Cp4.1LG09g10000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g10000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG09 : 8874795 .. 8875462 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACAAAAAGGGGCTCTCCTCTTCTCAAACATTCATCCCCTCGCAAAATCAAACGCCGGTGAAGCCTCAAAATCTCACCCAAGATTTTAAAGCATCACCAAACGCAAGACCAGAAAAATGGCGAACAAGATGATCGCAATGCTTTTAATGTGCACTCTCGTCGTCGCCGCTCTGCAACTCCCCGCCGCCGCCACCACCACCGCCACCGACGCTGATATCGTCGAGGTGGCGGAGGCCAAATTTGACGCGAAATTCAGGTCTTGCTACAGACATTGCGAGAAGGAGTGCATCGACAATGGCAGCGGCCAAAGCTTCTGCGAAGTTAAATGCGACGAAGATTGCGGTGACAAGGAAGTTGCCGGTAATCTCTCTTCCAATAATTAATTTTTTTTTCTCCTTTTATTAATTAATTTGAATTATTTTATTTGTTTTACAGATAGGCTGCATCTCGATTTGAATTAAATAATGGAGGACAAAAGCAAGAAGATGAAGAGCTTTCCAGAGAGTGTATTTATTTTATAATGTGACTTTAATATTTCAATTTATAAAAATTTAAAAAAATTGTGTTATTGATATTTATTTTTATTCATTAAGAAAATTAATTCTAATTGAGAGAACTTAAAAAGTAATTTATAATATGTTTGAGAAATTTTAAAAATTTTAGATAA

mRNA sequence

CTACAAAAAGGGGCTCTCCTCTTCTCAAACATTCATCCCCTCGCAAAATCAAACGCCGGTGAAGCCTCAAAATCTCACCCAAGATTTTAAAGCATCACCAAACGCAAGACCAGAAAAATGGCGAACAAGATGATCGCAATGCTTTTAATGTGCACTCTCGTCGTCGCCGCTCTGCAACTCCCCGCCGCCGCCACCACCACCGCCACCGACGCTGATATCGTCGAGGTGGCGGAGGCCAAATTTGACGCGAAATTCAGGTCTTGCTACAGACATTGCGAGAAGGAGTGCATCGACAATGGCAGCGGCCAAAGCTTCTGCGAAGTTAAATGCGACGAAGATTGCGGTGACAAGGAAGTTGCCGATAGGCTGCATCTCGATTTGAATTAAATAATGGAGGACAAAAGCAAGAAGATGAAGAGCTTTCCAGAGAGTGTATTTATTTTATAATGTGACTTTAATATTTCAATTTATAAAAATTTAAAAAAATTGTGTTATTGATATTTATTTTTATTCATTAAGAAAATTAATTCTAATTGAGAGAACTTAAAAAGTAATTTATAATATGTTTGAGAAATTTTAAAAATTTTAGATAA

Coding sequence (CDS)

ATGGCGAACAAGATGATCGCAATGCTTTTAATGTGCACTCTCGTCGTCGCCGCTCTGCAACTCCCCGCCGCCGCCACCACCACCGCCACCGACGCTGATATCGTCGAGGTGGCGGAGGCCAAATTTGACGCGAAATTCAGGTCTTGCTACAGACATTGCGAGAAGGAGTGCATCGACAATGGCAGCGGCCAAAGCTTCTGCGAAGTTAAATGCGACGAAGATTGCGGTGACAAGGAAGTTGCCGATAGGCTGCATCTCGATTTGAATTAA

Protein sequence

MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDNGSGQSFCEVKCDEDCGDKEVADRLHLDLN

Homology

[Close]

BLAST of Cp4.1LG09g10000 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 43 DAKFRSCYRHCEKECIDNGSGQSFCEVKCDEDCGDKEVADRL 85
          +A+F+ CY  C KEC D G+G +FCE+KCD DC  K+V ++L
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of Cp4.1LG09g10000 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-19
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MANKMIA+ LMC +VVAALQ        A   D+ +  EAKFDAK++SC+  CEKEC+  
Sbjct: 1  MANKMIALFLMCIVVVAALQF-----ANANKEDVAKY-EAKFDAKYKSCFETCEKECLRY 60

Query: 61 GSGQSFCEVKCDEDCGDKEVADRLHLDLN 90
          GSGQS+CEVKCDEDC +KE AD+LH++L+
Sbjct: 61 GSGQSYCEVKCDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Cp4.1LG09g10000 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MA KM+A+ LMC +VVA LQ        A + D V   EAKFDAK++SCY  CEKEC+ N
Sbjct: 1  MAKKMMAVFLMCIVVVATLQF-----VMANEEDGVTKYEAKFDAKYKSCYETCEKECLRN 60

Query: 61 GS-GQSFCEVKCDEDCGDKEVADRLHLDLN 90
           + G+SFCEVKCDEDC +KE AD+LH++L+
Sbjct: 61 DTNGESFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Cp4.1LG09g10000 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MA KM+A+ LMC +VV +LQ       TA     V   EAKFDAK+++C+  CEKECI+ 
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQF-----ATANKEYEVASYEAKFDAKYKACFVTCEKECIER 60

Query: 61 GSGQSFCEVKCDEDCGDKEVADRLHL 87
          GSG S+CEVKCDEDCG KE AD+LH+
Sbjct: 61 GSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Cp4.1LG09g10000 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-15
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MA KM+ +LL+C +++A L+          D       E+KFDA+++SCY  CEKEC+ N
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDK-----YESKFDARYKSCYESCEKECLTN 60

Query: 61 G-SGQSFCEVKCDEDCGDKEVADRLHLDLN 90
          G +GQS+CEVKCDEDC +KEVAD+LH+++N
Sbjct: 61 GKNGQSYCEVKCDEDCDEKEVADKLHVEVN 85

[Close]

BLAST of Cp4.1LG09g10000 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.4e-15
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 4  KMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDNGS- 63
          KM+ +LL+C +V+AAL+          D       E+KFDAK+++CY  CEKEC++NG+ 
Sbjct: 5  KMMGVLLICIVVMAALEFSIVNGEEKEDK-----YESKFDAKYKTCYESCEKECLENGNN 64

Query: 64 GQSFCEVKCDEDCGDKEVADRLHLD 88
          GQSFCEVKCDEDCG+KE AD+LH++
Sbjct: 65 GQSFCEVKCDEDCGEKESADKLHIN 84

[Close]

BLAST of Cp4.1LG09g10000 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.5e-21
Identity = 55/89 (61.80%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MA KMIA+ LMC +VVAALQ       +A   D V   EAKFDAK++SC++ CEKEC++N
Sbjct: 1  MAKKMIALFLMCIVVVAALQF-----ASANKEDEVAKYEAKFDAKYKSCFKTCEKECLEN 60

Query: 61 GSGQSFCEVKCDEDCGDKEVADRLHLDLN 90
          GSGQS+CEVKCDEDC +KEVAD+LH++L+
Sbjct: 61 GSGQSYCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of Cp4.1LG09g10000 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MANKMIA+ LMC +VVAALQ        A   D+ +  EAKFDAK++SC+  CEKEC+  
Sbjct: 1  MANKMIALFLMCIVVVAALQF-----ANANKEDVAKY-EAKFDAKYKSCFETCEKECLRY 60

Query: 61 GSGQSFCEVKCDEDCGDKEVADRLHLDLN 90
          GSGQS+CEVKCDEDC +KE AD+LH++L+
Sbjct: 61 GSGQSYCEVKCDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Cp4.1LG09g10000 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-17
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MA KM+A+ LMC +VVA LQ        A + D V   EAKFDAK++SCY  CEKEC+ N
Sbjct: 1  MAKKMMAVFLMCIVVVATLQF-----VMANEEDGVTKYEAKFDAKYKSCYETCEKECLRN 60

Query: 61 GS-GQSFCEVKCDEDCGDKEVADRLHLDLN 90
           + G+SFCEVKCDEDC +KE AD+LH++L+
Sbjct: 61 DTNGESFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Cp4.1LG09g10000 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MA KM+A+ LMC +VV +LQ       TA     V   EAKFDAK+++C+  CEKECI+ 
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQF-----ATANKEYEVASYEAKFDAKYKACFVTCEKECIER 60

Query: 61 GSGQSFCEVKCDEDCGDKEVADRLHL 87
          GSG S+CEVKCDEDCG KE AD+LH+
Sbjct: 61 GSGHSYCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Cp4.1LG09g10000 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATTTATDADIVEVAEAKFDAKFRSCYRHCEKECIDN 60
          MA KM+A+ LMC +VVA LQ       TA   D V   EAKFDAK+++C+  CEKEC++ 
Sbjct: 1  MAKKMMAVFLMCIVVVATLQF-----ATANKEDEVANYEAKFDAKYKACFVICEKECVER 60

Query: 61 GSGQSFCEVKCDEDCGDKEVADRLHLDLN 90
          G G S+CEVKCDEDCG KE AD+L + L+
Sbjct: 61 GGGHSYCEVKCDEDCGAKEAADKLGIILH 84

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g10000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALL6_OLEEU	1.2e-07	52.38	Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1	[more]

BLAST of Cp4.1LG09g10000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA7_CUCSA	2.2e-19	59.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1	[more]
A0A0A0K9Z9_CUCSA	2.6e-17	56.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1	[more]
A0A0A0KDP7_CUCSA	1.3e-16	56.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]
A0A0A0KFH6_CUCSA	3.2e-15	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1	[more]
A0A0A0KCI6_CUCSA	9.4e-15	52.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g10000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g10000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114221\|ref\|XP_008456958.1\|	2.5e-21	61.80	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|449457470\|ref\|XP_004146471.1\|	3.1e-19	59.55	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|700191316\|gb\|KGN46520.1\|	3.8e-17	56.67	hypothetical protein Csa_6G106720 [Cucumis sativus]	[more]
gi\|449445523\|ref\|XP_004140522.1\|	1.9e-16	56.98	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|659119712\|ref\|XP_008459802.1\|	4.2e-16	55.06	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g10000.1	Cp4.1LG09g10000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 44..85 score: 6.7
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 49..85 score: 3.6
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 43..84 score: 1.57
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..85 score: 3.2
None	No IPR available	PANTHER	PTHR35632:SF1	SUBFAMILY NOT NAMED	coord: 1..85 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g10000	CmaCh18G001940	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g10000	CmoCh18G001560	Cucurbita moschata (Rifu)	cmocpeB377

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g10000	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g10000	Cucurbita pepo (Zucchini)	cpecpeB045
Cp4.1LG09g10000	Cucumber (Gy14) v1	cgycpeB0201
Cp4.1LG09g10000	Cucurbita maxima (Rimu)	cmacpeB214
Cp4.1LG09g10000	Cucurbita moschata (Rifu)	cmocpeB184
Cp4.1LG09g10000	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g10000	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g10000	Watermelon (Charleston Gray)	cpewcgB026
Cp4.1LG09g10000	Watermelon (Charleston Gray)	cpewcgB036
Cp4.1LG09g10000	Watermelon (97103) v1	cpewmB025
Cp4.1LG09g10000	Watermelon (97103) v1	cpewmB033
Cp4.1LG09g10000	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g10000	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g10000	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g10000	Silver-seed gourd	carcpeB0694
Cp4.1LG09g10000	Silver-seed gourd	carcpeB1396
Cp4.1LG09g10000	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g10000	Wax gourd	cpewgoB0046