Cp4.1LG09g09890 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g09890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	WD-repeat protein
Location	Cp4.1LG09 : 8672001 .. 8672440 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGGTAAGTTGCTTGTTCAGACTTCTAGTGTAGTGAATCCTGCTCACATTGATTGAACTTAAAAATTTAAATATACTAATGCTCTTTTTGTAAAATCATGTTCCTGCCGTATACTCCAGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGTTATGGATCAATTTATAA

mRNA sequence

GCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGTTATGGATCAATTTATAA

Coding sequence (CDS)

GCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGTTATGGATCAATTTATAA

Protein sequence

AILTYYWVDDEMSVDRPIMSFISFIYGQFKFFIIFSHQITSFYFLLQLLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASRLWINL

Homology

[Close]

BLAST of Cp4.1LG09g09890 vs. TrEMBL
Match: E5GBV4_CUCME (WD-repeat protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS-PPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS PPKD+AI+GMHLFSKDE  + SR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVESR 122

[Close]

BLAST of Cp4.1LG09g09890 vs. TrEMBL
Match: A0A0A0LUB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050310 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.1e-17
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS-PPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGLIEVLNPLNGNLH+AISDNTDTS PPKD+AI+GMHLFSK+E  + SR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHIAISDNTDTSPPPKDEAIVGMHLFSKEELEVESR 122

[Close]

BLAST of Cp4.1LG09g09890 vs. TrEMBL
Match: A0A067EFB8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0141541mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDT-SPPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGL ++LNPLNG+L VAIS+  D+ + P+DD I+G+HLF +     +SR
Sbjct: 1   LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 56

[Close]

BLAST of Cp4.1LG09g09890 vs. TrEMBL
Match: A0A067EBL1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0141541mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDT-SPPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGL ++LNPLNG+L VAIS+  D+ + P+DD I+G+HLF +     +SR
Sbjct: 1   LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 56

[Close]

BLAST of Cp4.1LG09g09890 vs. TrEMBL
Match: A0A067EBY3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0141541mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDT-SPPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGL ++LNPLNG+L VAIS+  D+ + P+DD I+G+HLF +     +SR
Sbjct: 1   LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 56

[Close]

BLAST of Cp4.1LG09g09890 vs. TAIR10
Match: AT1G29320.1 (AT1G29320.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAIS-DNTDTSPPKDDAIIGMHLFSK 95
           LLAVARK+G +EV+NP NG+LH + S    D   P+D+ I  +HLF K
Sbjct: 67  LLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRK 114

[Close]

BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: gi|659067445|ref|XP_008439469.1| (PREDICTED: WD repeat-containing protein 74 isoform X2 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS-PPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS PPKD+AI+GMHLFSKDE  + SR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVESR 122

[Close]

BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: gi|659067443|ref|XP_008439461.1| (PREDICTED: WD repeat-containing protein 74 isoform X1 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS-PPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS PPKD+AI+GMHLFSKDE  + SR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVESR 122

[Close]

BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: gi|700209296|gb|KGN64392.1| (hypothetical protein Csa_1G050310 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS-PPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGLIEVLNPLNGNLH+AISDNTDTS PPKD+AI+GMHLFSK+E  + SR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHIAISDNTDTSPPPKDEAIVGMHLFSKEELEVESR 122

[Close]

BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: gi|778658047|ref|XP_011652016.1| (PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 74 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTS-PPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGLIEVLNPLNGNLH+AISDNTDTS PPKD+AI+GMHLFSK+E  + SR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHIAISDNTDTSPPPKDEAIVGMHLFSKEELEVESR 122

[Close]

BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: gi|641833579|gb|KDO52589.1| (hypothetical protein CISIN_1g0141541mg, partial [Citrus sinensis])

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-08
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDT-SPPKDDAIIGMHLFSKDESALASR 103
           LLAVARKNGL ++LNPLNG+L VAIS+  D+ + P+DD I+G+HLF +     +SR
Sbjct: 1   LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 56

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g09890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g09890 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBV4_CUCME	1.9e-17	87.50	WD-repeat protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LUB9_CUCSA	7.1e-17	83.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050310 PE=4 SV=1	[more]
A0A067EFB8_CITSI	4.6e-08	57.14	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0141541mg PE=4 ...	[more]
A0A067EBL1_CITSI	4.6e-08	57.14	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0141541mg PE=4 ...	[more]
A0A067EBY3_CITSI	4.6e-08	57.14	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0141541mg PE=4 ...	[more]

BLAST of Cp4.1LG09g09890 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29320.1	2.9e-06	52.08	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Cp4.1LG09g09890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067445\|ref\|XP_008439469.1\|	2.7e-17	87.50	PREDICTED: WD repeat-containing protein 74 isoform X2 [Cucumis melo]	[more]
gi\|659067443\|ref\|XP_008439461.1\|	2.7e-17	87.50	PREDICTED: WD repeat-containing protein 74 isoform X1 [Cucumis melo]	[more]
gi\|700209296\|gb\|KGN64392.1\|	1.0e-16	83.93	hypothetical protein Csa_1G050310 [Cucumis sativus]	[more]
gi\|778658047\|ref\|XP_011652016.1\|	1.0e-16	83.93	PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 74 [Cucumis sativus...	[more]
gi\|641833579\|gb\|KDO52589.1\|	6.6e-08	57.14	hypothetical protein CISIN_1g0141541mg, partial [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g09890.1	Cp4.1LG09g09890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g09890	Silver-seed gourd	carcpeB0694
Cp4.1LG09g09890	Silver-seed gourd	carcpeB1396
Cp4.1LG09g09890	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g09890	Wax gourd	cpewgoB0044
Cp4.1LG09g09890	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g09890	Cucurbita pepo (Zucchini)	cpecpeB045
Cp4.1LG09g09890	Cucumber (Gy14) v1	cgycpeB1034
Cp4.1LG09g09890	Cucurbita maxima (Rimu)	cmacpeB214
Cp4.1LG09g09890	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g09890	Cucurbita moschata (Rifu)	cmocpeB184
Cp4.1LG09g09890	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g09890	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g09890	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g09890	Watermelon (Charleston Gray)	cpewcgB036
Cp4.1LG09g09890	Watermelon (97103) v1	cpewmB025
Cp4.1LG09g09890	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g09890	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g09890	Melon (DHL92) v3.6.1	cpemedB031