4_ARATH9.3e-5586.99Putative uncharacterized protein F24K9.21 OS=Arabidopsis thaliana GN=F24K9.21 PE... [more]
D7LAP0_ARALL2.1e-5484.92Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_671966 PE=4 ... [more]
BLAST of Cp4.1LG10g03950 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11530.14.9e-5588.50 Vacuolar protein sorting 55 (VPS55) family protein[more]
AT1G32410.13.0e-2855.56 Vacuolar protein sorting 55 (VPS55) family protein[more]
BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125254|ref|XP_008462591.1|1.1e-6793.10PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cu... [more]
gi|700193075|gb|KGN48279.1|6.6e-6298.41hypothetical protein Csa_6G453780 [Cucumis sativus][more]
gi|659125256|ref|XP_008462592.1|2.4e-5699.12PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cu... [more]
gi|1000944248|ref|XP_015581691.1|7.1e-5686.51PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Ri... [more]
gi|729352098|ref|XP_010543803.1|1.6e-5588.62PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Ta... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007262VPS55
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005773 vacuole
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g03950.1Cp4.1LG10g03950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007262Vacuolar protein sorting 55PANTHERPTHR12050LEPTIN RECEPTOR-RELATEDcoord: 69..199
score: 1.9
IPR007262Vacuolar protein sorting 55PFAMPF04133Vps55coord: 82..194
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g03950Cucsa.083550Cucumber (Gy14) v1cgycpeB0145
Cp4.1LG10g03950CmaCh03G011430Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g03950CmaCh07G008430Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g03950CmoCh07G008740Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g03950CmoCh03G011340Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g03950Cla018412Watermelon (97103) v1cpewmB078
Cp4.1LG10g03950Csa6G453780Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g03950MELO3C024562Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g03950ClCG04G010200Watermelon (Charleston Gray)cpewcgB071
Cp4.1LG10g03950CSPI06G25630Wild cucumber (PI 183967)cpecpiB081
Cp4.1LG10g03950Lsi01G012080Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g03950MELO3C024562.2Melon (DHL92) v3.6.1cpemedB090
Cp4.1LG10g03950CsaV3_6G040840Cucumber (Chinese Long) v3cpecucB0093
Cp4.1LG10g03950Bhi03G001407Wax gourdcpewgoB0101
Cp4.1LG10g03950CsGy6G025180Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g03950Carg05354Silver-seed gourdcarcpeB1128
Cp4.1LG10g03950Carg10492Silver-seed gourdcarcpeB0337
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g03950Cp4.1LG19g04880Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g03950Wax gourdcpewgoB0066
Cp4.1LG10g03950Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG10g03950Cucurbita pepo (Zucchini)cpecpeB106
Cp4.1LG10g03950Cucumber (Gy14) v1cgycpeB0638
Cp4.1LG10g03950Cucurbita maxima (Rimu)cmacpeB254
Cp4.1LG10g03950Cucurbita maxima (Rimu)cmacpeB807
Cp4.1LG10g03950Cucurbita moschata (Rifu)cmocpeB218
Cp4.1LG10g03950Cucurbita moschata (Rifu)cmocpeB761
Cp4.1LG10g03950Wild cucumber (PI 183967)cpecpiB059
Cp4.1LG10g03950Cucumber (Chinese Long) v2cpecuB063
Cp4.1LG10g03950Bottle gourd (USVL1VR-Ls)cpelsiB047
Cp4.1LG10g03950Bottle gourd (USVL1VR-Ls)cpelsiB062
Cp4.1LG10g03950Watermelon (Charleston Gray)cpewcgB057
Cp4.1LG10g03950Watermelon (Charleston Gray)cpewcgB067
Cp4.1LG10g03950Watermelon (97103) v1cpewmB064
Cp4.1LG10g03950Watermelon (97103) v1cpewmB092
Cp4.1LG10g03950Melon (DHL92) v3.5.1cpemeB054
Cp4.1LG10g03950Cucumber (Gy14) v2cgybcpeB290
Cp4.1LG10g03950Melon (DHL92) v3.6.1cpemedB071
Cp4.1LG10g03950Silver-seed gourdcarcpeB0348
Cp4.1LG10g03950Cucumber (Chinese Long) v3cpecucB0069