Cp4.1LG09g10360 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g10360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RING-H2 finger ATL48-like protein
Location	Cp4.1LG09 : 9112537 .. 9113977 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTGGTTAAAATTAGTGTTGAAAATTGAATAGGGTCAAAACTACAAGAGGTTTGACTCATGAGGGGTAAAAATTTGATTTTTTCTCTCTAAATTTTTTTATGATAAAAAAATAAGTAGTTGAATGGGCCCCCGACCCGCTAATTCGTGCCCCATTTACATCCACACCCGGTCGAACTTGTACGAGAGGAGGAAGACAAAGGCCACGGCGTCTACCTCTTTTTCTTTCCAAACCAATTCTTCCTCAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTTTTGATTCAGATTCTTCTCTCTTCCCACGTCGTTCAATTAGAAACGCCATCACAATTCACAGATATGAGCTCCGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCCTCGGTAATTTCCCCAATTTCTTCCTCCTTAGTATTGTTACTTCTTCAATTTCTTAGGATACTCTTTTCCGCCGTTGAATTATGTCATAGGGTTGTATTGGACGTGCTGAATTCTGGGTATTTCAGAATTTTCGAAATTGTTGCCCAGCATGTTCTTTGGAATGGGGGACTATAATTACAGATACTCTGTGAATATGTATTGGTTACTGTTGTACTCACAGGCCTTCATGTTGTTGAACTAGCGAAAATCAATTTAATAATACGAAAATTTGAAGCCGGATTTATTGAAGAATTAAGCTTTTTTTCCCCCAATTATGTATCCACAAGCATGGAGATTTTAAGCAGATTTTAGGAAGGGGGAGATTTTCCTAGCTCCAAAGAGTTTCATTCCGTGCTTTCACATGATTGAAACTGCTTATGAGAGTCAATGGTTGTTAATTCTAGGCTATAGAGCAATATATTTTCTTTTTCTGGGTGGCAATGGTGCTGCCGTGCTATGTGTTTCCCTCTTTTGGTTTATGTTTGATAGAATTTAATATCAGGTGCACTTGTCACTGCTGGAGTCCTCACTGCTGGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTACTACGGCGATAATCCCTGGCGGCCGAGTTAATATGTCAATGTTCTGCTTTTTATGATTTGCTTTTCAGGATCTTGTTTTACGTCGAGAGATTTCGGTGACATTGAAAGATTGTTGTCTTTCAATCTTTCTTCAAGTATAACAACAGGTCATTCGGTGATTTGATGACAATATTTATGTTATGTATTCATTCCTAGGGCATAGATGAGTTGCCTTCAAAGATATAAATCTTGGTGTTATGTTGGAATATTGAAATTATAAGAGAAAATCATTGGGTATATTCTCAATATCTTCATCTTATTTTGATGAGCGTCCATATATTATATATATGCTTCTGTTGTCTA

mRNA sequence

TTGTGGTTAAAATTAGTGTTGAAAATTGAATAGGGTCAAAACTACAAGAGGTTTGACTCATGAGGGGTAAAAATTTGATTTTTTCTCTCTAAATTTTTTTATGATAAAAAAATAAGTAGTTGAATGGGCCCCCGACCCGCTAATTCGTGCCCCATTTACATCCACACCCGGTCGAACTTGTACGAGAGGAGGAAGACAAAGGCCACGGCGTCTACCTCTTTTTCTTTCCAAACCAATTCTTCCTCAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTTTTGATTCAGATTCTTCTCTCTTCCCACGTCGTTCAATTAGAAACGCCATCACAATTCACAGATATGAGCTCCGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCCTCGGTGCACTTGTCACTGCTGGAGTCCTCACTGCTGGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTACTACGGCGATAATCCCTGGCGGCCGAGTTAATATGTCAATGTTCTGCTTTTTATGATTTGCTTTTCAGGATCTTGTTTTACGTCGAGAGATTTCGGTGACATTGAAAGATTGTTGTCTTTCAATCTTTCTTCAAGTATAACAACAGGTCATTCGGTGATTTGATGACAATATTTATGTTATGTATTCATTCCTAGGGCATAGATGAGTTGCCTTCAAAGATATAAATCTTGGTGTTATGTTGGAATATTGAAATTATAAGAGAAAATCATTGGGTATATTCTCAATATCTTCATCTTATTTTGATGAGCGTCCATATATTATATATATGCTTCTGTTGTCTA

Coding sequence (CDS)

ATGAGCTCCGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCCTCGGTGCACTTGTCACTGCTGGAGTCCTCACTGCTGGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTACTACGGCGATAATCCCTGGCGGCCGAGTTAA

Protein sequence

MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRPS

Homology

[Close]

BLAST of Cp4.1LG09g10360 vs. Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-32
Identity = 66/80 (82.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSS EP++++ F EKKR RNPLVPLGAL+TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWR 81
          GATVALMVGT +YYGDNPW+
Sbjct: 61 GATVALMVGTGYYYGDNPWK 80

[Close]

BLAST of Cp4.1LG09g10360 vs. Swiss-Prot
Match: HIG2A_HUMAN (HIG1 domain family member 2A, mitochondrial OS=Homo sapiens GN=HIGD2A PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-09
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 10 EFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMV 69
          E FV K R  NP+VP+G L TA  LT GL SF +GNSQ  Q++MR R+  QG TV A+++
Sbjct: 37 EKFVRKTR-ENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILL 96

Query: 70 GTA 72
          G A
Sbjct: 97 GLA 98

[Close]

BLAST of Cp4.1LG09g10360 vs. Swiss-Prot
Match: HIG2B_HUMAN (Putative HIG1 domain family member 2B OS=Homo sapiens GN=HIGD2B PE=5 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-08
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 3  SGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGA 62
          S      E F+ K R  NP+VP+G L TA VLT GL  F QGNSQ  +++M  ++  QG 
Sbjct: 30 SNPEGFKEKFLRKTR-ENPVVPIGFLCTAAVLTNGLYCFHQGNSQCSRLMMHTQIAAQGF 89

Query: 63 TV-ALMVGTA 72
          T+ A+++G A
Sbjct: 90 TIAAILLGLA 98

[Close]

BLAST of Cp4.1LG09g10360 vs. Swiss-Prot
Match: HIG2A_MOUSE (HIG1 domain family member 2A OS=Mus musculus GN=Higd2a PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 3  SGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGA 62
          S      E F+ K R  NP+VP+G L TA  LT GL  F +G S   Q++MR R+  QG 
Sbjct: 30 SNPEGFKEKFIRKTR-ENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGF 89

Query: 63 T-VALMVGTA 72
          T VA+++G A
Sbjct: 90 TVVAILLGLA 98

[Close]

BLAST of Cp4.1LG09g10360 vs. Swiss-Prot
Match: RCF1_YARLI (Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RCF1 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-07
Identity = 27/58 (46.55%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 21 PLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGDNP 79
          PLVPLG L T G L     + R GN +    +  ARV  QG TVA ++G A YYG +P
Sbjct: 34 PLVPLGCLATCGALILSARALRVGNKRQANRMFFARVAFQGLTVAALIGGAMYYGQDP 91

[Close]

BLAST of Cp4.1LG09g10360 vs. TrEMBL
Match: A0A0A0LTF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045920 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.8e-35
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSS EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYG+NPWR S
Sbjct: 61 GATVALMVGTAYYYGENPWRSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. TrEMBL
Match: A0A0D2RPW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G297100 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-32
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSSGEP+ +E   EKKR RNPLVP+GAL+TAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1  MSSGEPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYGDNPW+ S
Sbjct: 61 GATVALMVGTAYYYGDNPWKSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. TrEMBL
Match: I3NMV2_GOSHI (Uncharacterized protein OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-32
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSSGEP+ +E   EKKR RNPLVP+GAL+TAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1  MSSGEPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYGDNPW+ S
Sbjct: 61 GATVALMVGTAYYYGDNPWKSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. TrEMBL
Match: A0A0B0NS34_GOSAR (RING-H2 finger ATL48-like protein OS=Gossypium arboreum GN=F383_07490 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-32
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSSGEP+ +E   EKKR RNPLVP+GAL+TAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1  MSSGEPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYGDNPW+ S
Sbjct: 61 GATVALMVGTAYYYGDNPWKSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. TrEMBL
Match: I3NMV7_GOSHI (Uncharacterized protein OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-31
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSS EP+ +E   EKKR RNPLVP+GAL+TAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1  MSSREPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYGDNPW+ S
Sbjct: 61 GATVALMVGTAYYYGDNPWKSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. TAIR10
Match: AT3G48030.1 (AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-33
Identity = 66/80 (82.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSS EP++++ F EKKR RNPLVPLGAL+TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWR 81
          GATVALMVGT +YYGDNPW+
Sbjct: 61 GATVALMVGTGYYYGDNPWK 80

[Close]

BLAST of Cp4.1LG09g10360 vs. NCBI nr
Match: gi|449469515|ref|XP_004152465.1| (PREDICTED: RING-H2 finger protein ATL48 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSS EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYG+NPWR S
Sbjct: 61 GATVALMVGTAYYYGENPWRSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. NCBI nr
Match: gi|659067192|ref|XP_008438139.1| (PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSS EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTAFYYG+NPWR S
Sbjct: 61 GATVALMVGTAFYYGENPWRSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. NCBI nr
Match: gi|823215372|ref|XP_012440443.1| (PREDICTED: RING-H2 finger protein ATL48 [Gossypium raimondii])

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-32
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSSGEP+ +E   EKKR RNPLVP+GAL+TAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1  MSSGEPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYGDNPW+ S
Sbjct: 61 GATVALMVGTAYYYGDNPWKSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. NCBI nr
Match: gi|315307482|gb|ADU04143.1| (hypothetical protein [Gossypium hirsutum])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-31
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          MSS EP+ +E   EKKR RNPLVP+GAL+TAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1  MSSREPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 61 GATVALMVGTAFYYGDNPWRPS 83
          GATVALMVGTA+YYGDNPW+ S
Sbjct: 61 GATVALMVGTAYYYGDNPWKSS 82

[Close]

BLAST of Cp4.1LG09g10360 vs. NCBI nr
Match: gi|1009131098|ref|XP_015882656.1| (PREDICTED: RING-H2 finger protein ATL48 [Ziziphus jujuba])

HSP 1 Score: 141.0 bits (354), Expect = 9.5e-31
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1  MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60
          M S EPN +EFF EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 4  MGSDEPNFEEFFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 63

Query: 61 GATVALMVGTAFYYGDNPWR 81
          GATVALMVGTA+YYG+NPW+
Sbjct: 64 GATVALMVGTAYYYGENPWK 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g10360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL48_ARATH	3.8e-32	82.50	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2	[more]
HIG2A_HUMAN	2.1e-09	53.97	HIG1 domain family member 2A, mitochondrial OS=Homo sapiens GN=HIGD2A PE=1 SV=1	[more]
HIG2B_HUMAN	8.6e-08	44.29	Putative HIG1 domain family member 2B OS=Homo sapiens GN=HIGD2B PE=5 SV=1	[more]
HIG2A_MOUSE	1.9e-07	44.29	HIG1 domain family member 2A OS=Mus musculus GN=Higd2a PE=3 SV=1	[more]
RCF1_YARLI	4.3e-07	46.55	Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain ...	[more]

BLAST of Cp4.1LG09g10360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTF8_CUCSA	9.8e-35	91.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045920 PE=4 SV=1	[more]
A0A0D2RPW0_GOSRA	2.7e-32	85.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G297100 PE=4 SV=1	[more]
I3NMV2_GOSHI	2.7e-32	85.37	Uncharacterized protein OS=Gossypium hirsutum PE=4 SV=1	[more]
A0A0B0NS34_GOSAR	2.7e-32	85.37	RING-H2 finger ATL48-like protein OS=Gossypium arboreum GN=F383_07490 PE=4 SV=1	[more]
I3NMV7_GOSHI	2.3e-31	84.15	Uncharacterized protein OS=Gossypium hirsutum PE=4 SV=1	[more]

BLAST of Cp4.1LG09g10360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48030.1	2.2e-33	82.50	hypoxia-responsive family protein / zinc finger (C3HC4-type RING fin...	[more]

BLAST of Cp4.1LG09g10360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469515\|ref\|XP_004152465.1\|	1.4e-34	91.46	PREDICTED: RING-H2 finger protein ATL48 [Cucumis sativus]	[more]
gi\|659067192\|ref\|XP_008438139.1\|	1.8e-34	91.46	PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]	[more]
gi\|823215372\|ref\|XP_012440443.1\|	3.8e-32	85.37	PREDICTED: RING-H2 finger protein ATL48 [Gossypium raimondii]	[more]
gi\|315307482\|gb\|ADU04143.1\|	3.3e-31	84.15	hypothetical protein [Gossypium hirsutum]	[more]
gi\|1009131098\|ref\|XP_015882656.1\|	9.5e-31	83.75	PREDICTED: RING-H2 finger protein ATL48 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007667	Hypoxia_induced_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g10360.1	Cp4.1LG09g10360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 20..69 score: 5.3
IPR007667	Hypoxia induced protein, domain	PROFILE	PS51503	HIG1	coord: 1..82 score: 21
None	No IPR available	PANTHER	PTHR12297	HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED	coord: 6..80 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g10360	Cucsa.098270	Cucumber (Gy14) v1	cgycpeB0201
Cp4.1LG09g10360	CmaCh18G001510	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g10360	CmoCh18G001200	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g10360	Csa1G045920	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g10360	MELO3C002246	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g10360	ClCG01G014050	Watermelon (Charleston Gray)	cpewcgB021
Cp4.1LG09g10360	CSPI01G08310	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g10360	Lsi02G003540	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g10360	MELO3C002246.2	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g10360	CsaV3_1G008300	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g10360	Bhi08G001291	Wax gourd	cpewgoB0046
Cp4.1LG09g10360	Carg06711	Silver-seed gourd	carcpeB0694

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g10360	Cucurbita pepo (Zucchini)	cpecpeB028
Cp4.1LG09g10360	Cucurbita pepo (Zucchini)	cpecpeB049
Cp4.1LG09g10360	Cucurbita pepo (Zucchini)	cpecpeB055
Cp4.1LG09g10360	Cucumber (Gy14) v1	cgycpeB0553
Cp4.1LG09g10360	Cucurbita maxima (Rimu)	cmacpeB071
Cp4.1LG09g10360	Cucurbita maxima (Rimu)	cmacpeB213
Cp4.1LG09g10360	Cucurbita moschata (Rifu)	cmocpeB043
Cp4.1LG09g10360	Cucurbita moschata (Rifu)	cmocpeB082
Cp4.1LG09g10360	Cucurbita moschata (Rifu)	cmocpeB183
Cp4.1LG09g10360	Wild cucumber (PI 183967)	cpecpiB020
Cp4.1LG09g10360	Cucumber (Chinese Long) v2	cpecuB025
Cp4.1LG09g10360	Bottle gourd (USVL1VR-Ls)	cpelsiB042
Cp4.1LG09g10360	Watermelon (Charleston Gray)	cpewcgB047
Cp4.1LG09g10360	Watermelon (Charleston Gray)	cpewcgB050
Cp4.1LG09g10360	Watermelon (97103) v1	cpewmB038
Cp4.1LG09g10360	Watermelon (97103) v1	cpewmB060
Cp4.1LG09g10360	Melon (DHL92) v3.5.1	cpemeB035
Cp4.1LG09g10360	Cucumber (Gy14) v2	cgybcpeB012
Cp4.1LG09g10360	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g10360	Cucumber (Gy14) v2	cgybcpeB586
Cp4.1LG09g10360	Melon (DHL92) v3.6.1	cpemedB022
Cp4.1LG09g10360	Melon (DHL92) v3.6.1	cpemedB030
Cp4.1LG09g10360	Melon (DHL92) v3.6.1	cpemedB040
Cp4.1LG09g10360	Silver-seed gourd	carcpeB0363
Cp4.1LG09g10360	Silver-seed gourd	carcpeB0506
Cp4.1LG09g10360	Silver-seed gourd	carcpeB0870
Cp4.1LG09g10360	Silver-seed gourd	carcpeB1394
Cp4.1LG09g10360	Cucumber (Chinese Long) v3	cpecucB0023
Cp4.1LG09g10360	Cucumber (Chinese Long) v3	cpecucB0048
Cp4.1LG09g10360	Cucumber (Chinese Long) v3	cpecucB0049
Cp4.1LG09g10360	Wax gourd	cpewgoB0024
Cp4.1LG09g10360	Wax gourd	cpewgoB0063