Cp4.1LG10g03380 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g03380
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 2157881 .. 2159091 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCATGGCGGATCCAGAGGACACCAGGTCTTCGGAGATGTTGTTTTTGGGTTTCAGTAGCGAGATGGAGATGTCGGCCATGGTTTCGGCTCTGACCCACGTTGTCGCCGGAGATGTGCCGGACAGAGATGCTTATTATGATTCCGCCTGGACCTCCTCCTCTGTTTCTGCTTCTGCTGTAGCATCCGCCCCTTATGGCGGTGGTGGACATAAGAGAGGCCGAACGCTGGCGCAGGAAGACGGTGGCTCTGTTTCAACGTGGTCGCAATCCTCTGTAATTTCAGGTGAGCTTTTTGGTTGCTGTTAAGTAATACAAAATGCTGAAGGATTTTAAATTTTTTTGTTGTTTGCAAATAAAAAGAAAGAAATTTTTGTGGGTAAAATTGAGTTTTTCAAATCATTTTGGTTTCAGGATTAAGAAACAGAGGAATTCAGTGAATCCCTTTAAATCAGAGAATTATTCGCTGTTATTGAATAAATTATCATTGTTTTTCAGGAGATTCAAGCAATGGAGTGATCATAAGGCCACAAACAGGGTCGTTGGAGATGGAAAATTCGGTCTATGAATACGGCGGAGAGATTCCAATCACGGCAGAGCAACCACCGGCGAGAAGAAAATACAGGGGCGTAAGACAGAGGCCATGGGGTAAATGGGCGGCCGAGATCCGAGACCCGTATAAGGCGACGAGAGTTTGGTTAGGTACGTTCGACACGGCGGAATCCGCCGCACGGGCATACGACGAAGCTGCGCTCCGATTCCGAGGCAGTAAAGCTAAACTCAACTTCCCGGAAAATGTCCGCCTCCGACAGCTTCCGGCTACCCATTTCAGCAATTCCAATTCTACGAACACCCTTTTGGCAATTCCAACAAATTCCGAATCGATTGTCCATTCTCAGCCAATTCTTAACTTGCAGAGCTCTTCCAATGCTTCGCCGGTGAACTTCGTCAATTTCTCCAACGGTCAATTGCAGCCTCCGATCGACACATACAGTGAAATTAACTTCTCATCTTCTTCTTCAATGGCTTCTCCCTTTCACTCTTCAACCGCCGGACTGTCGAATTCTCAATTTTCGTCGTCGCCATCATCTTCGCCGGGGGTTTCTCTTTCCTTTCCGCCTCAGTCCGTCTCCGGTCGCCGGAGCAGCGACGATGAGCCTTATCCGACTTCAGATTGGTCTGAATTTTTCAATCACGCCGCTTCGTCGGGATGA

mRNA sequence

TGCATGGCGGATCCAGAGGACACCAGGTCTTCGGAGATGTTGTTTTTGGGTTTCAGTAGCGAGATGGAGATGTCGGCCATGGTTTCGGCTCTGACCCACGTTGTCGCCGGAGATGTGCCGGACAGAGATGCTTATTATGATTCCGCCTGGACCTCCTCCTCTGTTTCTGCTTCTGCTGTAGCATCCGCCCCTTATGGCGGTGGTGGACATAAGAGAGGCCGAACGCTGGCGCAGGAAGACGGTGGCTCTGTTTCAACGTGGTCGCAATCCTCTGTAATTTCAGGAGATTCAAGCAATGGAGTGATCATAAGGCCACAAACAGGGTCGTTGGAGATGGAAAATTCGAGCTCTTCCAATGCTTCGCCGGTGAACTTCGTCAATTTCTCCAACGGTCAATTGCAGCCTCCGATCGACACATACAGTGAAATTAACTTCTCATCTTCTTCTTCAATGGCTTCTCCCTTTCACTCTTCAACCGCCGGACTGTCGAATTCTCAATTTTCGTCGTCGCCATCATCTTCGCCGGGGGTTTCTCTTTCCTTTCCGCCTCAGTCCGTCTCCGGTCGCCGGAGCAGCGACGATGAGCCTTATCCGACTTCAGATTGGTCTGAATTTTTCAATCACGCCGCTTCGTCGGGATGA

Coding sequence (CDS)

ATGGCGGATCCAGAGGACACCAGGTCTTCGGAGATGTTGTTTTTGGGTTTCAGTAGCGAGATGGAGATGTCGGCCATGGTTTCGGCTCTGACCCACGTTGTCGCCGGAGATGTGCCGGACAGAGATGCTTATTATGATTCCGCCTGGACCTCCTCCTCTGTTTCTGCTTCTGCTGTAGCATCCGCCCCTTATGGCGGTGGTGGACATAAGAGAGGCCGAACGCTGGCGCAGGAAGACGGTGGCTCTGTTTCAACGTGGTCGCAATCCTCTGTAATTTCAGGAGATTCAAGCAATGGAGTGATCATAAGGCCACAAACAGGGTCGTTGGAGATGGAAAATTCGAGCTCTTCCAATGCTTCGCCGGTGAACTTCGTCAATTTCTCCAACGGTCAATTGCAGCCTCCGATCGACACATACAGTGAAATTAACTTCTCATCTTCTTCTTCAATGGCTTCTCCCTTTCACTCTTCAACCGCCGGACTGTCGAATTCTCAATTTTCGTCGTCGCCATCATCTTCGCCGGGGGTTTCTCTTTCCTTTCCGCCTCAGTCCGTCTCCGGTCGCCGGAGCAGCGACGATGAGCCTTATCCGACTTCAGATTGGTCTGAATTTTTCAATCACGCCGCTTCGTCGGGATGA

Protein sequence

MADPEDTRSSEMLFLGFSSEMEMSAMVSALTHVVAGDVPDRDAYYDSAWTSSSVSASAVASAPYGGGGHKRGRTLAQEDGGSVSTWSQSSVISGDSSNGVIIRPQTGSLEMENSSSSNASPVNFVNFSNGQLQPPIDTYSEINFSSSSSMASPFHSSTAGLSNSQFSSSPSSSPGVSLSFPPQSVSGRRSSDDEPYPTSDWSEFFNHAASSG
Homology
[Close]
BLAST of Cp4.1LG10g03380 vs. TrEMBL
Match: A0A0A0KKX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486790 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 90/114 (78.95%), Postives = 97/114 (85.09%), Query Frame = 1 

Query: 1   MADPEDTRSSEMLFLGFSSEMEMSAMVSALTHVVAGDVPDRDAYYDSAWTSSSVSASAVA 60
           MADPED ++SEM FL FS EMEMSAMVSALTHVVAGD PDRDA YDS WTSSSVSA A  
Sbjct: 1   MADPEDNKASEM-FLNFSREMEMSAMVSALTHVVAGDTPDRDASYDSTWTSSSVSAPAET 60

Query: 61  SAPYGGGGHKRGRTLAQEDGGSVSTWSQSSVISGDSSNGVIIRPQTGSLEMENS 115
           SA +GGGG+KRGRTLA E+GGSVS WS SSVISG+SSN VIIRPQTGS  +ENS
Sbjct: 61  SALHGGGGYKRGRTLALENGGSVSAWSPSSVISGNSSNVVIIRPQTGSATVENS 113

[Close]
BLAST of Cp4.1LG10g03380 vs. NCBI nr
Match: gi|449448584|ref|XP_004142046.1| (PREDICTED: ethylene-responsive transcription factor ABR1 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 90/114 (78.95%), Postives = 97/114 (85.09%), Query Frame = 1 

Query: 1   MADPEDTRSSEMLFLGFSSEMEMSAMVSALTHVVAGDVPDRDAYYDSAWTSSSVSASAVA 60
           MADPED ++SEM FL FS EMEMSAMVSALTHVVAGD PDRDA YDS WTSSSVSA A  
Sbjct: 1   MADPEDNKASEM-FLNFSREMEMSAMVSALTHVVAGDTPDRDASYDSTWTSSSVSAPAET 60

Query: 61  SAPYGGGGHKRGRTLAQEDGGSVSTWSQSSVISGDSSNGVIIRPQTGSLEMENS 115
           SA +GGGG+KRGRTLA E+GGSVS WS SSVISG+SSN VIIRPQTGS  +ENS
Sbjct: 61  SALHGGGGYKRGRTLALENGGSVSAWSPSSVISGNSSNVVIIRPQTGSATVENS 113

[Close]
BLAST of Cp4.1LG10g03380 vs. NCBI nr
Match: gi|659080792|ref|XP_008440983.1| (PREDICTED: ethylene-responsive transcription factor ABR1 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 5.1e-36
Identity = 88/114 (77.19%), Postives = 96/114 (84.21%), Query Frame = 1 

Query: 1   MADPEDTRSSEMLFLGFSSEMEMSAMVSALTHVVAGDVPDRDAYYDSAWTSSSVSASAVA 60
           MADPED ++SEM FL FS EMEMSAMVSALTHVVAGDVPDRDA YDS WTSSSVSA A  
Sbjct: 1   MADPEDNKASEM-FLNFSREMEMSAMVSALTHVVAGDVPDRDACYDSTWTSSSVSAPAEP 60

Query: 61  SAPYGGGGHKRGRTLAQEDGGSVSTWSQSSVISGDSSNGVIIRPQTGSLEMENS 115
           S  +GGGG+KRGRTLA EDGGSVSTW  S+ ISGDSSN VI+RPQ+GS  +ENS
Sbjct: 61  SNLHGGGGYKRGRTLALEDGGSVSTWPSSAAISGDSSNVVIVRPQSGSATVENS 113

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g03380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g03380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKX4_CUCSA1.2e-3678.95Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486790 PE=4 SV=1[more]
BLAST of Cp4.1LG10g03380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g03380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448584|ref|XP_004142046.1|1.7e-3678.95PREDICTED: ethylene-responsive transcription factor ABR1 [Cucumis sativus][more]
gi|659080792|ref|XP_008440983.1|5.1e-3677.19PREDICTED: ethylene-responsive transcription factor ABR1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g03380.1Cp4.1LG10g03380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g03380Cucsa.101370Cucumber (Gy14) v1cgycpeB0211
Cp4.1LG10g03380CmaCh03G010600Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g03380CmoCh03G010570Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g03380Cla008472Watermelon (97103) v1cpewmB075
Cp4.1LG10g03380Csa6G486790Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g03380MELO3C008014Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g03380ClCG01G015830Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g03380CSPI06G26960Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g03380Lsi01G011130Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g03380MELO3C008014.2Melon (DHL92) v3.6.1cpemedB092
Cp4.1LG10g03380CsaV3_6G042110Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g03380Bhi03G001088Wax gourdcpewgoB0087
Cp4.1LG10g03380CsGy6G026330Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g03380Carg10567Silver-seed gourdcarcpeB0337
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g03380Wax gourdcpewgoB0083
Cp4.1LG10g03380Cucurbita pepo (Zucchini)cpecpeB068
Cp4.1LG10g03380Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g03380Cucurbita pepo (Zucchini)cpecpeB098
Cp4.1LG10g03380Cucumber (Gy14) v1cgycpeB0663
Cp4.1LG10g03380Cucurbita maxima (Rimu)cmacpeB027
Cp4.1LG10g03380Cucurbita maxima (Rimu)cmacpeB599
Cp4.1LG10g03380Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g03380Cucurbita moschata (Rifu)cmocpeB547
Cp4.1LG10g03380Cucurbita moschata (Rifu)cmocpeB548
Cp4.1LG10g03380Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g03380Wild cucumber (PI 183967)cpecpiB057
Cp4.1LG10g03380Watermelon (Charleston Gray)cpewcgB066
Cp4.1LG10g03380Watermelon (Charleston Gray)cpewcgB083
Cp4.1LG10g03380Watermelon (97103) v1cpewmB093
Cp4.1LG10g03380Cucumber (Gy14) v2cgybcpeB156
Cp4.1LG10g03380Silver-seed gourdcarcpeB1128
Cp4.1LG10g03380Silver-seed gourdcarcpeB1470
Cp4.1LG10g03380Silver-seed gourdcarcpeB1471