Cp4.1LG10g00930 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g00930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionU1 small nuclear ribonucleoprotein 70 kDa, putative
LocationCp4.1LG10 : 3525186 .. 3529995 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGTCCTTGCAGAGTAAGTGTATAAATACCCTCGATATAACCTTACAGCTTTTTTCCGCCTCTTCCAGTTCCCTCCGTTTCGACCCGACCGTACTAACTAGATCCCGAGCAAAAAACACTCGCCAATGTTCTCCGTCCACTCCCTTTGATTTCTGATATCAATTATTTGTAATCGTATTAGTCTGAGCAACCAACGTGTGCTGCCATGGGAGACTACGATGATGCCTTCATGCGGAATCCCAACGCGGCGGTTCAGACTCGTACCAAGGCCCAGAATCGTGCCAATGTCCTTCAACTCAAACTGGTACGTGGAAGGCTTTCGACTATTATCATCATTTCTTTTGAAGCCTTCGATTGTTCTTTTTTTTGTTTGATTGAAGTTAGCTAGGGTTTCAAGAAGTTGTTTCGCAGTTTGTTAATTAGAAAAGATACAGAATTTGTTGTTGTGTCGGAAAACTATGCATAGATGTTGTCGTTATAGTTATTGCGTATTCATAATGATTGATTTTCGTTTTTTTTTTTTTTTGTTTAGAGATGATAAATTAAGTTCTACGTTGAATTCTCATAGATCGCTAACGACGTATTGTCAATGAAATGTCTCGTGTCTTGTTAAAAGAGAAAAAGACTACATCTAGTCGACAGCAGCATGGTGTGATACGATGACTTAATATTATCATCGGGGGTCGAAATTTCAGATTATGGTTTTCAAAGAAGCTGATGTGTTTTTAGAACATTCGACTATGGAATGTCTAGGGTTCTTAATTTTCCTTCTCGTGCAGATTGGACAGAGTCATCCCACTGGTCTTACGACCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAATTCAAACCTCCACCGGAAAAAAGAAAATGTCCACCATTAACAGGTTTTTAGTACTTTTCAAAACTTGCATGGTATTTATTAATTTTTTTTATGTAGTTTTTTCCTTACTATTTTTGCCGAGGGATGTAATTTTATCGCATTTCGTGTTGAAGGGATGGCGCAGTTTGTGAGTAATTTTGCTGAACCTGATGATCCAGAATATTCTCCCCCTGTTCTAAAGGGTGAAACTCCGGTAAGATAATTTACTTCTTAATGACTGTGTGAACTAGCTTCCCCAATCCTTTTAAGATTGAATATTGAATCTCGTTCCCTCCCAAAAATGTATATGTTTTGAATACATGTATGTATTGTAAGGAAAGTGAGTATTGCTAATAGTTTTAACTTAGAGGCTGTTTGGCAGCTTGTGATGCAATATGGTTTGCTTTAAACACAATTTTCGGGATTTAAATTAGGTTGCTTGTAAGTTTTAAGGTTAGTGTATAACAATTCATTTGCCCATGATTTTTTTAGTAAGCGATGCTTTGATTTCTTTTAAACAACAGCAACATCAAATAAATACGTTTTAACTGAACTTGTGTTACTAAAATACAGGAAAATTCTTTAAAAAGAACTTAGGTGCAGCCTCTTATTTAGTGTGGTATCTCTGTCGATTATTTTAGCACATTTGTAGTAAAAGTTTTTATCATTTCAAATAAAGTGATCTTAATTAGTTTCTGAAGACTGGATTTTCAAAATGATGGTTTATCGTGTATACTTCTATGAGAATTATGGCGTAACTACTTAAGAATCTGATTAATCTGAAACTGAAACTTTTCAGGCACAAAGGAGGGCTAGAATTCACTTGCTAAGAATTGAAAAGGGTGCGAAGAAAGCTGTTGAGGAGCTGCCAAAATGTGATACATCTCTTCAGTACTTACCCTTAATTTGTAGGTAAAAAATTTGAATGTCGTGTCTTACATATGTACTTATGTGCAGATCTTGAACGTGACGATCCAAATGTAACTGGTGATCCATACAAAACGCTCTTTGTGGCTAGACTGGTGTGTAAAATGTAGTGTACATAATTCTTTAATTTAAGCTTAATGTTACACTGAAAATCATTGTTACCCATTGGCAGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGTAGGTATTTGAGCATCCTCATGGGGCGCTCGGTAAGAGGTTAATATTTTTGTGGTCAATTATATACTTTATTTTACTATGAGAAATATTTTTTGGGTACTTGTCATGTTTTTGGTCCATTTTTCTGAAAATTTTACTAGAATCTATTCCATTCTAAATCACTATGGGTTGGTTTAGTAGTATGTCTAAGCATGGATTTGCATGTGTGGTTTCAGTTAATAGGTCTTCTTGTATTGTTTTTCGTTGTAGTGACAATTAAATAGTTCATGCTTTCTCTTTGAATAACCCATCAGAAATATTCCACTGGCCTTCCAAACTATGTATTAACATGCGAAACAGATCTCTTACTTTTTATTTTTTATTTTTCCCTTCAACTTTCTCCCCATTTAAAGTTTTCAAATTTCTGGGTAAGTTTTTTTGGGGGTAAAGCATATTTCCATCTGTCTGGATCCTTACGGTGGAAATAAGTTTGAATAACGATTAACGCCAAACACCTCCTGGATTCATCGTTGGTTATTCAAGCTCCTAATAGTCTCTCAGGTAAAGCTGCTGGTATGCAGTCATCAATTTGATGTGTATTTCATTTTCCTCTTAGTGATCGTGTCTTTGCCCGGATGTAGTTGGGTTAGTTAATTCTTGAGGCATGATGTTAATTGGAAACTCCTTAGTAAAATTCTATACATCAAGAATTCCTGGCAAGGAGGCAGGTATTCTACATTCAGCCAAATGTTATTCATGATTTTGGTATTTCTATGGCTCTGACCTGAAAGATGGTGGGCTTCACCATGCATGACAAAGCTGAAAATTTTAGGTTGGGCAGTGGAGTGATGTACTTTGCCTTTTGGCCTTTATATTCAAGCAACAATGGAGATTGTCAACTTATTATTCTGCCTTGGGTAAAATACATGGGAGTATTAGCATCTCTTTCTCCTTTGAATTTTGTACTGCATAGATTTTCTGCTGCTAAAAGTTGTACCTTTGGTTTTAAAGGCATCAAAAAATCTCATCGTTGAGAAGATTTCCTGGTATTTCCTGGTATTTCCTATATTACATATACCTTTTTCATTATTTGAAAAATAATTCCCTGGTAAGGGGAGTTTATTATGTTCGACAACTGGTAAAATGGTCACAAATACATCAGTTTTTCCTGACTCTAGCTGGTGATGATGCATCTCGCAATGGAAGCTCTATGATTTAAAGGTGAGCACGGCTAATTAGGCATAGTGCCTGTCTGCCGTGCCAATAGGATTTGCTTATATAATAAACTTTCTTACAGTATTTCTCTGGCTATAAATTCATAAAATCTTCATCGAGAATGTGTAATGGAAAGAGATTTGAACTTCTCTTCTGCAATATGACTTTTTTGTTTGTGCAAATATTCTGTGTTTTGCAGGCCCGATTGATTACGGACAAAGTGACAGGTAAACCTAAAGGCTACGCATTCATTGAGTACATGCACAAAAGAGATATGAAAGGTTTGTTTCAATTAATTTGTATTTTTAACCCTTCTATTCGATTAATGATTAGTTCCTTCATTTGGAGATAATTAATTTACTCACCTCCATTTGAAACTACTCAGCTGCATATAAGCAAGCTGATGGTAGAAAGATTGATGGTAGAAGGGTACTTGTGGACGTCGAGCGAGGTAGAACAGTACCGAATTGGCGTCCTCGATGGCTGGGTGGCGGTCTTGGAACTACCAGAGTGGGAGGCGAAGATAATAACCAGAAGCAGTCTGGAAGGTAATTAATATGATGTCGACAACTCCTGCTCTTACTAGTGCAAGGCATTGAGAAATATTGATGATTATTGTACTATAAAACAATAATGAATGATTCTCGATCCAGTGTTTTTATCTTGCGAAGTCTTAATTTTTTGTGATCACTGAAAATTTATAAAGATTATATACGCTGAAAGCATCTGTGTAACTTGTACAGGGAGCAACAGCAGTCTGGTGCACCATCTCGATCAGAGGAGCCTAGGGCTCGTGAAGATCGCATTGGAGAGCGGTATGATGTTCCATATGTTCTTTTCATTTTAGAAATTTTTGTGCCAATACATATGTGCTTCTTTCAAATAATGGTTTCAGCATTTGAATGGAACTTCAGTTTATTGTTAATTTTAGATTCTGCGTAATTAGGCTTCGATTTAATATTTTCAGAGATAGGGAAAAGTCTTATGAGAAGGGAAGAGACAGAGAAAGAGAGAGAGAGAAGTCTCATGAACGTTCCCGTGAGAGATCTAAGGATCGTGATGTCAAAGAAGATAGGCATCACAGAGATCGTGATAGGACTAGAGATAGAGATCGGGACAGAGAAAGGGACAAAGAGAGAGATCGTGGCCATGACCGCGATAGAACACGTGATCGTGATCGTGATCGAGGAAGGGATCGAGGCCGTGACTATGAGCGTGATAGAGGTCGTGATCGGGATCGTCATCGCGACAGAGATAGGGAGAGGGATCGGGATCTTGAAGGGGGATTTCCAGACCCTGATCGTGGTCGCTCCCATGATAGGGAATCTGATTTTAATCGGGAATCAAAATATGAAAAGGATAGACATGGTGATAGGGACAGAGATATTGATCGTGCTGAAACAGAAGATGGTCATGGGTGGTATGATCAGCCTGAGTATGGGCATCGACACCCAGATAATGATCCCGATCACCAAAACTACGATCACTTTGAACATAACCGTAGTCGGGGACAATATGATCACCCAGAAGACCATCGTAACCAAGATCGTTATGATCAGAATGATAGAATGGAGGATGATTAA

mRNA sequence

GGGAGTCCTTGCAGAGTAAGTGTATAAATACCCTCGATATAACCTTACAGCTTTTTTCCGCCTCTTCCAGTTCCCTCCGTTTCGACCCGACCGTACTAACTAGATCCCGAGCAAAAAACACTCGCCAATGTTCTCCGTCCACTCCCTTTGATTTCTGATATCAATTATTTGTAATCGTATTAGTCTGAGCAACCAACGTGTGCTGCCATGGGAGACTACGATGATGCCTTCATGCGGAATCCCAACGCGGCGGTTCAGACTCGTACCAAGGCCCAGAATCGTGCCAATGTCCTTCAACTCAAACTGATTGGACAGAGTCATCCCACTGGTCTTACGACCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAATTCAAACCTCCACCGGAAAAAAGAAAATGTCCACCATTAACAGGGATGGCGCAGTTTGTGAGTAATTTTGCTGAACCTGATGATCCAGAATATTCTCCCCCTGTTCTAAAGGGTGAAACTCCGGCACAAAGGAGGGCTAGAATTCACTTGCTAAGAATTGAAAAGGGTGCGAAGAAAGCTGTTGAGGAGCTGCCAAAATATCTTGAACGTGACGATCCAAATGTAACTGGTGATCCATACAAAACGCTCTTTGTGGCTAGACTGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGCCCGATTGATTACGGACAAAGTGACAGGTAAACCTAAAGGCTACGCATTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCATATAAGCAAGCTGATGGTAGAAAGATTGATGGTAGAAGGGTACTTGTGGACGTCGAGCGAGGTAGAACAGTACCGAATTGGCGTCCTCGATGGCTGGGTGGCGGTCTTGGAACTACCAGAGTGGGAGGCGAAGATAATAACCAGAAGCAGTCTGGAAGGGAGCAACAGCAGTCTGGTGCACCATCTCGATCAGAGGAGCCTAGGGCTCGTGAAGATCGCATTGGAGAGCGATTCTGCGTAATTAGGCTTCGATTTAATATTTTCAGAGATAGGGAAAAGTCTTATGAGAAGGGAAGAGACAGAGAAAGAGAGAGAGAGAAGTCTCATGAACGTTCCCGTGAGAGATCTAAGGATCGTGATGTCAAAGAAGATAGGCATCACAGAGATCGTGATAGGACTAGAGATAGAGATCGGGACAGAGAAAGGGACAAAGAGAGAGATCGTGGCCATGACCGCGATAGAACACGTGATCGTGATCGTGATCGAGGAAGGGATCGAGGCCGTGACTATGAGCGTGATAGAGGTCGTGATCGGGATCGTCATCGCGACAGAGATAGGGAGAGGGATCGGGATCTTGAAGGGGGATTTCCAGACCCTGATCGTGGTCGCTCCCATGATAGGGAATCTGATTTTAATCGGGAATCAAAATATGAAAAGGATAGACATGGTGATAGGGACAGAGATATTGATCGTGCTGAAACAGAAGATGGTCATGGGTGGTATGATCAGCCTGAGTATGGGCATCGACACCCAGATAATGATCCCGATCACCAAAACTACGATCACTTTGAACATAACCGTAGTCGGGGACAATATGATCACCCAGAAGACCATCGTAACCAAGATCGTTATGATCAGAATGATAGAATGGAGGATGATTAA

Coding sequence (CDS)

ATGGGAGACTACGATGATGCCTTCATGCGGAATCCCAACGCGGCGGTTCAGACTCGTACCAAGGCCCAGAATCGTGCCAATGTCCTTCAACTCAAACTGATTGGACAGAGTCATCCCACTGGTCTTACGACCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAATTCAAACCTCCACCGGAAAAAAGAAAATGTCCACCATTAACAGGGATGGCGCAGTTTGTGAGTAATTTTGCTGAACCTGATGATCCAGAATATTCTCCCCCTGTTCTAAAGGGTGAAACTCCGGCACAAAGGAGGGCTAGAATTCACTTGCTAAGAATTGAAAAGGGTGCGAAGAAAGCTGTTGAGGAGCTGCCAAAATATCTTGAACGTGACGATCCAAATGTAACTGGTGATCCATACAAAACGCTCTTTGTGGCTAGACTGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGCCCGATTGATTACGGACAAAGTGACAGGTAAACCTAAAGGCTACGCATTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCATATAAGCAAGCTGATGGTAGAAAGATTGATGGTAGAAGGGTACTTGTGGACGTCGAGCGAGGTAGAACAGTACCGAATTGGCGTCCTCGATGGCTGGGTGGCGGTCTTGGAACTACCAGAGTGGGAGGCGAAGATAATAACCAGAAGCAGTCTGGAAGGGAGCAACAGCAGTCTGGTGCACCATCTCGATCAGAGGAGCCTAGGGCTCGTGAAGATCGCATTGGAGAGCGATTCTGCGTAATTAGGCTTCGATTTAATATTTTCAGAGATAGGGAAAAGTCTTATGAGAAGGGAAGAGACAGAGAAAGAGAGAGAGAGAAGTCTCATGAACGTTCCCGTGAGAGATCTAAGGATCGTGATGTCAAAGAAGATAGGCATCACAGAGATCGTGATAGGACTAGAGATAGAGATCGGGACAGAGAAAGGGACAAAGAGAGAGATCGTGGCCATGACCGCGATAGAACACGTGATCGTGATCGTGATCGAGGAAGGGATCGAGGCCGTGACTATGAGCGTGATAGAGGTCGTGATCGGGATCGTCATCGCGACAGAGATAGGGAGAGGGATCGGGATCTTGAAGGGGGATTTCCAGACCCTGATCGTGGTCGCTCCCATGATAGGGAATCTGATTTTAATCGGGAATCAAAATATGAAAAGGATAGACATGGTGATAGGGACAGAGATATTGATCGTGCTGAAACAGAAGATGGTCATGGGTGGTATGATCAGCCTGAGTATGGGCATCGACACCCAGATAATGATCCCGATCACCAAAACTACGATCACTTTGAACATAACCGTAGTCGGGGACAATATGATCACCCAGAAGACCATCGTAACCAAGATCGTTATGATCAGAATGATAGAATGGAGGATGATTAA

Protein sequence

MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKPPPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGEDNNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDREREREKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRDRGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDRHGDRDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDRYDQNDRMEDD
Homology
[Close]
BLAST of Cp4.1LG10g00930 vs. Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 9.3e-126
Identity = 285/469 (60.77%), Postives = 334/469 (71.22%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGD  D F+RNPNAAVQ R K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQFVSNFAEP DPEY+PP  + E P+Q+R RIH LR+EKG +KA E+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKREFESYGPIKR  L+TD++T KPKG
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMKAAYKQADG+KIDGRRVLVDVERGRTVPNWRPR LGGGLGT+RVGG +
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEP-RAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERE 300
               +   EQQ  G  S+SEEP R RE                  +REKS EKG++RER 
Sbjct: 241 ----EIVGEQQPQGRTSQSEEPSRPRE------------------EREKSREKGKERERS 300

Query: 301 REKSHERSRERSKDRDVKEDRHHRDRD---RTRDRDRDRERDKERDRGHDRDRTRDRDRD 360
           RE SHE+ RERS+DR  +ED+HHRDRD   R RDRD  R+RD+ RDRG DRDR   RDRD
Sbjct: 301 RELSHEQPRERSRDRP-REDKHHRDRDQGGRDRDRDSRRDRDRTRDRG-DRDR---RDRD 360

Query: 361 RGRDRGRDYERDRGRDRDRHRDRDRERDRDLEGG-FPDPDRGRSHDRESDFNRESKYEKD 420
           RGRDR           RD  RDR R+++RD EGG +     GRS +R++++  E +  + 
Sbjct: 361 RGRDR---------TSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERDAEYRGEPEETRG 418

Query: 421 RHGDRDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSR 465
            + D   D DR              Y HR+   + D   Y+  E+ RS+
Sbjct: 421 YYEDDQGDTDR--------------YSHRYDKMEEDDFRYER-EYKRSK 418

[Close]
BLAST of Cp4.1LG10g00930 vs. Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.0e-63
Identity = 188/436 (43.12%), Postives = 251/436 (57.57%), Query Frame = 1 

Query: 42  LTTNLLKLFEPRPPLEFKPP-----PEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGE 101
           L  NLL LF PR P+ + PP      EK    P  G+A ++  F +P D   +PP  + E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRRARIHLLRIEKGAKKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    +IE+  +    EL  +   +D N  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRARLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERG 221
           EFE YGPIKR  ++ +K +GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRWLGGGLGTTRVGGEDNNQKQSGRE---------QQQSGAPSRSEEPRARED 281
           RTV  WRPR LGGGLG TR GG D N + SGR+         + +     R E  R R+ 
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRERERDRRERSRERDK 244

Query: 282 RIGERFCVIRLRFNIFRDREK-----SYEKGRDREREREKSHERSRERSKDRDVKEDRHH 341
               R    R R    R REK     S E+ RD++++++K  ++ +++ KDRD K  R  
Sbjct: 245 ERERRRSRSRERRRRSRSREKEERKRSRERSRDKDKDKDKDKDKEKDKDKDRDRK--RRS 304

Query: 342 RDRDRTRDRDRDRERDKERDRGH-------------------------DRDRTRDRDRDR 401
           R R+R R+RDRDRE+ ++R  G                               ++RDRDR
Sbjct: 305 RSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQTGDLGIDGIELKQEPEEKNRDRDR 364

Query: 402 GRDRGRDYERDRGRDRDRHRD-RDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDR 433
            RDR +D ++DR RDRDR R  RDRERD+D E    D DR R  DR+ D +R+ K E+DR
Sbjct: 365 ERDREKDRDKDRDRDRDRRRSHRDRERDKDRE---RDRDRRRDRDRDRDRDRDHKRERDR 424

[Close]
BLAST of Cp4.1LG10g00930 vs. Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.9e-58
Identity = 184/437 (42.11%), Postives = 249/437 (56.98%), Query Frame = 1 

Query: 42  LTTNLLKLFEPRPPLEFKPP-----PEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGE 101
           L  NLL LF PR P+ + PP      EK    P  G+A ++  F +P D   +PP  + E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRRARIHLLRIEKGAKKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    +IE+  +    EL  +   +D N  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRARLITDKVT---GKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 221
           EFE YGPIKR  ++ +K +   GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDV
Sbjct: 125 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 184

Query: 222 ERGRTVPNWRPRWLGGGLGTTRVGGEDNNQKQSGREQ--------------QQSGAPSRS 281
           ERGRTV  WRPR LGGGLG TR GG D N + SGR+               ++  +  R 
Sbjct: 185 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRERERDRRERSRERE 244

Query: 282 EEPRARE-DRIGERFCVIRLRFNIFRDREKSYEKGRDRERE----------REKSHERSR 341
           +EPR R   R  ER    R R    R R +   K +D+E++          R +S ER R
Sbjct: 245 KEPRERRRSRSRERRRKSRSREKEERKRTREKSKDKDKEKDKDNKDRDRKRRSRSRERKR 304

Query: 342 ERSKDRDVKEDRHHRDRDRTRDRDRDRE------------RDKERDRGHDRDRTRDRDRD 401
           ER +DR+ KE+R   +     D  +D              + +  ++  +RDR RDRDR+
Sbjct: 305 ERDRDREKKEERVEAEVPEADDAPQDDAQIGDLGIDGIELKQEPEEKSRERDRERDRDRE 364

Query: 402 RGRDRGRDYERDRGRDRDR-HRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKD 433
           +G ++ RD +RDR RDR R HRDRDRE+DRD      D DR R  DR+ + +++ K E+D
Sbjct: 365 KG-EKDRDKDRDRDRDRRRSHRDRDREKDRD-----RDRDRRRDRDRDRERDKDHKRERD 424

[Close]
BLAST of Cp4.1LG10g00930 vs. Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-55
Identity = 190/448 (42.41%), Postives = 241/448 (53.79%), Query Frame = 1 

Query: 42  LTTNLLKLFEPRPPLEFKPP-----PEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGE 101
           L  NLL LF PR P+ + PP      EK    P  G+A ++  F +P D   +PP  + E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRRARIHLLRIEKGAKKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    +IE+  ++   EL  +   +DPN  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRARLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERG 221
           EFE YGPIKR  ++  K +GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRWLGGGLGTTRVGGEDNNQKQSGREQ--QQSGAPSRSEEPRAREDRIGERFC 281
           RTV  WRPR LGGGLG TR GG D N + SGR+   +    P  S  P    DR  ER  
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 VIRLRFNIFRDREKSYEKGRDRERER------EKSHERSRERSKDRDVKEDRHHRDRDRT 341
             R R    RD+E+   + R R+R R      ++   RSRERSKD+D       RDR R 
Sbjct: 245 RERSRE---RDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKD-------RDRKRR 304

Query: 342 RDRDRDRERDKERDR---------------------------------GHDRDRTRDRDR 401
             R R+R R +ER+R                                 G D    + RDR
Sbjct: 305 SSRSRERAR-RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDR 364

Query: 402 DRGRDRGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKD 444
           DR R R    ER+R RDRDR RDRDRE  R   G     +RGR   R     +++  E  
Sbjct: 365 DRERRRSHRSERERRRDRDRDRDRDREHKRGERGS----ERGRDEARGGGGGQDNGLEGL 424

[Close]
BLAST of Cp4.1LG10g00930 vs. Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-52
Identity = 184/438 (42.01%), Postives = 244/438 (55.71%), Query Frame = 1 

Query: 42  LTTNLLKLFEPRPPLEFKPP-----PEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGE 101
           L  NLL LF PR P+ + PP      EK    P  G+A ++  F +P D   +PP  + E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPAQRRARIHLLRIEKGAKKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  +R  R    +IE+  ++   EL  +   +DPN  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRARLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERG 221
           EFE YGPIKR  ++  K +GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRWLGGGLGTTRVGGEDNNQKQSGREQ--QQSGAPSRSEEPRAREDRIGERFC 281
           RTV  WRPR LGGGLG TR GG D N + SGR+   +    P  S  P    DR  ER  
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 VIRLRFNIFRDREKSYEKGRDRERER------EKSHERSRERSKDRDV-KEDRHHRDRDR 341
             R R    RD+E+   + R R+R R      ++   RSRERSKD+D  ++ R  R R+R
Sbjct: 245 RERSRE---RDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRER 304

Query: 342 TRDRDRDRERDKERDRGHDRDRTRDRDR------------------DRGRDRGRDYERDR 401
            R R+R+R+ +     G   D     +                   D   ++GRD +RDR
Sbjct: 305 AR-RERERKEELRGGGGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRDR 364

Query: 402 GR----DRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDRHGDRDRDID 444
            R    +R+R RDRDR+RDR+ + G    DRGR   R      +     +  G+  RD+ 
Sbjct: 365 RRSHRSERERRRDRDRDRDREHKRGERGGDRGRDEARGGGGGGQDN-GLEGLGNDGRDM- 424

[Close]
BLAST of Cp4.1LG10g00930 vs. TrEMBL
Match: A0A0A0KGZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502610 PE=4 SV=1)

HSP 1 Score: 756.1 bits (1951), Expect = 2.6e-215
Identity = 417/489 (85.28%), Postives = 439/489 (89.78%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY+DAFMRN NAAVQ RTKAQNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPPLTGMAQFVSNFAEPDDPEY+PPV KGETP +RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR RLITDKVTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
           N+Q+ SGREQQQSGAPSRSEEPR REDR GE            RDREKSY+KGRDRER+R
Sbjct: 241 NSQRHSGREQQQSGAPSRSEEPRVREDRHGE------------RDREKSYDKGRDRERDR 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS E S ERSK+RDV+EDRHHRDRDRTRDRDRDR+RD+ERDR  DR   RDR RDRGRD
Sbjct: 301 EKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRDRERDR--DRGYDRDRTRDRGRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDRHGDR 420
           RGRDYERD  RDRDRHRDRDRER+RD EGG+PDPDRGRSHDR+     ESKYEKDRHGDR
Sbjct: 361 RGRDYERD--RDRDRHRDRDRERERDHEGGYPDPDRGRSHDRDDYDRVESKYEKDRHGDR 420

Query: 421 DRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDRYD 480
           DRD+DRAETEDG GWYDQPE+GHR  D+DP  Q YDHFEHNR RGQYD PE HR+QDRYD
Sbjct: 421 DRDVDRAETEDGRGWYDQPEHGHRDADHDP--QYYDHFEHNRGRGQYDQPEGHRDQDRYD 471

Query: 481 Q-NDRMEDD 489
           Q +DRM+DD
Sbjct: 481 QYDDRMDDD 471

[Close]
BLAST of Cp4.1LG10g00930 vs. TrEMBL
Match: B9S6I9_RICCO (U1 small nuclear ribonucleoprotein 70 kDa, putative OS=Ricinus communis GN=RCOM_0536950 PE=4 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 8.4e-174
Identity = 359/497 (72.23%), Postives = 395/497 (79.48%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY+DAFMRN NAAV+  TK QNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVRGATKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQFV+ FAEP DPEY+PPV + ETP QRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVTQFAEPGDPEYAPPVQEAETPTQRRARIHQLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY    DPN++GDPYKTLFVARLNYETTESRIKREFESYGPIKR RLITDK   KP+G
Sbjct: 121 LQKYDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKAANKPRG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMKAAYKQADGRK+DGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
            NQ+ SGRE QQSG  SRSEEPR REDR  E            RDREKS E+GRDRE+ER
Sbjct: 241 VNQRNSGRELQQSGGSSRSEEPRPREDRYNE------------RDREKSRERGRDREKER 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS E S ER +DRD KEDRHHRDRDR RDR+RDRE      RG DRDR RDR RDRGRD
Sbjct: 301 EKSREHSHERPRDRDHKEDRHHRDRDRERDRERDRE------RGRDRDRDRDRARDRGRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNR-ESKYEKDRHGD 420
           RGRDYERDR RDR R  DRDR RDR+ +    D DRGRSHDRESD++R ESK+E+DR   
Sbjct: 361 RGRDYERDRDRDRGREHDRDRPRDRERDYEVGDHDRGRSHDRESDYDRVESKHERDRRA- 420

Query: 421 RDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDRY 480
            +RD + AE ED  GWY+QPE GHR  D + D Q YDH+EH RSRGQ+D+ + H + DRY
Sbjct: 421 -ERDYEHAEPEDDSGWYEQPEQGHRRQDAEHD-QRYDHYEH-RSRGQFDNMDGHGDHDRY 475

Query: 481 DQ--------NDRMEDD 489
           DQ         DR+++D
Sbjct: 481 DQYPDHDRDRYDRIDED 475

[Close]
BLAST of Cp4.1LG10g00930 vs. TrEMBL
Match: A0A067L2J1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05185 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 4.6e-172
Identity = 352/482 (73.03%), Postives = 395/482 (81.95%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGD  D FMRN NAAV+  TK QNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDNTDPFMRNQNAAVRGNTKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQFVS FAEP +PEY+PPV K ETPAQRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVSQFAEPGEPEYAPPVQKAETPAQRRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY   +DPN++GDPYKTLFVARLNYETTESRIKREFESYGPIKR RLITDK T KP+G
Sbjct: 121 LQKYDPNNDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKATSKPRG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMKAAYKQADGRK+DGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
            NQ+ SGRE QQSG  SRSEEPRAREDR            +I R+REKS E+GRDRERER
Sbjct: 241 VNQRYSGREVQQSGGSSRSEEPRAREDR------------HIEREREKSRERGRDRERER 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS ERS +R +DRD +EDRH+RDRDR RDR+R+RER ++RDR  DRDRTRDRDR  GRD
Sbjct: 301 EKSRERSHDRPRDRDHREDRHNRDRDRERDRERERERGRDRDR--DRDRTRDRDR--GRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNR-ESKYEKDRHGD 420
           RGR+YERDR RDR R  DRDR R+R+ +    + DRGRSHDRESD++R ESK+E+DR  +
Sbjct: 361 RGREYERDRDRDRGRDHDRDRTRERERDYEVGENDRGRSHDRESDYDRVESKHERDRRSE 420

Query: 421 RDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDRY 480
           RD   + AE ED  GWY+QPE GH   D + D Q YDH+EH+RSRG+YDH +   + DRY
Sbjct: 421 RD--YEHAEPEDDRGWYEQPEQGHGRQDTEDD-QRYDHYEHHRSRGKYDHMDVRGDHDRY 463

Query: 481 DQ 482
           +Q
Sbjct: 481 EQ 463

[Close]
BLAST of Cp4.1LG10g00930 vs. TrEMBL
Match: B9HEV8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12690g PE=4 SV=2)

HSP 1 Score: 599.4 bits (1544), Expect = 4.0e-168
Identity = 353/498 (70.88%), Postives = 392/498 (78.71%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY+DAFMRNPNAAV+   K QNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNPNAAVRGSAKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP  GMAQFVS+FAEP DPEY+PP+ + ETPA+R+ARIH  R+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYLGMAQFVSHFAEPGDPEYAPPIKEAETPAERKARIHAARLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY   +DPNV+GDPYKTLFVARL+YETTESRIKREFESYGPIKR R++ DKVT KP+G
Sbjct: 121 LQKYDPTNDPNVSGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRMVADKVTNKPRG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMK AYKQADGRK+DGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHTRDMKGAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
            NQK SGRE QQSG  SRSEEPR REDR  E            RDRE S E+GRD+ER+R
Sbjct: 241 VNQKHSGREVQQSGGSSRSEEPRTREDRQTE------------RDREVSRERGRDKERDR 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS ERS ++ +DRD +EDRHHRDR+R RD      RDKER+RG DRD  RDR RDRGRD
Sbjct: 301 EKSRERSHDKPRDRDHREDRHHRDRERERD------RDKERERGRDRD--RDRTRDRGRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDRHGDR 420
           RGRDYERDR RDR R RDR R+R+RD E    DPDRGRSHDR+     ESK+E+DR G  
Sbjct: 361 RGRDYERDRERDRGRDRDRTRDRERDYE--VSDPDRGRSHDRD-----ESKHERDRLG-- 420

Query: 421 DRDIDRAETEDGHGWYDQPEYGHRHPD--NDPDHQNYDHFEHNRSRGQYDHPEDHRNQDR 480
           +RD D AE ED  GWY+QPE G R PD  NDP    YDH+EH+RSRG YD  +   +QDR
Sbjct: 421 ERDYDHAEPEDDRGWYEQPEQGQRLPDAENDP---RYDHYEHHRSRGPYDPMDVQGDQDR 466

Query: 481 YDQ--------NDRMEDD 489
           YDQ         D+MEDD
Sbjct: 481 YDQYPDRDHDRYDQMEDD 466

[Close]
BLAST of Cp4.1LG10g00930 vs. TrEMBL
Match: A0A068U0H1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037249001 PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 2.6e-167
Identity = 338/494 (68.42%), Postives = 397/494 (80.36%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY DA MRN NAAVQ RTKAQNRANV+QLKLIGQSHPTGLTTNLLKLFEPRPPLE+KP
Sbjct: 1   MGDYSDALMRNQNAAVQARTKAQNRANVMQLKLIGQSHPTGLTTNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQFVSNFA+P D EY+PPV K ETP +RRARIH +R+E+GAKKA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAQPGDAEYAPPVQKAETPVERRARIHKIRLEEGAKKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY   +DPN++GDPYKTLFVARLNYETTESRIKREFE+YG IKR RL+TDK T KP+G
Sbjct: 121 LEKYDPNNDPNISGDPYKTLFVARLNYETTESRIKREFEAYGAIKRVRLVTDKSTNKPRG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEY+H RDMKAAYKQADG+KID RRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYVHTRDMKAAYKQADGKKIDNRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
            NQ+ SGREQ Q G  SRSEEPR R+DR               R+REKS E+ RDRERER
Sbjct: 241 LNQRYSGREQVQPGGASRSEEPRMRDDRD--------------REREKSRERVRDRERER 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRD--RDRDRG 360
           E+S ERS++R++DR+ +EDRHHRDR+R RDR      DKERDRG DRDR RD  RDRDRG
Sbjct: 301 ERSQERSQDRTRDREHREDRHHRDRERNRDR------DKERDRGRDRDRDRDRTRDRDRG 360

Query: 361 RDRGRDYERDRGR----DRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNR-ESKYE 420
           RDRGRDYERDR R    +RDR+R+R+R+RDRD E G  D DRG SHDRE D+++ E+K++
Sbjct: 361 RDRGRDYERDRDRSRDQERDRNRERERDRDRDHEVGDADNDRGGSHDREYDYDKVEAKHD 420

Query: 421 KDRHGDRDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDH 480
           ++RHG+R+R+ D AE ED  GWY+Q + G + P+ + DH +YD+++H + +GQYD+    
Sbjct: 421 RERHGERERNYDHAEQEDDRGWYEQSDRGRKRPEGEHDHGHYDYYDHYQGQGQYDNQGAQ 474

Query: 481 RNQDRYDQNDRMED 488
            + DRY  +DR  D
Sbjct: 481 GDDDRYQDSDRYHD 474

[Close]
BLAST of Cp4.1LG10g00930 vs. TAIR10
Match: AT3G50670.1 (AT3G50670.1 U1 small nuclear ribonucleoprotein-70K)

HSP 1 Score: 451.8 bits (1161), Expect = 5.3e-127
Identity = 285/469 (60.77%), Postives = 334/469 (71.22%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGD  D F+RNPNAAVQ R K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQFVSNFAEP DPEY+PP  + E P+Q+R RIH LR+EKG +KA E+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKREFESYGPIKR  L+TD++T KPKG
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMKAAYKQADG+KIDGRRVLVDVERGRTVPNWRPR LGGGLGT+RVGG +
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEP-RAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERE 300
               +   EQQ  G  S+SEEP R RE                  +REKS EKG++RER 
Sbjct: 241 ----EIVGEQQPQGRTSQSEEPSRPRE------------------EREKSREKGKERERS 300

Query: 301 REKSHERSRERSKDRDVKEDRHHRDRD---RTRDRDRDRERDKERDRGHDRDRTRDRDRD 360
           RE SHE+ RERS+DR  +ED+HHRDRD   R RDRD  R+RD+ RDRG DRDR   RDRD
Sbjct: 301 RELSHEQPRERSRDRP-REDKHHRDRDQGGRDRDRDSRRDRDRTRDRG-DRDR---RDRD 360

Query: 361 RGRDRGRDYERDRGRDRDRHRDRDRERDRDLEGG-FPDPDRGRSHDRESDFNRESKYEKD 420
           RGRDR           RD  RDR R+++RD EGG +     GRS +R++++  E +  + 
Sbjct: 361 RGRDR---------TSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERDAEYRGEPEETRG 418

Query: 421 RHGDRDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSR 465
            + D   D DR              Y HR+   + D   Y+  E+ RS+
Sbjct: 421 YYEDDQGDTDR--------------YSHRYDKMEEDDFRYER-EYKRSK 418

[Close]
BLAST of Cp4.1LG10g00930 vs. TAIR10
Match: AT2G43370.1 (AT2G43370.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 7.3e-12
Identity = 93/267 (34.83%), Postives = 130/267 (48.69%), Query Frame = 1 

Query: 129 DPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKGYAFIEYMH 188
           D    GDPY TLFV RL++ TTE  ++     YG IK  RL+   VTG  +GY F+EY  
Sbjct: 55  DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114

Query: 189 KRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGEDNNQKQSGR 248
           +++M  AY+ A    IDGR ++VD  R + +P W PR LGGGLG    G +++ Q + G 
Sbjct: 115 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLG----GRKESGQLRFGG 174

Query: 249 EQQQSGAPSRSEEPRARED--RIG-----ERFCVIRLRFNIFRDREKSYEKGRDRERERE 308
             +   AP R   P   ED  ++G     E   + R +      R K     R+ E  RE
Sbjct: 175 RDRPFRAPLR---PIPHEDLKKLGIQLPPEGRYMSRTQIP-SPPRRKGSVSDREEEYYRE 234

Query: 309 KSHERSRERSKDRDVKEDRH-HRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRG-R 368
           KS     E  K+R      H HR    T    R R +D+E +   +  R+  ++R RG  
Sbjct: 235 KSSVEREEEFKERSSLRSYHSHRSSAHTHSSHRRRSKDRE-ECSREESRSDRKERARGME 294

Query: 369 DRGRDYERD-RGRDRDRHRDRDRERDR 386
           DR  D + +  G  R +  + DR R R
Sbjct: 295 DRYGDNKGEVSGSKRSKRSEEDRSRKR 312

[Close]
BLAST of Cp4.1LG10g00930 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 140 LFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKGYAFIEYMHKRDMKAAYKQA 199
           LFV+RL+  TT+  +++ F  +G IK ARLI D  T +PKG+ FI +  + D + A K  
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 200 DGRKIDGRRVLVDVER 216
           DG+ +DGR + V+V +
Sbjct: 69  DGKIVDGRLIFVEVAK 84

[Close]
BLAST of Cp4.1LG10g00930 vs. TAIR10
Match: AT3G20930.1 (AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 127 RDDPNVTGDPYKT--LFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKGYAFI 186
           RD  +    P KT  LF+  L++ T+E  ++  FE +G +   ++I DK++ + KGYAF+
Sbjct: 269 RDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFL 328

Query: 187 EYMHKRDMKAAYKQADGRKIDGRRVLVDVER 216
           EY  +     A K+ +G+ I+G  ++VDV +
Sbjct: 329 EYTTEEAAGTALKEMNGKIINGWMIVVDVAK 359

[Close]
BLAST of Cp4.1LG10g00930 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-10
Identity = 27/89 (30.34%), Postives = 51/89 (57.30%), Query Frame = 1 

Query: 130 PNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKGYAFIEYMHK 189
           P+ +  P   L+V+ L++ TTE  ++  FE +G +    ++ DKV  +PKG+AF+ Y  +
Sbjct: 69  PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128

Query: 190 RDMKAAYKQADGRKIDGRRVLVDVERGRT 219
            +   A +   G+ +DGR + V+  + R+
Sbjct: 129 EEAMKAIQGMHGKFLDGRVIFVEEAKTRS 157

[Close]
BLAST of Cp4.1LG10g00930 vs. NCBI nr
Match: gi|659080269|ref|XP_008440701.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo])

HSP 1 Score: 760.8 bits (1963), Expect = 1.5e-216
Identity = 420/491 (85.54%), Postives = 443/491 (90.22%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY+DAFMRN NAAVQ RTKAQNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPPLTGMAQFVSNFAEPDDPEY+PPV KGETPA+RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR RLITDKVTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
           N+Q+ SGREQQQSGAPSRSEEPRAREDR GE            RDREKSY+KGRDRERER
Sbjct: 241 NSQRHSGREQQQSGAPSRSEEPRAREDRHGE------------RDREKSYDKGRDRERER 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS E S ERSK+RDV+EDRHHRDRDRTRDRDRDR+R+++RDRG+DRDRT    RDRGRD
Sbjct: 301 EKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRERDRDRGYDRDRT----RDRGRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDRHG-- 420
           RGRDYERD  RDRDRHRDRDRERDRD EGG+PDPDRGRSHDR+     ESKYEKDRHG  
Sbjct: 361 RGRDYERD--RDRDRHRDRDRERDRDHEGGYPDPDRGRSHDRDDYDRVESKYEKDRHGDR 420

Query: 421 DRDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDR 480
           DRDRD+DRAETEDG GWYDQPE+GHR  D+DP  Q YDHFEHNR RGQYD PE HR+QDR
Sbjct: 421 DRDRDMDRAETEDGRGWYDQPEHGHRDADHDP--QYYDHFEHNRGRGQYDQPEGHRDQDR 471

Query: 481 YDQ-NDRMEDD 489
           YDQ +DRM+DD
Sbjct: 481 YDQYDDRMDDD 471

[Close]
BLAST of Cp4.1LG10g00930 vs. NCBI nr
Match: gi|449451513|ref|XP_004143506.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus])

HSP 1 Score: 756.1 bits (1951), Expect = 3.7e-215
Identity = 417/489 (85.28%), Postives = 439/489 (89.78%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY+DAFMRN NAAVQ RTKAQNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPPLTGMAQFVSNFAEPDDPEY+PPV KGETP +RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR RLITDKVTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
           N+Q+ SGREQQQSGAPSRSEEPR REDR GE            RDREKSY+KGRDRER+R
Sbjct: 241 NSQRHSGREQQQSGAPSRSEEPRVREDRHGE------------RDREKSYDKGRDRERDR 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS E S ERSK+RDV+EDRHHRDRDRTRDRDRDR+RD+ERDR  DR   RDR RDRGRD
Sbjct: 301 EKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRDRERDR--DRGYDRDRTRDRGRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDRHGDR 420
           RGRDYERD  RDRDRHRDRDRER+RD EGG+PDPDRGRSHDR+     ESKYEKDRHGDR
Sbjct: 361 RGRDYERD--RDRDRHRDRDRERERDHEGGYPDPDRGRSHDRDDYDRVESKYEKDRHGDR 420

Query: 421 DRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDRYD 480
           DRD+DRAETEDG GWYDQPE+GHR  D+DP  Q YDHFEHNR RGQYD PE HR+QDRYD
Sbjct: 421 DRDVDRAETEDGRGWYDQPEHGHRDADHDP--QYYDHFEHNRGRGQYDQPEGHRDQDRYD 471

Query: 481 Q-NDRMEDD 489
           Q +DRM+DD
Sbjct: 481 QYDDRMDDD 471

[Close]
BLAST of Cp4.1LG10g00930 vs. NCBI nr
Match: gi|255561192|ref|XP_002521608.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ricinus communis])

HSP 1 Score: 618.2 bits (1593), Expect = 1.2e-173
Identity = 359/497 (72.23%), Postives = 395/497 (79.48%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY+DAFMRN NAAV+  TK QNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVRGATKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQFV+ FAEP DPEY+PPV + ETP QRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVTQFAEPGDPEYAPPVQEAETPTQRRARIHQLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY    DPN++GDPYKTLFVARLNYETTESRIKREFESYGPIKR RLITDK   KP+G
Sbjct: 121 LQKYDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKAANKPRG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMKAAYKQADGRK+DGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
            NQ+ SGRE QQSG  SRSEEPR REDR  E            RDREKS E+GRDRE+ER
Sbjct: 241 VNQRNSGRELQQSGGSSRSEEPRPREDRYNE------------RDREKSRERGRDREKER 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS E S ER +DRD KEDRHHRDRDR RDR+RDRE      RG DRDR RDR RDRGRD
Sbjct: 301 EKSREHSHERPRDRDHKEDRHHRDRDRERDRERDRE------RGRDRDRDRDRARDRGRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNR-ESKYEKDRHGD 420
           RGRDYERDR RDR R  DRDR RDR+ +    D DRGRSHDRESD++R ESK+E+DR   
Sbjct: 361 RGRDYERDRDRDRGREHDRDRPRDRERDYEVGDHDRGRSHDRESDYDRVESKHERDRRA- 420

Query: 421 RDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDRY 480
            +RD + AE ED  GWY+QPE GHR  D + D Q YDH+EH RSRGQ+D+ + H + DRY
Sbjct: 421 -ERDYEHAEPEDDSGWYEQPEQGHRRQDAEHD-QRYDHYEH-RSRGQFDNMDGHGDHDRY 475

Query: 481 DQ--------NDRMEDD 489
           DQ         DR+++D
Sbjct: 481 DQYPDHDRDRYDRIDED 475

[Close]
BLAST of Cp4.1LG10g00930 vs. NCBI nr
Match: gi|731387184|ref|XP_010649159.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Vitis vinifera])

HSP 1 Score: 618.2 bits (1593), Expect = 1.2e-173
Identity = 353/491 (71.89%), Postives = 398/491 (81.06%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGDY+DA MRN NAAVQ RTKAQNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDALMRNNNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQF SNFAEP +PEYSPPV K ETPAQRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFASNFAEPGEPEYSPPVQKAETPAQRRARIHKLRLEKGAEKATEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
             KY   +DPN++GDPYKTLFVARLNYETTESRIKREFE+YGPIKR RLITDK T KP+G
Sbjct: 121 FQKYDPNNDPNISGDPYKTLFVARLNYETTESRIKREFEAYGPIKRVRLITDKETSKPRG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMKAAYKQADGRK+D RRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
            N K SGREQQ  G P RSEEPR REDR G+R            DREKS E+GRDRERER
Sbjct: 241 VNPKYSGREQQPVGGPPRSEEPRTREDRHGDR------------DREKSRERGRDRERER 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS  R  +R++DRD +EDRHHRDRDR RD+DRD      RDRG DRDRT  RDRDRGRD
Sbjct: 301 EKS--REPDRARDRDHREDRHHRDRDRNRDKDRD------RDRGRDRDRT--RDRDRGRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRE----RDRDLEGGFPDPDRGRSHDRESDFNRESKYEKDR 420
           RGRDYER+R RDRDR R+R++E    RD+D + G P+ DRGRS D+E   + ESK+E++R
Sbjct: 361 RGRDYERERDRDRDRPREREKEKEKDRDKDYDAGEPNYDRGRSRDKEYYDHMESKHERER 420

Query: 421 HGDRDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPE---DH 480
           HG+RDRD++ A  ED HGWY+QPE+GHR P+ + D ++Y H++H ++RGQYDH +   DH
Sbjct: 421 HGERDRDLEHAGPEDDHGWYEQPEHGHRRPEAEHDDEHYKHYDH-QARGQYDHLDAQGDH 468

Query: 481 RNQDRYDQNDR 485
              DR+  NDR
Sbjct: 481 DLYDRHADNDR 468

[Close]
BLAST of Cp4.1LG10g00930 vs. NCBI nr
Match: gi|802596054|ref|XP_012072033.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Jatropha curcas])

HSP 1 Score: 612.5 bits (1578), Expect = 6.6e-172
Identity = 352/482 (73.03%), Postives = 395/482 (81.95%), Query Frame = 1 

Query: 1   MGDYDDAFMRNPNAAVQTRTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKP 60
           MGD  D FMRN NAAV+  TK QNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDNTDPFMRNQNAAVRGNTKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYSPPVLKGETPAQRRARIHLLRIEKGAKKAVEE 120
           PPEKRKCPP TGMAQFVS FAEP +PEY+PPV K ETPAQRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVSQFAEPGEPEYAPPVQKAETPAQRRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRARLITDKVTGKPKG 180
           L KY   +DPN++GDPYKTLFVARLNYETTESRIKREFESYGPIKR RLITDK T KP+G
Sbjct: 121 LQKYDPNNDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKATSKPRG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRWLGGGLGTTRVGGED 240
           YAFIEYMH RDMKAAYKQADGRK+DGRRVLVDVERGRTVPNWRPR LGGGLGTTRVGGE+
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NNQKQSGREQQQSGAPSRSEEPRAREDRIGERFCVIRLRFNIFRDREKSYEKGRDRERER 300
            NQ+ SGRE QQSG  SRSEEPRAREDR            +I R+REKS E+GRDRERER
Sbjct: 241 VNQRYSGREVQQSGGSSRSEEPRAREDR------------HIEREREKSRERGRDRERER 300

Query: 301 EKSHERSRERSKDRDVKEDRHHRDRDRTRDRDRDRERDKERDRGHDRDRTRDRDRDRGRD 360
           EKS ERS +R +DRD +EDRH+RDRDR RDR+R+RER ++RDR  DRDRTRDRDR  GRD
Sbjct: 301 EKSRERSHDRPRDRDHREDRHNRDRDRERDRERERERGRDRDR--DRDRTRDRDR--GRD 360

Query: 361 RGRDYERDRGRDRDRHRDRDRERDRDLEGGFPDPDRGRSHDRESDFNR-ESKYEKDRHGD 420
           RGR+YERDR RDR R  DRDR R+R+ +    + DRGRSHDRESD++R ESK+E+DR  +
Sbjct: 361 RGREYERDRDRDRGRDHDRDRTRERERDYEVGENDRGRSHDRESDYDRVESKHERDRRSE 420

Query: 421 RDRDIDRAETEDGHGWYDQPEYGHRHPDNDPDHQNYDHFEHNRSRGQYDHPEDHRNQDRY 480
           RD   + AE ED  GWY+QPE GH   D + D Q YDH+EH+RSRG+YDH +   + DRY
Sbjct: 421 RD--YEHAEPEDDRGWYEQPEQGHGRQDTEDD-QRYDHYEHHRSRGKYDHMDVRGDHDRY 463

Query: 481 DQ 482
           +Q
Sbjct: 481 EQ 463

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g00930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RU17_ARATH9.3e-12660.77U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 S... [more]
RU17_XENTR5.0e-6343.12U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 ... [more]
RU17_XENLA4.9e-5842.11U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1[more]
RU17_HUMAN1.3e-5542.41U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2[more]
RU17_BOVIN1.4e-5242.01U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1[more]
BLAST of Cp4.1LG10g00930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGZ1_CUCSA2.6e-21585.28Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502610 PE=4 SV=1[more]
B9S6I9_RICCO8.4e-17472.23U1 small nuclear ribonucleoprotein 70 kDa, putative OS=Ricinus communis GN=RCOM_... [more]
A0A067L2J1_JATCU4.6e-17273.03Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05185 PE=4 SV=1[more]
B9HEV8_POPTR4.0e-16870.88Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12690g PE=4 SV=2[more]
A0A068U0H1_COFCA2.6e-16768.42Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037249001 PE=4 SV=1[more]
BLAST of Cp4.1LG10g00930 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50670.15.3e-12760.77 U1 small nuclear ribonucleoprotein-70K[more]
AT2G43370.17.3e-1234.83 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G46020.19.6e-1242.11 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G20930.11.4e-1034.07 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G73530.19.0e-1030.34 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG10g00930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080269|ref|XP_008440701.1|1.5e-21685.54PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo][more]
gi|449451513|ref|XP_004143506.1|3.7e-21585.28PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus][more]
gi|255561192|ref|XP_002521608.1|1.2e-17372.23PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ricinus communis][more]
gi|731387184|ref|XP_010649159.1|1.2e-17371.89PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Vitis vinifera][more]
gi|802596054|ref|XP_012072033.1|6.6e-17273.03PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Jatropha curcas... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR022023U1snRNP70_N
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0030619 U1 snRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g00930.1Cp4.1LG10g00930.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 140..209
score: 1.2
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 139..212
score: 1.3
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 138..216
score: 17
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 116..230
score: 6.1
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 127..242
score: 3.9
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 41..129
score: 5.5
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 32..438
score: 6.2E
NoneNo IPR availablePANTHERPTHR13952:SF5U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDAcoord: 32..438
score: 6.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g00930Cucsa.127380Cucumber (Gy14) v1cgycpeB0331
Cp4.1LG10g00930CmaCh03G007570Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g00930CmoCh03G007850Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g00930CmoCh07G004940Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g00930Cla014204Watermelon (97103) v1cpewmB073
Cp4.1LG10g00930Csa6G502610Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g00930MELO3C007821Melon (DHL92) v3.5.1cpemeB060
Cp4.1LG10g00930ClCG01G019460Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g00930CSPI06G30920Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g00930Lsi01G006820Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g00930MELO3C007821.2Melon (DHL92) v3.6.1cpemedB080
Cp4.1LG10g00930CsaV3_6G046180Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g00930Bhi03G000997Wax gourdcpewgoB0084
Cp4.1LG10g00930CsGy6G030440Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g00930Carg16041Silver-seed gourdcarcpeB1064
Cp4.1LG10g00930Carg00652Silver-seed gourdcarcpeB0554
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g00930Cp4.1LG19g09510Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g00930Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG10g00930Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG10g00930Cucurbita pepo (Zucchini)cpecpeB091
Cp4.1LG10g00930Cucurbita pepo (Zucchini)cpecpeB103
Cp4.1LG10g00930Cucumber (Gy14) v1cgycpeB0610
Cp4.1LG10g00930Cucurbita maxima (Rimu)cmacpeB459
Cp4.1LG10g00930Cucurbita maxima (Rimu)cmacpeB702
Cp4.1LG10g00930Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g00930Cucurbita moschata (Rifu)cmocpeB003
Cp4.1LG10g00930Cucurbita moschata (Rifu)cmocpeB146
Cp4.1LG10g00930Cucurbita moschata (Rifu)cmocpeB419
Cp4.1LG10g00930Cucurbita moschata (Rifu)cmocpeB655
Cp4.1LG10g00930Wild cucumber (PI 183967)cpecpiB053
Cp4.1LG10g00930Cucumber (Chinese Long) v2cpecuB059
Cp4.1LG10g00930Bottle gourd (USVL1VR-Ls)cpelsiB069
Cp4.1LG10g00930Watermelon (Charleston Gray)cpewcgB085
Cp4.1LG10g00930Watermelon (Charleston Gray)cpewcgB088
Cp4.1LG10g00930Watermelon (97103) v1cpewmB068
Cp4.1LG10g00930Melon (DHL92) v3.5.1cpemeB052
Cp4.1LG10g00930Melon (DHL92) v3.6.1cpemedB068
Cp4.1LG10g00930Silver-seed gourdcarcpeB1300
Cp4.1LG10g00930Silver-seed gourdcarcpeB1306
Cp4.1LG10g00930Silver-seed gourdcarcpeB1350
Cp4.1LG10g00930Silver-seed gourdcarcpeB1413
Cp4.1LG10g00930Cucumber (Chinese Long) v3cpecucB0061