Cp4.1LG09g10520 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g10520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Plastid transcriptionally active 2 isoform 2
Location	Cp4.1LG09 : 9183071 .. 9188935 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGCCGTAGATTTTTTTTCAGATGACTGGAGATTGTCCTCCGATGCGGGGAAGTGCCGGGCGAAGCCGAAGGATCTTGTTCTTGGGAATATGTCGGTAATTTTTTAGACGGGCGAGTACAGCTATGATGTTGAAACCGCCACGAGGTAGCATAGCTCGTTGTCTTGATATCTTCAAGAATAGGCTCTCACTCAATGACTTCAGCTTGGATTTTAAGGAATTCGCGGCGTGCGGCGATTGGCAAAGCTCTTTACGCCTCTTTAATACACGCAGCGTCAGATATGGTGCAAGCCGAACGAGTACATCTATGCCATCGTGATCAGCTTTCTCGGGCGCAAAGGATTGCTAGAGAACTGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTGATACGTAGCATGTTTTCTTATACCGCTTTGATAAATGCCTACGGGTGCAATGGTCAGTACGAAACCTCACTCGCACTTCTTGAAAGGATGAAGAGAGAGAGAGAGAGTGTCGCCTAATATATTGACTTACAATACCGTGATAAATGCATGTGCTAGAGGTGATTTAGATTGCGAGGGACTGTTGGGACTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTGGTTACTTAAAATACTTTGCTTAGTGCATGTGCTGCCCGCGGTTTAGGTGATGAGGCAGTGATGGTCTTCAAAACTATGATAGAGGGAGGGATCGTCCCGGAGATAACAACATACAGTTTATAGTTCTAACATTTGAAAAACTGGGTAAGCTCGAGAAAGTTGCTATGTTTTGCTAAAAGAAATGGAGTCCGAAGGTTATATGCCTGACATATCATCCAACAATGTGTGAATAGAGGCATATGAAAATCAGCGTCGATTAAGGAGATCAATGGATGTGTTTAAGCAGATGCAAGCAGCAGGATGCGTGCCAAATTCGTCAACTTACAGCATTCTGTTGAATCTATATGGGAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCTGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTATTTGGAGAGGGTGGATACTTCAAGGAGGTTGTAGCTTTGTTTCATGACTTTCTGGATGAAAAGATTGACCCAAATATCGAAACATAGTATTTGCTTGTGGAAAGGGAGGGTTGCATGAGGATGCCAAGAAAATTTTACTTCGCATGAATGAGAAAGGAATAGTTCCAAGTTCTAATGCGTATAGTGGACTGTTTGAAGCTTATGGACGTGCTGCATTGTATGATGAAGCTCTTGTTGCATTTAACACAATGAACGAAGTGGGAAATAAGTCAACTGTTGATACCTACAATTCGCTAATTCACTCATTTGCTAGAGGTGGACTGTACATGGAGTTTGAAGCAATCTTGTTGAGAATGAGAGAATCCGGCAATTCAAGGAATGTGAATTCATTTAGTGGTATTGTTGAAGGTTATAGGCAAAGTGGTAAGTTTGAAGAAGCTATAAAGTCCTTTGTTGAGATGGAAAAGCTGAGATGTGAACCCATTGAGAAGGCCCTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTTGATGAGAGCAAGGAGCAGTTTCATGAGATTAAAGCTTCAGGAATATTACCTAGTGTATTATGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGACCGGTAATAATTACTGTGTGTATGTGTGTGTGTGTGTGGTATTTGTCTATGAAAGTTATGTTCATTATTAACTCATGTTTTCTTAGTTTTATTTCCAATTGATATAGACTGTTCAGGGTACCTTTCTCTTAAACAAATTTTGTGCTCATGATTCAGTCTATCATAATTTTATTCTATACAGAAATCTGTCACGCCTTGAAGGCTGGTTACTTAGAAAATGTGTAGTTATATGAGATTGAGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGCTTACGCGTTTTAAAAACCTTGAGGAAAAGCCCGAAAGGGAAAGTCAAAGAAGACAATATCTACTAGCGGTGGCTTGGGCCGATATAGATACAGAGATGGTTGGAGCATTTTAGAGATTTTGAGGGGGAATTGTTAATGGACGACAGTTAGATAAACATCCTTCACTTTCCCTTTTCTGTTAATGTTGTAAGGTCCTCAGAATAGTCTGTTTTGTCTCGAAAAAATTCTTCTTCCTTAAAATCCCTATATCATGCAACATGATCATGACCTTGCCATGTGCAAAAAAGGAACTCATTGTATGGACCATGAAGTCAATGGTCATTTTATACCAAGTTAGAGTTATAGGAAGAGTTTGTCAGTTGTCATCGGTTGTTAACTCTTACCTTGTAAGAACATCATTTGTTTCCTCATTGTCGACATTTTTCTTAGATGATTTCTCCAGCAATTATCACTAATTAACTATCAGAGTTGGACCATTTTAAGAAATATATGGTTTTATCATTACATCTCATAGTCCCTTCTTTCCAGGTGGGATGATGCCTGTGAATTACTTGATGAGACGATTACAAACAGGGTATCCAGTGTTCATCAAGTCATTGGCCAGATGATCAAGGGAGACTACGATAATGGTTGAATATGTTTTTGACAAACTTAATGCTCAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGTTAGAAGCACTTTGGTGGCTTGGACAGAAAGGGCGTGCTGCAAGGGTTCTCACTGAAGCAACAAAACGAGGCCTTTTGCCTGAAATTTTCCGCAAAAACAATCTCGTGTGGTCTGTGGATGTGCACAGGTAAAATTGGAATCGTCTTTTCTTCCATGCTGGCTGGCTGATACCTGTGCTTGAGTTTATACTAATTCGTATGTCTGGTGAAATTATTACTCTAAATCATTCCCCTCTAAATCTTCCAGAAGCAAAGATATCCAGATCTAGTATAGATCACAAGTACAAAGATGTTGATTCTAAATCAAGTTATAGGACAGGAACTGAGCTCAGACCTCAACCGTCCGAAGGAAATTATGATGTCCCACATTGGTTGGGAGAAGAACAAAACACCCTTTATGAGGGTATGGAAACCTCCCATGGCGGACACGTTTTAAAAACCTTGAGAGGAAGTCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGAAGTGGATTTGGGCCATTACAAATGGTATTAGAGCTAGACACTGGATTATGTGCCAGCGAGGAGGCTGTTCCCCAAAGGGGTAGATACGAGACGGTGTCCTAGTAAGGACGGGCCCCAAAGGGGGGTGGATTAGACGGGGGTCCCACATCGATTGGAGAAAGGAAAGAGTGCCAGTGAGGACGCTGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAAACACATTTTATAAGGGTATGGAAACCTCCCCTAGTATACGTGTTTTAAAAAGCCTTGAGGGGAGGTTTGAACGAGAAAGTCCAAAAAGAACAATGTCTGCTAGCGGTGGATCTAGACCGTTACAGAAATACAAGGCTTTGTTGAGGATTGTTGGGAGAGGAGTCCCACGTCGGCTAATTAAGAGGTTGATCATGAGTTTATAAGTAAGGAATACATCTCGATTGGTATGAGGTCTTTTGGAGAAACCAAAAGTAAAACCACTCTAACTTATGCTCAAAGTGGACAGTATCATACCAATGTGGAAGTCCGTAGTTCCTACCGAGCTGAGCATCTAGTTTTCAAGTCTTGGAATCCATCCCCTCCCATTTTAATTGGTAGGATGTGATCCACAGCGCCAATATCAGCTCTTTTGAGTTTGGAAAGAACTCACCAAATGATTTCATCACACCATTCAGGTGATGGCGGAGTTTTCTTGCAACATTGATCGTGATAATTCAGTGTTGAATTAAGGGAAGAAGATGCATGCATAAGAAAGAGGTTAGTACTTCTGTAGCTGTAGAATTAATATTCTTTATTGAAAAAAAGCCGTTTATAGGTAATCATTAGACCAACGGTTTAAATCTCTCTGAACTAATCAGGGAGATGCGATGTGAATATTCTTTATTGGAAAAAACCGTTTATAGGTAATCATTAGACCATTGGTTTAAATCTCTCTGAATTAATCAGGGAGATGCGATGTGAGATCCCACATCGATCAGAGAAAGGAACGAGCGCCAGCAAAGACGCTGGCTCCAAATGGGGGTGGATTATAAGATCTTATATTGGTTAGAAAGGAAGACAAAACATTATTTATAAGAGTTTAAAAACCTCTCTCTAGCAGATGTGAAAACCCAAAAGAGAAAATAAAAAATAGAAAACAGAAAGAGAACAATATCTGCTAGCCCCGTTTGTTTCTATGTATTTATTTATTTATTTATCGATATTAGAAAGAAAAACTATTCTTTTTTTTACATGAATATTACATAACTCTTGGGCGTGTATCCGTAGAGAGATTTATTGATTGGAAAGGTCACATCTGTGGTTTCTTATATTCTTTTTTAAGATATGAAATGGAAGAAAGAAGAAAGTAGAAAAGATCCTTAAAAAAAGTACTCTTTGATGGGATGTTCCTCTTTCACGCTTGCCCACACACACATTTCCTGAAGATGCCTTATTCATTTTCTCTCCTATCTTTTTTTTCTCCTTAAGATATGATTTTGACTACTGCTAGGAAAATGAAAAACTTTTGAATGAAAAATTATTAACCACACTTTTTAATCTAAGAGTCGAAGCCTACTACTAGCCGATATTGTCTGTTTAGTCTGTTATATATCGTCTTCAGCCTCATGATTTTAAAATGTGTTTGCTAGAGAGAGGTTTTTATGCCGTTATAAAGAATACTTTGTTCCCTTCTCCAATTGAGTAAACTTTTGTTGATCCATTAATATATAATTTTTTTTGTCTTTCAATAATTTTTTTGAAGTTGCAGAGGGAAATCAAACTAACGGGAGAGTTTCAAATGGTGTGAGTTGCTGGAGAAGATGAAGAGTTTTTGATTGATTCATTAAATGGTGACAGGTAATTATACTCTCAAATTGACATTTTTCATCGGTGAATTTGGTTCATTTTACATAGATAAGTTAAGATTACTCATTTTTTTGCTCAACAAATTGATCTTTAGATTCTAAAATACTCATATTTTTAAATATGCTATGACAATAGAACCCGCCCAAAGCAAAGTCATGAGAGTTTATGCTCAAAGTAGACAATATCATACACGGTGGAGAGTTGTGTTCATCTAATATGGTATAAGAGTCATGCCCTAAATTTAGTCATGTCAATAGAATCCTCAAATGTCGAACAAAGGACTCCAAAAGGAGGCTCCTCGAAGGCATCGTAAAAAATGACTAAAACTCCAAAAGAAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGTACTTTGTTCGAGGGTAGGTGTTACATCAACTAATTTAGAGAATGATCATGGGTTTATAAGTAAGGAATATATCTCTGTTTTTTCGGGGAAGTCCAAAGCAAAGCCATAAGAGCTTATGTTCAAAGTAGACAATATCATACTATTGTAGAGAGTCGTGTTCATCTAACACATCTAATTACAATTATAAGTGCACAATAGAAGTTATCCACGACGTCACTTTTATCAATTTGTTTATTTGTATTTGTATTTACAATTATTGATCCCATTAAAAATTTCTTAGGTCTATATGCACATTTTAGTACAGATGAATTAATGTTGCATATTCTACTACACATATATTTAATTCAATACAATGTAATCATGTATGGATTATTGATCCATAAACTCTTTTCCTAAGTCTGCACATTTTAGTCGTTGAATTTGCAATAG

mRNA sequence

ATGTTCGCCGTAGATTTTTTTTCAGATGACTGGAGATTGTCCTCCGATGCGGGGAAGTGCCGGGCGAAGCCGAAGGATCTTGTTCTTGGGAATATGTCGCGTCAGATATGGTGCAAGCCGAACGAGTACATCTATGCCATCGTGATCAGCTTTCTCGGGCGCAAAGGATTGCTAGAGAACTGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTGATACGTAGCATGTTTTCTTATACCGCTTTGATAAATGCCTACGGGTGCAATGGTCAAGGTGATTTAGATTGCGAGGGACTGTTGGGACTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTGATGCAAGCAGCAGGATGCGTGCCAAATTCGTCAACTTACAGCATTCTGTTGAATCTATATGGGAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCTGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTATTTGGAGAGGGTGGATACTTCAAGGAGGGAGGGTTGCATGAGGATGCCAAGAAAATTTTACTTCGCATGAATGAGAAAGGAATAGTTCCAAGTTCTAATGCGTATAGTGGACTGTTTGAAGCTTATGGACGTGCTGCATTGTATGATGAAGCTCTTGTTGCATTTAACACAATGAACGAAGTGGGAAATAAGTCAACTGTTGATACCTACAATTCGCTAATTCACTCATTTGCTAGAGGTGGACTGTACATGGAGTTTGAAGCAATCTTGTTGAGAATGAGAGAATCCGGCAATTCAAGGAATGTGAATTCATTTAGTGGTATTGTTGAAGGTTATAGGCAAAGTGGTAAGTTTGAAGAAGCTATAAAGTCCTTTGTTGAGATGGAAAAGCTGAGATGTGAACCCATTGAGAAGGCCCTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTTGATGAGAGCAAGGAGCAGTTTCATGAGATTAAAGCTTCAGGAATATTACCTAGTGTATTATGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGACCGGTGGGATGATGCCTGTGAATTACTTGATGAGACGATTACAAACAGGGTATCCAGTGTTCATCAAGTCATTGGCCAGATGATCAAGGGAGACTACGATAATGGTTGAATATGTTTTTGACAAACTTAATGCTCAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGTTAGAAGCACTTTGGTGGCTTGGACAGAAAGGGCGTGCTGCAAGGGTTCTCACTGAAGCAACAAAACGAGGCCTTTTGCCTGAAATTTTCCGCAAAAACAATCTCGTGTGGTCTGTGGATGTGCACAGGTAAAATTGGAATCGTCTTTTCTTCCATGCTGGCTGGCTGATACCTGTGCTTGAGTTTATACTAATTCGTATGTCTGGTGAAATTATTACTCTAAATCATTCCCCTCTAAATCTTCCAGAAGCAAAGATATCCAGATCTAGTATAGATCACAAGTACAAAGATGTTGATTCTAAATCAAGTTATAGGACAGGAACTGAGCTCAGACCTCAACCGTCCGAAGGAAATTATGATGTCCCACATTGGTTGGGAGAAGAACAAAACACCCTTTATGAGGGTATGGAAACCTCCCATGGCGGACACGTTTTAAAAACCTTGAGAGGAAGTCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGAAGTGGATTTGGGCCATTACAAATGGTATTAGAGCTAGACACTGGATTATGTGCCAGCGAGGAGGCTGTTCCCCAAAGGGGTAGATACGAGACGGTGTCCTAGTAAGGACGGGCCCCAAAGGGGGGTGGATTAGACGGGGGTCCCACATCGATTGGAGAAAGGAAAGAGTGCCAGTGAGGACGCTGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAAACACATTTTATAAGGGTATGGAAACCTCCCCTAGTATACGTGTTTTAAAAAGCCTTGAGGGGAGGTTTGAACGAGAAAGTCCAAAAAGAACAATGTCTGCTAGCGGTGGATCTAGACCGTTACAGAAATACAAGGCTTTGTTGAGGATTGTTGGGAGAGGAGTCCCACGTCGGCTAATTAAGAGGTTGATCATGAGTTTATAAGTAAGGAATACATCTCGATTGGTATGAGGTCTTTTGGAGAAACCAAAAGTAAAACCACTCTAACTTATGCTCAAAGTGGACAGTATCATACCAATGTGGAAGTCCGTAGTTCCTACCGAGCTGAGCATCTAGTTTTCAAGTCTTGGAATCCATCCCCTCCCATTTTAATTGGTAGGATGTGATCCACAGCGCCAATATCAGCTCTTTTGAGTTTGGAAAGAACTCACCAAATGATTTCATCACACCATTCAGGTGATGGCGGAGTTTTCTTGCAACATTGATCGTGATAATTCAGTGTTGAATTAAGGGAAGAAGATGCATGCATAAGAAAGAGAGGGAAATCAAACTAACGGGAGAGTTTCAAATGGTGTGAGTTGCTGGAGAAGATGAAGAGTTTTTGATTGATTCATTAAATGGTGACAGGTAATTATACTCTCAAATTGACATTTTTCATCGGTGAATTTGGTTCATTTTACATAGATAAGTTAAGATTACTCATTTTTTTGCTCAACAAATTGATCTTTAGATTCTAAAATACTCATATTTTTAAATATGCTATGACAATAGAACCCGCCCAAAGCAAAGTCATGAGAGTTTATGCTCAAAGTAGACAATATCATACACGGTGGAGAGTTGTGTTCATCTAATATGGTATAAGAGTCATGCCCTAAATTTAGTCATGTCAATAGAATCCTCAAATGTCGAACAAAGGACTCCAAAAGGAGGCTCCTCGAAGGCATCGTAAAAAATGACTAAAACTCCAAAAGAAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGTACTTTGTTCGAGGGTAGGTGTTACATCAACTAATTTAGAGAATGATCATGGGTTTATAAGTAAGGAATATATCTCTGTTTTTTCGGGGAAGTCCAAAGCAAAGCCATAAGAGCTTATGTTCAAAGTAGACAATATCATACTATTGTAGAGAGTCGTGTTCATCTAACACATCTAATTACAATTATAAGTGCACAATAGAAGTTATCCACGACGTCACTTTTATCAATTTGTTTATTTGTATTTGTATTTACAATTATTGATCCCATTAAAAATTTCTTAGGTCTATATGCACATTTTAGTACAGATGAATTAATGTTGCATATTCTACTACACATATATTTAATTCAATACAATGTAATCATGTATGGATTATTGATCCATAAACTCTTTTCCTAAGTCTGCACATTTTAGTCGTTGAATTTGCAATAG

Coding sequence (CDS)

ATGTTCGCCGTAGATTTTTTTTCAGATGACTGGAGATTGTCCTCCGATGCGGGGAAGTGCCGGGCGAAGCCGAAGGATCTTGTTCTTGGGAATATGTCGCGTCAGATATGGTGCAAGCCGAACGAGTACATCTATGCCATCGTGATCAGCTTTCTCGGGCGCAAAGGATTGCTAGAGAACTGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTGATACGTAGCATGTTTTCTTATACCGCTTTGATAAATGCCTACGGGTGCAATGGTCAAGGTGATTTAGATTGCGAGGGACTGTTGGGACTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTGATGCAAGCAGCAGGATGCGTGCCAAATTCGTCAACTTACAGCATTCTGTTGAATCTATATGGGAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCTGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTATTTGGAGAGGGTGGATACTTCAAGGAGGGAGGGTTGCATGAGGATGCCAAGAAAATTTTACTTCGCATGAATGAGAAAGGAATAGTTCCAAGTTCTAATGCGTATAGTGGACTGTTTGAAGCTTATGGACGTGCTGCATTGTATGATGAAGCTCTTGTTGCATTTAACACAATGAACGAAGTGGGAAATAAGTCAACTGTTGATACCTACAATTCGCTAATTCACTCATTTGCTAGAGGTGGACTGTACATGGAGTTTGAAGCAATCTTGTTGAGAATGAGAGAATCCGGCAATTCAAGGAATGTGAATTCATTTAGTGGTATTGTTGAAGGTTATAGGCAAAGTGGTAAGTTTGAAGAAGCTATAAAGTCCTTTGTTGAGATGGAAAAGCTGAGATGTGAACCCATTGAGAAGGCCCTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTTGATGAGAGCAAGGAGCAGTTTCATGAGATTAAAGCTTCAGGAATATTACCTAGTGTATTATGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGACCGGTGGGATGATGCCTGTGAATTACTTGATGAGACGATTACAAACAGGGTATCCAGTGTTCATCAAGTCATTGGCCAGATGATCAAGGGAGACTACGATAATGGTTGA

Protein sequence

MFAVDFFSDDWRLSSDAGKCRAKPKDLVLGNMSRQIWCKPNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEGLLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYDEALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIVEGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGILPSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDNG

Homology

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BLAST of Cp4.1LG09g10520 vs. Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.2e-93
Identity = 172/351 (49.00%), Postives = 243/351 (69.23%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y +++    + G ++    +F +M + G   +  +Y+ L+N +G +G+ D     
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYD----D 374

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF EM+     PD          ++TY+IL+ ++G+ G + +V  LF +M E + EP
Sbjct: 375 VRQLFLEMKSSNTDPD----------AATYNILIEVFGEGGYFKEVVTLFHDMVEENIEP 434

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           D  TY  +I   G      +GGLHEDA+KIL  M    IVPSS AY+G+ EA+G+AALY+
Sbjct: 435 DMETYEGIIFACG------KGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYE 494

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTM+EVG+  +++T++SL++SFARGGL  E EAIL R+ +SG  RN ++F+  +
Sbjct: 495 EALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 554

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           E Y+Q GKFEEA+K++V+MEK RC+P E+ LEAVL VY FA LVDE +EQF E+KAS IL
Sbjct: 555 EAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDIL 614

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PS++CYCMMLAVY K +RWDD  ELL+E ++NRVS++HQVIGQMIKGDYD+
Sbjct: 615 PSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDD 645

[Close]

BLAST of Cp4.1LG09g10520 vs. Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.7e-35
Identity = 102/360 (28.33%), Postives = 171/360 (47.50%), Query Frame = 1


Query: 43  YIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEGLLG 102
           Y ++ +IS  GR GL E    +F+ M   G+  ++ +Y A+I+A G   +G ++ + +  
Sbjct: 269 YAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACG---KGGMEFKQVAK 328

Query: 103 LFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDAT 162
            F EM+  GVQPD +          T++ LL +  + G ++  R LF EM     E D  
Sbjct: 329 FFDEMQRNGVQPDRI----------TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF 388

Query: 163 TYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYDEAL 222
           +YN L+    +GG        + A +IL +M  K I+P+  +YS + + + +A  +DEAL
Sbjct: 389 SYNTLLDAICKGGQM------DLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEAL 448

Query: 223 VAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIVEGY 282
             F  M  +G      +YN+L+  + + G   E   IL  M   G  ++V +++ ++ GY
Sbjct: 449 NLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGY 508

Query: 283 RQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGILPSV 342
            + GK++E  K F EM++    P       ++  Y   GL  E+ E F E K++G+   V
Sbjct: 509 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADV 568

Query: 343 LCYCMMLAVYAKNDRWDDACELLDETITNRVS-------SVHQVIGQMI----KGDYDNG 392
           + Y  ++    KN     A  L+DE     +S       S+    G+        DY NG
Sbjct: 569 VLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNG 609

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BLAST of Cp4.1LG09g10520 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.3e-33
Identity = 81/327 (24.77%), Postives = 152/327 (46.48%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y  +IS   R G+L+   E+ ++MA +G    +F+YT L++ +   G+     E 
Sbjct: 347 PSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK----VES 406

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
            + +F EMR+          AGC PN  T++  + +YG  G++ ++ ++F E+      P
Sbjct: 407 AMSIFEEMRN----------AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP 466

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           D  T+N L+ VFG+ G      +  +   +   M   G VP    ++ L  AY R   ++
Sbjct: 467 DIVTWNTLLAVFGQNG------MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFE 526

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           +A+  +  M + G    + TYN+++ + ARGG++ + E +L  M +     N  ++  ++
Sbjct: 527 QAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 586

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
             Y    +         E+     EP    L+ ++ V     L+ E++  F E+K  G  
Sbjct: 587 HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 646

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLD 367
           P +     M+++Y +      A  +LD
Sbjct: 647 PDITTLNSMVSIYGRRQMVAKANGVLD 653

[Close]

BLAST of Cp4.1LG09g10520 vs. Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.7e-30
Identity = 82/276 (29.71%), Postives = 136/276 (49.28%), Query Frame = 1


Query: 34  RQIWCKPNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQG 93
           + I  KP+   Y +VI   G+   L++    FD M S+G+     ++  LI         
Sbjct: 436 KSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI--------- 495

Query: 94  DLDCEGLLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMK 153
           D  C+    + AE   E      M+  GC+P ++TY+I++N YG   R+DD++ L  +MK
Sbjct: 496 DCHCKHGRHIVAEEMFEA-----MERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMK 555

Query: 154 ESSAEPDATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYG 213
                P+  T+  L+ V+G+ G F       DA + L  M   G+ PSS  Y+ L  AY 
Sbjct: 556 SQGILPNVVTHTTLVDVYGKSGRFN------DAIECLEEMKSVGLKPSSTMYNALINAYA 615

Query: 214 RAALYDEALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVN 273
           +  L ++A+ AF  M   G K ++   NSLI++F       E  A+L  M+E+G   +V 
Sbjct: 616 QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVV 675

Query: 274 SFSGIVEGYRQSGKFEEAIKSFVEMEKLRCEPIEKA 310
           +++ +++   +  KF++    + EM    C+P  KA
Sbjct: 676 TYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKA 691

[Close]

BLAST of Cp4.1LG09g10520 vs. Swiss-Prot
Match: PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-29
Identity = 87/334 (26.05%), Postives = 154/334 (46.11%), Query Frame = 1


Query: 38  CKPNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDC 97
           C+P    Y I+I     +G ++   ++ DEM S+G+   MF+Y  +I    C        
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM-CK------- 283

Query: 98  EGLLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSA 157
           EG++    EM         ++  GC P+  +Y+ILL      G++++  +L  +M     
Sbjct: 284 EGMVDRAFEMVRN------LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 343

Query: 158 EPDATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAAL 217
           +P+  TY+ILI      G        E+A  +L  M EKG+ P + +Y  L  A+ R   
Sbjct: 344 DPNVVTYSILITTLCRDGKI------EEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 403

Query: 218 YDEALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSG 277
            D A+    TM   G    +  YN+++ +  + G   +   I  ++ E G S N +S++ 
Sbjct: 404 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 463

Query: 278 IVEGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASG 337
           +      SG    A+   +EM     +P E    +++   C  G+VDE+ E   ++++  
Sbjct: 464 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 523

Query: 338 ILPSVLCYCMMLAVYAKNDRWDDACELLDETITN 372
             PSV+ Y ++L  + K  R +DA  +L+  + N
Sbjct: 524 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537

[Close]

BLAST of Cp4.1LG09g10520 vs. TrEMBL
Match: A0A0A0LW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045740 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.5e-112
Identity = 211/351 (60.11%), Postives = 261/351 (74.36%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y ++I    + G ++   ++F +M + G + +  +Y+ L+N YG +G+ D     
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD----D 381

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF +M+    +PD          ++TY+IL+ ++G+ G + +V  LF ++ + + +P
Sbjct: 382 VRELFLQMKESSAEPD----------ATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDP 441

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  L+   G+GG      LHEDAKKIL  MN KGIVPSS AYSGL EAYG+AALYD
Sbjct: 442 NMETYEGLVFACGKGG------LHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD 501

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTMNEVG+KST+DTYNSLIH+FARGGLY EFEAIL RMRE G SRN  SFSGI+
Sbjct: 502 EALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGII 561

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           EGYRQSG++EEAIK+FVEMEK+RCE  E+ LE VLGVYCFAGLVDESKEQF EIKASGIL
Sbjct: 562 EGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGIL 621

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSVLCYCMMLAVYAKN RWDDA ELLDE I  RVSS+HQVIGQMIKGDYD+
Sbjct: 622 PSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDD 652

[Close]

BLAST of Cp4.1LG09g10520 vs. TrEMBL
Match: F6GSY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07500 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 3.0e-105
Identity = 196/351 (55.84%), Postives = 258/351 (73.50%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y +++    + G ++    +F +M   G + +  +Y+ L+N YG +G+ D     
Sbjct: 320 PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYD----D 379

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF EM+    +P          N++TY+IL+N++G+ G + +V  LF +M E + EP
Sbjct: 380 VRDLFLEMKVSNTEP----------NAATYNILINVFGEGGYFKEVVTLFHDMVEENVEP 439

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  LI   G+GG      LHEDAKKILL MNEKG+VPSS AY+G+ EAYG+AALY+
Sbjct: 440 NMETYEGLIFACGKGG------LHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYE 499

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTMNEVG+K TV+TYNSLI  FA+GGLY E EAILL+M +SG +RN ++F+G++
Sbjct: 500 EALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVI 559

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           E +RQ G+FEEAIK++VEMEK RC+P E+ LEAVL VYCFAGLV+ES+EQF EIKA GIL
Sbjct: 560 EAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGIL 619

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSV+CYCMMLAVYAK DRWDDA +LLDE  TNRVS++HQVIGQMI+GDYD+
Sbjct: 620 PSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDD 650

[Close]

BLAST of Cp4.1LG09g10520 vs. TrEMBL
Match: V4SYF8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018817mg PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.3e-103
Identity = 191/351 (54.42%), Postives = 257/351 (73.22%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y +++    + G ++   ++F +M + G + +  +Y+ L+N YG NG+ D     
Sbjct: 321 PDVTCYNVLLEAHAKMGSIKEAMDVFRQMQAAGSVANATTYSILLNLYGRNGRYD----D 380

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF EM+          A+   PN++TY+IL+ ++G+ G + +V  LF +M E + EP
Sbjct: 381 VRELFLEMK----------ASNTEPNAATYNILIQVFGEGGYFKEVVTLFHDMVEENVEP 440

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  LI   G      +GGLHED KKILL MNE+G VPSS AY+G+ EAYG AALY+
Sbjct: 441 NMETYEGLIFACG------KGGLHEDVKKILLYMNERGTVPSSKAYTGVIEAYGLAALYE 500

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTMNEV +K T++TYNSL+H+FARGGLY E +AIL RM ESG +RN +SF+ ++
Sbjct: 501 EALVAFNTMNEVESKPTIETYNSLLHTFARGGLYKECQAILSRMSESGVARNSDSFNAVI 560

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           E +RQ G+FEEAIK++VEMEK+RC+P E+ LEAVL VYCFAGLVDESKEQF EIK+SGIL
Sbjct: 561 EAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL 620

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSV+CYCM+LAVYAK++RWDDA  LLDE  TNR+S++HQV GQMIKG++D+
Sbjct: 621 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 651

[Close]

BLAST of Cp4.1LG09g10520 vs. TrEMBL
Match: A0A067K823_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11544 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 4.8e-103
Identity = 191/346 (55.20%), Postives = 257/346 (74.28%), Query Frame = 1


Query: 45  YAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEGLLGLF 104
           Y +++    RKG +++   +F +M   G + +  +Y+ L+N YG +G+ D     +  LF
Sbjct: 325 YNVLLEAYARKGNIKDAMGVFRQMQEAGCVPNAVTYSILLNLYGRHGRYD----DVRELF 384

Query: 105 AEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTY 164
            EM+    +PD+          +TY+IL+ ++G+ G + +V  LF +M E + EP+  TY
Sbjct: 385 LEMKVSNTEPDV----------ATYNILIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTY 444

Query: 165 NILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYDEALVA 224
             LI   G+GG      LHEDAKKILL M+E+G+VPSS AY+ + EAYG+AALYDEALV 
Sbjct: 445 EGLIYACGKGG------LHEDAKKILLHMDEQGVVPSSKAYTSVIEAYGQAALYDEALVM 504

Query: 225 FNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIVEGYRQ 284
           FNTMNE+G+K TVDTYNSLI+ FARGGLY E EAIL +M ESG +++ NSF+G++EGY+Q
Sbjct: 505 FNTMNEMGSKPTVDTYNSLIYMFARGGLYKESEAILWKMGESGVAQDRNSFNGLIEGYKQ 564

Query: 285 SGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGILPSVLC 344
            G+FEEAIK++VEMEK R EP E++LEAVL VYC AGL+DES+EQF EI+ASGILPSV+C
Sbjct: 565 GGQFEEAIKAYVEMEKARFEPDERSLEAVLSVYCAAGLIDESEEQFREIRASGILPSVMC 624

Query: 345 YCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           YCMMLAVYAK++RW++  E+LDE +TNRVS++HQVIGQMIKGDYD+
Sbjct: 625 YCMMLAVYAKSNRWNEVYEVLDEMVTNRVSNIHQVIGQMIKGDYDD 650

[Close]

BLAST of Cp4.1LG09g10520 vs. TrEMBL
Match: A0A061FUI6_THECC (Plastid transcriptionally active 2 isoform 3 OS=Theobroma cacao GN=TCM_011951 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.7e-100
Identity = 186/351 (52.99%), Postives = 250/351 (71.23%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y +++    + G ++    +F +M   G   +  +Y+ L+N YG NG+ D     
Sbjct: 310 PDIMSYNVLLEAYAKSGSIKEAMGVFKQMQVAGCAPNATTYSILLNLYGRNGRYD----D 369

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF EM+    +PD          ++TY+IL+ ++G+ G + +V  LF +M E + EP
Sbjct: 370 VRELFLEMKESNTEPD----------AATYNILIQVFGEGGYFKEVVTLFHDMVEENIEP 429

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY+ LI   G+GG      LHEDAKKILL MNEK IVPSS AY+G+ EAYG+AALY+
Sbjct: 430 NVKTYDGLIFACGKGG------LHEDAKKILLHMNEKCIVPSSRAYTGVIEAYGQAALYE 489

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           E LVAFNTMNEV +  T++TYNSL+ +FARGGLY E  AIL RM E+G ++N +SF+ ++
Sbjct: 490 EVLVAFNTMNEVESNPTIETYNSLLQTFARGGLYKEANAILSRMNETGVAKNRDSFNALI 549

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           E +RQ G+FE+AIK++VEMEK RC+P E+ LEAVL VYCFAGLVDES EQF EIKA G+L
Sbjct: 550 EAFRQGGQFEDAIKAYVEMEKARCDPDERTLEAVLSVYCFAGLVDESNEQFQEIKALGVL 609

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSV+CYCMMLAVYAK DRWDDA +L DE +TN+VS++HQVIG+MI+GDYD+
Sbjct: 610 PSVMCYCMMLAVYAKCDRWDDAYQLFDEMLTNKVSNIHQVIGKMIRGDYDD 640

[Close]

BLAST of Cp4.1LG09g10520 vs. TAIR10
Match: AT1G74850.1 (AT1G74850.1 plastid transcriptionally active 2)

HSP 1 Score: 344.0 bits (881), Expect = 1.2e-94
Identity = 172/351 (49.00%), Postives = 243/351 (69.23%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y +++    + G ++    +F +M + G   +  +Y+ L+N +G +G+ D     
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYD----D 374

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF EM+     PD          ++TY+IL+ ++G+ G + +V  LF +M E + EP
Sbjct: 375 VRQLFLEMKSSNTDPD----------AATYNILIEVFGEGGYFKEVVTLFHDMVEENIEP 434

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           D  TY  +I   G      +GGLHEDA+KIL  M    IVPSS AY+G+ EA+G+AALY+
Sbjct: 435 DMETYEGIIFACG------KGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYE 494

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTM+EVG+  +++T++SL++SFARGGL  E EAIL R+ +SG  RN ++F+  +
Sbjct: 495 EALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 554

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           E Y+Q GKFEEA+K++V+MEK RC+P E+ LEAVL VY FA LVDE +EQF E+KAS IL
Sbjct: 555 EAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDIL 614

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PS++CYCMMLAVY K +RWDD  ELL+E ++NRVS++HQVIGQMIKGDYD+
Sbjct: 615 PSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDD 645

[Close]

BLAST of Cp4.1LG09g10520 vs. TAIR10
Match: AT2G31400.1 (AT2G31400.1 genomes uncoupled 1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-36
Identity = 102/360 (28.33%), Postives = 171/360 (47.50%), Query Frame = 1


Query: 43  YIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEGLLG 102
           Y ++ +IS  GR GL E    +F+ M   G+  ++ +Y A+I+A G   +G ++ + +  
Sbjct: 269 YAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACG---KGGMEFKQVAK 328

Query: 103 LFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDAT 162
            F EM+  GVQPD +          T++ LL +  + G ++  R LF EM     E D  
Sbjct: 329 FFDEMQRNGVQPDRI----------TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF 388

Query: 163 TYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYDEAL 222
           +YN L+    +GG        + A +IL +M  K I+P+  +YS + + + +A  +DEAL
Sbjct: 389 SYNTLLDAICKGGQM------DLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEAL 448

Query: 223 VAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIVEGY 282
             F  M  +G      +YN+L+  + + G   E   IL  M   G  ++V +++ ++ GY
Sbjct: 449 NLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGY 508

Query: 283 RQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGILPSV 342
            + GK++E  K F EM++    P       ++  Y   GL  E+ E F E K++G+   V
Sbjct: 509 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADV 568

Query: 343 LCYCMMLAVYAKNDRWDDACELLDETITNRVS-------SVHQVIGQMI----KGDYDNG 392
           + Y  ++    KN     A  L+DE     +S       S+    G+        DY NG
Sbjct: 569 VLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNG 609

[Close]

BLAST of Cp4.1LG09g10520 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-34
Identity = 81/327 (24.77%), Postives = 152/327 (46.48%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y  +IS   R G+L+   E+ ++MA +G    +F+YT L++ +   G+     E 
Sbjct: 347 PSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK----VES 406

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
            + +F EMR+          AGC PN  T++  + +YG  G++ ++ ++F E+      P
Sbjct: 407 AMSIFEEMRN----------AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP 466

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           D  T+N L+ VFG+ G      +  +   +   M   G VP    ++ L  AY R   ++
Sbjct: 467 DIVTWNTLLAVFGQNG------MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFE 526

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           +A+  +  M + G    + TYN+++ + ARGG++ + E +L  M +     N  ++  ++
Sbjct: 527 QAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 586

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
             Y    +         E+     EP    L+ ++ V     L+ E++  F E+K  G  
Sbjct: 587 HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 646

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLD 367
           P +     M+++Y +      A  +LD
Sbjct: 647 PDITTLNSMVSIYGRRQMVAKANGVLD 653

[Close]

BLAST of Cp4.1LG09g10520 vs. TAIR10
Match: AT5G42310.1 (AT5G42310.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-31
Identity = 82/276 (29.71%), Postives = 136/276 (49.28%), Query Frame = 1


Query: 34  RQIWCKPNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQG 93
           + I  KP+   Y +VI   G+   L++    FD M S+G+     ++  LI         
Sbjct: 436 KSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI--------- 495

Query: 94  DLDCEGLLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMK 153
           D  C+    + AE   E      M+  GC+P ++TY+I++N YG   R+DD++ L  +MK
Sbjct: 496 DCHCKHGRHIVAEEMFEA-----MERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMK 555

Query: 154 ESSAEPDATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYG 213
                P+  T+  L+ V+G+ G F       DA + L  M   G+ PSS  Y+ L  AY 
Sbjct: 556 SQGILPNVVTHTTLVDVYGKSGRFN------DAIECLEEMKSVGLKPSSTMYNALINAYA 615

Query: 214 RAALYDEALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVN 273
           +  L ++A+ AF  M   G K ++   NSLI++F       E  A+L  M+E+G   +V 
Sbjct: 616 QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVV 675

Query: 274 SFSGIVEGYRQSGKFEEAIKSFVEMEKLRCEPIEKA 310
           +++ +++   +  KF++    + EM    C+P  KA
Sbjct: 676 TYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKA 691

[Close]

BLAST of Cp4.1LG09g10520 vs. TAIR10
Match: AT3G04760.1 (AT3G04760.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-30
Identity = 87/334 (26.05%), Postives = 154/334 (46.11%), Query Frame = 1


Query: 38  CKPNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDC 97
           C+P    Y I+I     +G ++   ++ DEM S+G+   MF+Y  +I    C        
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM-CK------- 283

Query: 98  EGLLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSA 157
           EG++    EM         ++  GC P+  +Y+ILL      G++++  +L  +M     
Sbjct: 284 EGMVDRAFEMVRN------LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 343

Query: 158 EPDATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAAL 217
           +P+  TY+ILI      G        E+A  +L  M EKG+ P + +Y  L  A+ R   
Sbjct: 344 DPNVVTYSILITTLCRDGKI------EEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 403

Query: 218 YDEALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSG 277
            D A+    TM   G    +  YN+++ +  + G   +   I  ++ E G S N +S++ 
Sbjct: 404 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 463

Query: 278 IVEGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASG 337
           +      SG    A+   +EM     +P E    +++   C  G+VDE+ E   ++++  
Sbjct: 464 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 523

Query: 338 ILPSVLCYCMMLAVYAKNDRWDDACELLDETITN 372
             PSV+ Y ++L  + K  R +DA  +L+  + N
Sbjct: 524 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537

[Close]

BLAST of Cp4.1LG09g10520 vs. NCBI nr
Match: gi|659067140|ref|XP_008437858.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 419.5 bits (1077), Expect = 6.6e-114
Identity = 213/351 (60.68%), Postives = 264/351 (75.21%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y ++I    + G ++   ++F +M + G + +  +Y+ L+N YG +G+ D     
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD----D 381

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF +M+    +PD          ++TY+IL+ ++G+ G + +V  LF ++ E + +P
Sbjct: 382 VRELFLQMKESSAEPD----------ATTYNILIRVFGEGGYFKEVVTLFHDLVEENIDP 441

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  L+   G+GG      LHEDAKKIL  MNEKGIVPSS AY+GL EAYG+AALYD
Sbjct: 442 NMETYEGLVFACGKGG------LHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALYD 501

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EA+VAFNTMNEVG+KST+DTYNSLIH+FARGGLY EFEAIL RMRE G SRN  SFSGI+
Sbjct: 502 EAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGII 561

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           EGYRQSG++EEAIK+FVEMEK+RCE  E+ LEAVLGVYCFAGLVDESKEQF EIKASGIL
Sbjct: 562 EGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGIL 621

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSVLCYCMMLAVYAKN RWDDA ELLDE I NRVSS+HQVIGQMIKGDYD+
Sbjct: 622 PSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDD 652

[Close]

BLAST of Cp4.1LG09g10520 vs. NCBI nr
Match: gi|659067138|ref|XP_008437850.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 419.5 bits (1077), Expect = 6.6e-114
Identity = 213/351 (60.68%), Postives = 264/351 (75.21%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y ++I    + G ++   ++F +M + G + +  +Y+ L+N YG +G+ D     
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD----D 381

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF +M+    +PD          ++TY+IL+ ++G+ G + +V  LF ++ E + +P
Sbjct: 382 VRELFLQMKESSAEPD----------ATTYNILIRVFGEGGYFKEVVTLFHDLVEENIDP 441

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  L+   G+GG      LHEDAKKIL  MNEKGIVPSS AY+GL EAYG+AALYD
Sbjct: 442 NMETYEGLVFACGKGG------LHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALYD 501

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EA+VAFNTMNEVG+KST+DTYNSLIH+FARGGLY EFEAIL RMRE G SRN  SFSGI+
Sbjct: 502 EAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGII 561

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           EGYRQSG++EEAIK+FVEMEK+RCE  E+ LEAVLGVYCFAGLVDESKEQF EIKASGIL
Sbjct: 562 EGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGIL 621

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSVLCYCMMLAVYAKN RWDDA ELLDE I NRVSS+HQVIGQMIKGDYD+
Sbjct: 622 PSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDD 652

[Close]

BLAST of Cp4.1LG09g10520 vs. NCBI nr
Match: gi|449469490|ref|XP_004152453.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 414.5 bits (1064), Expect = 2.1e-112
Identity = 211/351 (60.11%), Postives = 261/351 (74.36%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y ++I    + G ++   ++F +M + G + +  +Y+ L+N YG +G+ D     
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD----D 381

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF +M+    +PD          ++TY+IL+ ++G+ G + +V  LF ++ + + +P
Sbjct: 382 VRELFLQMKESSAEPD----------ATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDP 441

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  L+   G+GG      LHEDAKKIL  MN KGIVPSS AYSGL EAYG+AALYD
Sbjct: 442 NMETYEGLVFACGKGG------LHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD 501

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTMNEVG+KST+DTYNSLIH+FARGGLY EFEAIL RMRE G SRN  SFSGI+
Sbjct: 502 EALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGII 561

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           EGYRQSG++EEAIK+FVEMEK+RCE  E+ LE VLGVYCFAGLVDESKEQF EIKASGIL
Sbjct: 562 EGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGIL 621

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSVLCYCMMLAVYAKN RWDDA ELLDE I  RVSS+HQVIGQMIKGDYD+
Sbjct: 622 PSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDD 652

[Close]

BLAST of Cp4.1LG09g10520 vs. NCBI nr
Match: gi|778657681|ref|XP_011651334.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 414.5 bits (1064), Expect = 2.1e-112
Identity = 211/351 (60.11%), Postives = 261/351 (74.36%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y ++I    + G ++   ++F +M + G + +  +Y+ L+N YG +G+ D     
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD----D 381

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF +M+    +PD          ++TY+IL+ ++G+ G + +V  LF ++ + + +P
Sbjct: 382 VRELFLQMKESSAEPD----------ATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDP 441

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  L+   G+GG      LHEDAKKIL  MN KGIVPSS AYSGL EAYG+AALYD
Sbjct: 442 NMETYEGLVFACGKGG------LHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD 501

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTMNEVG+KST+DTYNSLIH+FARGGLY EFEAIL RMRE G SRN  SFSGI+
Sbjct: 502 EALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGII 561

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           EGYRQSG++EEAIK+FVEMEK+RCE  E+ LE VLGVYCFAGLVDESKEQF EIKASGIL
Sbjct: 562 EGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGIL 621

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSVLCYCMMLAVYAKN RWDDA ELLDE I  RVSS+HQVIGQMIKGDYD+
Sbjct: 622 PSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDD 652

[Close]

BLAST of Cp4.1LG09g10520 vs. NCBI nr
Match: gi|297733858|emb|CBI15105.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 390.2 bits (1001), Expect = 4.3e-105
Identity = 196/351 (55.84%), Postives = 258/351 (73.50%), Query Frame = 1


Query: 40  PNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEG 99
           P+   Y +++    + G ++    +F +M   G + +  +Y+ L+N YG +G+ D     
Sbjct: 78  PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYD----D 137

Query: 100 LLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEP 159
           +  LF EM+    +P          N++TY+IL+N++G+ G + +V  LF +M E + EP
Sbjct: 138 VRDLFLEMKVSNTEP----------NAATYNILINVFGEGGYFKEVVTLFHDMVEENVEP 197

Query: 160 DATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYD 219
           +  TY  LI   G      +GGLHEDAKKILL MNEKG+VPSS AY+G+ EAYG+AALY+
Sbjct: 198 NMETYEGLIFACG------KGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYE 257

Query: 220 EALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIV 279
           EALVAFNTMNEVG+K TV+TYNSLI  FA+GGLY E EAILL+M +SG +RN ++F+G++
Sbjct: 258 EALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVI 317

Query: 280 EGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGIL 339
           E +RQ G+FEEAIK++VEMEK RC+P E+ LEAVL VYCFAGLV+ES+EQF EIKA GIL
Sbjct: 318 EAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGIL 377

Query: 340 PSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDN 391
           PSV+CYCMMLAVYAK DRWDDA +LLDE  TNRVS++HQVIGQMI+GDYD+
Sbjct: 378 PSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDD 408

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g10520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP124_ARATH	2.2e-93	49.00	Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop...	[more]
PP178_ARATH	2.7e-35	28.33	Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop...	[more]
PP362_ARATH	3.3e-33	24.77	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN...	[more]
PP413_ARATH	7.7e-30	29.71	Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidop...	[more]
PP213_ARATH	2.9e-29	26.05	Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG09g10520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW62_CUCSA	1.5e-112	60.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045740 PE=4 SV=1	[more]
F6GSY1_VITVI	3.0e-105	55.84	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07500 PE=4 SV=...	[more]
V4SYF8_9ROSI	1.3e-103	54.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018817mg PE=4 SV=1	[more]
A0A067K823_JATCU	4.8e-103	55.20	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11544 PE=4 SV=1	[more]
A0A061FUI6_THECC	1.7e-100	52.99	Plastid transcriptionally active 2 isoform 3 OS=Theobroma cacao GN=TCM_011951 PE...	[more]

BLAST of Cp4.1LG09g10520 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74850.1	1.2e-94	49.00	plastid transcriptionally active 2	[more]
AT2G31400.1	1.5e-36	28.33	genomes uncoupled 1	[more]
AT5G02860.1	1.9e-34	24.77	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G42310.1	4.3e-31	29.71	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G04760.1	1.6e-30	26.05	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Cp4.1LG09g10520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067140\|ref\|XP_008437858.1\|	6.6e-114	60.68	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic ...	[more]
gi\|659067138\|ref\|XP_008437850.1\|	6.6e-114	60.68	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic ...	[more]
gi\|449469490\|ref\|XP_004152453.1\|	2.1e-112	60.11	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic ...	[more]
gi\|778657681\|ref\|XP_011651334.1\|	2.1e-112	60.11	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic ...	[more]
gi\|297733858\|emb\|CBI15105.3\|	4.3e-105	55.84	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0009657	plastid organization
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0010467	gene expression
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008150	biological_process
cellular_component	GO:0009508	plastid chromosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g10520.1	Cp4.1LG09g10520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 313..338 score: 0.28coord: 274..303 score: 0.0064coord: 344..368 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 124..171 score: 7.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 189..247 score: 1.7E-6coord: 64..116 score: 7.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 274..305 score: 0.0024coord: 344..369 score: 3.2E-4coord: 128..161 score: 1.5E-8coord: 239..271 score: 4.5E-5coord: 43..73 score: 7.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 341..375 score: 8.385coord: 160..200 score: 8.451coord: 125..159 score: 12.375coord: 76..114 score: 9.602coord: 306..340 score: 7.739coord: 271..305 score: 10.643coord: 236..270 score: 9.383coord: 41..75 score: 9.219coord: 201..235 score: 7
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 128..301 score: 1.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 287..384 score: 5.7E-174coord: 32..251 score: 5.7E
None	No IPR available	PANTHER	PTHR24015:SF726	SUBFAMILY NOT NAMED	coord: 287..384 score: 5.7E-174coord: 32..251 score: 5.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g10520	Cucsa.098120	Cucumber (Gy14) v1	cgycpeB0201
Cp4.1LG09g10520	CmaCh13G009130	Cucurbita maxima (Rimu)	cmacpeB213
Cp4.1LG09g10520	CmoCh18G001110	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g10520	CmoCh13G009400	Cucurbita moschata (Rifu)	cmocpeB183
Cp4.1LG09g10520	Cla008319	Watermelon (97103) v1	cpewmB038
Cp4.1LG09g10520	Csa1G045740	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g10520	ClCG01G014190	Watermelon (Charleston Gray)	cpewcgB021
Cp4.1LG09g10520	CSPI01G08160	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g10520	Lsi02G003410	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g10520	MELO3C002229.2	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g10520	CsaV3_1G008120	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g10520	Bhi08G001192	Wax gourd	cpewgoB0045
Cp4.1LG09g10520	CsGy1G008060	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g10520	Carg07703	Silver-seed gourd	carcpeB1394
Cp4.1LG09g10520	Carg06700	Silver-seed gourd	carcpeB0694

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g10520	Cp4.1LG20g02190	Cucurbita pepo (Zucchini)	cpecpeB049

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g10520	Wax gourd	cpewgoB0024
Cp4.1LG09g10520	Wax gourd	cpewgoB0063
Cp4.1LG09g10520	Cucurbita pepo (Zucchini)	cpecpeB028
Cp4.1LG09g10520	Cucurbita pepo (Zucchini)	cpecpeB055
Cp4.1LG09g10520	Cucumber (Gy14) v1	cgycpeB0553
Cp4.1LG09g10520	Cucurbita maxima (Rimu)	cmacpeB071
Cp4.1LG09g10520	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g10520	Cucurbita moschata (Rifu)	cmocpeB043
Cp4.1LG09g10520	Cucurbita moschata (Rifu)	cmocpeB082
Cp4.1LG09g10520	Wild cucumber (PI 183967)	cpecpiB020
Cp4.1LG09g10520	Cucumber (Chinese Long) v2	cpecuB025
Cp4.1LG09g10520	Bottle gourd (USVL1VR-Ls)	cpelsiB042
Cp4.1LG09g10520	Watermelon (Charleston Gray)	cpewcgB047
Cp4.1LG09g10520	Watermelon (Charleston Gray)	cpewcgB050
Cp4.1LG09g10520	Watermelon (97103) v1	cpewmB060
Cp4.1LG09g10520	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g10520	Melon (DHL92) v3.5.1	cpemeB035
Cp4.1LG09g10520	Cucumber (Gy14) v2	cgybcpeB012
Cp4.1LG09g10520	Cucumber (Gy14) v2	cgybcpeB586
Cp4.1LG09g10520	Melon (DHL92) v3.6.1	cpemedB030
Cp4.1LG09g10520	Melon (DHL92) v3.6.1	cpemedB040
Cp4.1LG09g10520	Silver-seed gourd	carcpeB0363
Cp4.1LG09g10520	Silver-seed gourd	carcpeB0506
Cp4.1LG09g10520	Silver-seed gourd	carcpeB0870
Cp4.1LG09g10520	Cucumber (Chinese Long) v3	cpecucB0023
Cp4.1LG09g10520	Cucumber (Chinese Long) v3	cpecucB0048