Cp4.1LG10g03600 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g03600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG10 : 1934560 .. 1934781 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATAAATTTGTTGAAAACTGTACCTAAAGTTCAGAGCTCCATTACTTCAAGACCTTCCACCTCTCTGTTCTTCACAACCAGAAGGCCCTTCTCCGTCCCCTTGTATTCCCCACTTGCGTTGGCTGTTTCTTCGATGTCTTACGAGAAGGAGCTCGCGGCTGCGAAGAAAGCGGCCTCTCTCGCTGCTCGTCTATGCCAGGCAATTCTCTCTTTCTAA

mRNA sequence

ATGGCTATAAATTTGTTGAAAACTGTACCTAAAGTTCAGAGCTCCATTACTTCAAGACCTTCCACCTCTCTGTTCTTCACAACCAGAAGGCCCTTCTCCGTCCCCTTGTATTCCCCACTTGCGTTGGCTGTTTCTTCGATGTCTTACGAGAAGGAGCTCGCGGCTGCGAAGAAAGCGGCCTCTCTCGCTGCTCGTCTATGCCAGGCAATTCTCTCTTTCTAA

Coding sequence (CDS)

ATGGCTATAAATTTGTTGAAAACTGTACCTAAAGTTCAGAGCTCCATTACTTCAAGACCTTCCACCTCTCTGTTCTTCACAACCAGAAGGCCCTTCTCCGTCCCCTTGTATTCCCCACTTGCGTTGGCTGTTTCTTCGATGTCTTACGAGAAGGAGCTCGCGGCTGCGAAGAAAGCGGCCTCTCTCGCTGCTCGTCTATGCCAGGCAATTCTCTCTTTCTAA

Protein sequence

MAINLLKTVPKVQSSITSRPSTSLFFTTRRPFSVPLYSPLALAVSSMSYEKELAAAKKAASLAARLCQAILSF

Homology

[Close]

BLAST of Cp4.1LG10g03600 vs. TrEMBL
Match: A0A0A0KKR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483280 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-19
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1  MAINLLKTVPKVQSSITSRPSTSLFFTTRRPFSVPLYSPLALAVSSMSYEKELAAAKKAA 60
          MAINLLKT PKVQ+SIT +PSTSLFFTTR  FS P Y P+ALAV SMSYEKELAAAKKAA
Sbjct: 1  MAINLLKTFPKVQTSITYKPSTSLFFTTRSSFSFPSYPPVALAVCSMSYEKELAAAKKAA 60

Query: 61 SLAARLCQAI 71
          SLAARLCQ +
Sbjct: 61 SLAARLCQNV 70

[Close]

BLAST of Cp4.1LG10g03600 vs. NCBI nr
Match: gi|659080936|ref|XP_008441059.1| (PREDICTED: SAL1 phosphatase-like [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MAINLLKTVPKVQSSITSRPSTSLFFTTRRPFSVPLYSPLALAVSSMSYEKELAAAKKAA 60
          MAINLLKT+PKVQ+SITS+PSTSL FTTR  FS P Y P+ALAV SMSYEKELAAAKKAA
Sbjct: 1  MAINLLKTLPKVQTSITSKPSTSLLFTTRSSFSFPSYRPVALAVCSMSYEKELAAAKKAA 60

Query: 61 SLAARLCQAI 71
          SLAARLCQ +
Sbjct: 61 SLAARLCQKV 70

[Close]

BLAST of Cp4.1LG10g03600 vs. NCBI nr
Match: gi|778717733|ref|XP_004148661.2| (PREDICTED: SAL1 phosphatase-like [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.7e-19
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1  MAINLLKTVPKVQSSITSRPSTSLFFTTRRPFSVPLYSPLALAVSSMSYEKELAAAKKAA 60
          MAINLLKT PKVQ+SIT +PSTSLFFTTR  FS P Y P+ALAV SMSYEKELAAAKKAA
Sbjct: 1  MAINLLKTFPKVQTSITYKPSTSLFFTTRSSFSFPSYPPVALAVCSMSYEKELAAAKKAA 60

Query: 61 SLAARLCQAI 71
          SLAARLCQ +
Sbjct: 61 SLAARLCQNV 70

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g03600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g03600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKR8_CUCSA	3.9e-19	81.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483280 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g03600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g03600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080936\|ref\|XP_008441059.1\|	2.5e-19	81.43	PREDICTED: SAL1 phosphatase-like [Cucumis melo]	[more]
gi\|778717733\|ref\|XP_004148661.2\|	5.7e-19	81.43	PREDICTED: SAL1 phosphatase-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046854	phosphatidylinositol phosphorylation
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0006790	sulfur compound metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008441	3'(2'),5'-bisphosphate nucleotidase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g03600.1	Cp4.1LG10g03600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g03600	CmaCh03G011010	Cucurbita maxima (Rimu)	cmacpeB656

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g03600	Melon (DHL92) v3.6.1	cpemedB092
Cp4.1LG10g03600	Silver-seed gourd	carcpeB0337
Cp4.1LG10g03600	Silver-seed gourd	carcpeB1128
Cp4.1LG10g03600	Cucumber (Chinese Long) v3	cpecucB0092
Cp4.1LG10g03600	Wax gourd	cpewgoB0087
Cp4.1LG10g03600	Cucurbita pepo (Zucchini)	cpecpeB076
Cp4.1LG10g03600	Cucumber (Gy14) v1	cgycpeB0211
Cp4.1LG10g03600	Cucurbita maxima (Rimu)	cmacpeB866
Cp4.1LG10g03600	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g03600	Cucurbita moschata (Rifu)	cmocpeB806
Cp4.1LG10g03600	Wild cucumber (PI 183967)	cpecpiB080
Cp4.1LG10g03600	Cucumber (Chinese Long) v2	cpecuB085
Cp4.1LG10g03600	Bottle gourd (USVL1VR-Ls)	cpelsiB054
Cp4.1LG10g03600	Watermelon (Charleston Gray)	cpewcgB061
Cp4.1LG10g03600	Watermelon (97103) v1	cpewmB075
Cp4.1LG10g03600	Melon (DHL92) v3.5.1	cpemeB069
Cp4.1LG10g03600	Cucumber (Gy14) v2	cgybcpeB710