Cp4.1LG09g09870 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g09870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	WD repeat-containing 74
Location	Cp4.1LG09 : 8665851 .. 8670309 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCCTGAGTTCTGAGAAAGAATTTCCGAAGTTTTCTTCCCTTTTGATATATTGTATTCTTCATTGTTTAGTAGGGGCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGGTAAGTTGCTTGTTCAGACTTCTAGTGTAGTGAATCCTGCTCACATTGATTGAACTTAAAAATTTAAATATACTAATGCTCTTTTTGTAAAATCATGTTCCTGCCGTATACTCCAGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGTTATGGATCAATTTATAATTTATGAGCATGTTATTTTGTAATTTGATAAAAGTGCAAAAGGTATCATCGTGTTGTTAATGATGAAATATTAAAATTTTCTTAAACTAGCTGGCTACTTCAACAAGACATCTATGCTGAATTCCTCTTAGTTTGATCATTCATTTTTAGGCGTTGCACCTTGCTTTCGTGTACAAAAAAAGGAAATGCGAGCATGAGGGCAATTGATTTTTCTAGCTCATCTTCAGACGATATCTCTACCAATCTTGTAAAAACGTGGAAAGTATGTGGTTCAGGTGATGTTTTGTGCTCTAAAGTCGATGGAAGTGAAACCCATGCATTGTTTGGAGGGTGAGTTAAGATCATGATTGAATTTAAGTATTATCTATACATTGGCACTAACAACCTTTACCTTGTATGCGCAGGAAGGGTGTTGAAGTCAATACATGGAATCTGGAACAGTGTACTAAGATTTGGACAGCAAAAGCAGTATGCTTTCAAGTTCTCCTTTGCATGTTTGTACAAAGCGATCAACATATTTCTACAGAATGTTTTTTGATTTCCTTTTGAAACATTTTGTTTTATTCAGCCAAAGAAGAACAGTCTTGGTATTTTCACACCAACTTGCTTCACATCCGTGACATTTCTTAGTAAAGATGACCATCGTAAATTTGCAGCTGGTACCAACAACCATCAGGTAATTCATAACAGTTTCTCATGGTATTAGTAATACAAGTTACAGAATAGGAAATAATAACACAAGTTGTAGAATTAACGGGAGTTTTAGAGAATTGAATAAATAAGTGTCTGATGTGGTCTTGGTTGCTATTTAAGTTTAATAATACTTCATTTTGAGCCTTTCAGAAAATTATTGATATCTGATTATCGGTGAAACGTTACAACTCTTGTACAATGTAACCTCTTTATTTTTAGTTTACACATCCATTATAAAAACCATTTATTTTGATGTATGAATCATATTACCGCTCTTTACTTCTTAAAACTATTTGTTTTTATTATTATTTTATGGGGGTGGGGGATTGGTCTTCTTTCTCATTCTATAACTGGAGTTTCTGATTAACCAACTCAGGTTCGATTGTATGACATCTCTGCTCAGAAGAGACCTGTTATCTCGTTTGATTTTCGAGAGACTCCTATTAAAGCCTTGGCTGAAGATGTAGATGGTAACACAATATTTGTGGGGAATGCAACTGGTGATCTTGCATCCTTTGATATTCGCAATGGTAAAATTTGTTGTGCTTGAGACAATGTTCTTTCTGATTTAATATTCTGGGCGTTCTATATTTTCATACAGTACTCTTGTTTCAGAAAAGATTGGCTGTTTTACGGGTTGGATCCCAATTGATGAGTACTACCCCAATAGTTTATTTAAAAGTTCTCATTCCACTGCATATTTTAGCATGCTTGAGATGTAGGTGATACAGTCATGGTGTCTTAAATATATAAATTATGTATGAGAATGGTGTACCAAGAAGAGTAGTCTTGACTGACAGCTACCTTCATTAGAAAGGAGAAAACAAATATTTTTCTTTAGACCAGGAATTCCCAGTAGCGTTCAAACTTTTTATTTCACCTTTATTCTGTCTGTTGGGAGCTATTTGATTGTTCCTTGATTGTCGTGAGTTTTTATTGATTTTGTTGGACTATCTCTATGATCTGTAAATAGCAGTTGATTAAAGTTTTTATTAATGGAGTAAATTTATGTGCCTTATTTTCTTTGCTTGACTCGTTTCTCACAGGAAAGCTATTGGGTTGCTTCTTGGGGAAATGTTCTGGCAGCATAAGGTCCATCGCCAGGCATCCAGAGTTCCCGATCATTGCATCATGTGGTGGGATATATTTTCCAATATGACAATCATCTAGCATTTCTCTGTCTGCTATACACATGGAAATCTTGTATTTTTACTAGGATTGTGTCTCTTTTTACATGTTTTGAAATATTCATATAAAAAAAAATCCTCTGCACAACGAGCCATACTCGTCTTTTATGCTAAAAAACTAGCATTTTTAGTACTTAATGTAAGTGGGTTGGTTAGGAAGAAACAGAATAATTAGTGTCACTTCAAACCTACCTATAGGCAATTCATTAAGTTGTGTTGAATCCAGTGGATAATGGAAGGATTAAAGGAGCCAAGATACAGTCAATAATTTGAGTGGCATCAATTCCATGAATGTATCCGGACTGCACTAAATATTAACTTTTTCCTTTTCTTCTTAGCTAGATTTATAAACTCAGATATACAAAACTGAGAATCAGAATAAGAACATATCATTTTCTTCAATGTGGAATCTACTTATGAGTGATGTTGAAATCTTTTTGCAGGACTTGATAGTTATGTTCGCTTCTGGGATATAAAGACAAGGCAACTTCTGTCTGCGGTAAGTTTTCATAATTCTAGTAAATAATAGGTTGTTTAGACGCATCATTCAGAATGAATGATGTAGAAGCAAGTTTTTCAGAAAATACTGGAAAGGACATTTTAGAAGAAGATAATGGTAGTCAATCTTATGGACTAATTTGCACCATTGTTGTGATTTAATTTATTGACTCGGAGCTATGAAGAAAAAAAAAAAAAAAGGCCATTTAGAGACAAATATAAGGTCTGATGGTTTAAAAGTATAGTTTAGAATTATCTTCCTAGTTGTTTAGAAGTTGTGCTGTTTAGATATGCATCCTGTCGGTCGATCACCAACATCCAATTTTGCAGTTGTTTTCTACAGAAGGGAGAATAATGAAAGGAAAATTTACTGTTCGAGTACAAAATTCTAAGCATGATCACTGATCTACTTAATAGCTTCCTAGAAAATGTAATGGGACCCTATGCATTAAAGTGGTTATATTTGATGTAGCCTACTGGATAGTACTCTTACTAAACTGAAGCCGAGTATTTCCAGCACTATATTCACATAATTCAGCTGGTACTTGCGTAAATATATTGCATGTTTGTAAAATCAGGGAGTCTATTTAATAATATGACAGAAAGAGAGAAAAAAAATTGCGTTTGATGCATAAATGTAAGCTGGGACAATATATCATATGATTATATTTGTCTTCATTTGCTTGCAGGTATTCCTAAAGCAGCATCTTAATGGTGTTGTCTTCGATTCCCATTTTGTTGGAGAAGGTTAGATTTGCTGATCCACACTTATCAAATTAATGTTTCGTAACAAAATCATCTTTCTATGTTGAGCTTGTTTTTAGGTTGTGCTGCATTAGTGCATTTGATTGACTTCCAACATAACTCTCCTAGGCTCCAAATGACTGATTGAAAGCCTATGATCTGTTCATTTGTTCTTTATCTCATTCATATCTGTCTCAGCAGACACAACACACTCTGCAGTAGAGTCAATCCAACAGGACATAGAGATAGGCCAAACCGTTAGCGAGGAGGAACACACGCCTCAGAAAAGAAAAAAGGCATCGAAAGAAGACGGTGAAGGCAAAAAGAGGAAGGGTGCAAGCAAAGAAAATAAAAAAAGCAAAAAGAAGTTGCATGGCGAAACCGAAAGTAAGCAGAGGTAGGAGTTCAAAATCTGATATTCTTTGTTCTTGGCAAAGCAGAAAGGTTAGTTCATGTTCTGATCTATTCAGTCTGCAGAGACTGTGGGAGATTAGAGGGTAAATGATAAAAGTTATTTATCTCACCAATGTATTAAATTTTGGCCCATATCATGATTTTTATGCGGGATGAAGTAGGTATGATTCCATTCGAAGTAGTTCAAGCACGTTCGACTCAAGTATCCCGTGTCAAATTTTATAATACTAGTAGTTAGAAGTATTTGAATATGATACCTATAATGTTTTAGATTAGCCCTCCATGTTTGAACTTTGTAACTTATGAGTTCGTCAATGAACAATTCAGTAAGTTCTTGAAATATTGTTTTTACTTCCTCCACAAAGTAAAATATAACACCTATTTGTATCTGTGAGTGCAATG

mRNA sequence

ATGAAGTTCCTGAGTTCTGAGAAAGAATTTCCGAAGTTTTCTTCCCTTTTGATATATTGTATTCTTCATTGTTTAGTAGGGGCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGCGTTGCACCTTGCTTTCGTGTACAAAAAAAGGAAATGCGAGCATGAGGGCAATTGATTTTTCTAGCTCATCTTCAGACGATATCTCTACCAATCTTGTAAAAACGTGGAAAGTATGTGGTTCAGGTGATGTTTTGTGCTCTAAAGTCGATGGAAGTGAAACCCATGCATTGTTTGGAGGGAAGGGTGTTGAAGTCAATACATGGAATCTGGAACAGTGTACTAAGATTTGGACAGCAAAAGCACCAAAGAAGAACAGTCTTGGTATTTTCACACCAACTTGCTTCACATCCGTGACATTTCTTAGTAAAGATGACCATCGTAAATTTGCAGCTGGTACCAACAACCATCAGGTTCGATTGTATGACATCTCTGCTCAGAAGAGACCTGTTATCTCGTTTGATTTTCGAGAGACTCCTATTAAAGCCTTGGCTGAAGATGTAGATGGTAACACAATATTTGTGGGGAATGCAACTGGTGATCTTGCATCCTTTGATATTCGCAATGGAAAGCTATTGGGTTGCTTCTTGGGGAAATGTTCTGGCAGCATAAGGTCCATCGCCAGGCATCCAGAGTTCCCGATCATTGCATCATGTGGACTTGATAGTTATGTTCGCTTCTGGGATATAAAGACAAGGCAACTTCTGTCTGCGGTATTCCTAAAGCAGCATCTTAATGGTGTTGTCTTCGATTCCCATTTTGTTGGAGAAGACACAACACACTCTGCAGTAGAGTCAATCCAACAGGACATAGAGATAGGCCAAACCGTTAGCGAGGAGGAACACACGCCTCAGAAAAGAAAAAAGGCATCGAAAGAAGACGGTGAAGGCAAAAAGAGGAAGGGTGCAAGCAAAGAAAATAAAAAAAGCAAAAAGAAGTTGCATGGCGAAACCGAAAGTAAGCAGAGGTAGGAGTTCAAAATCTGATATTCTTTGTTCTTGGCAAAGCAGAAAGGTTAGTTCATGTTCTGATCTATTCAGTCTGCAGAGACTGTGGGAGATTAGAGGGTAAATGATAAAAGTTATTTATCTCACCAATGTATTAAATTTTGGCCCATATCATGATTTTTATGCGGGATGAAGTAGGTATGATTCCATTCGAAGTAGTTCAAGCACGTTCGACTCAAGTATCCCGTGTCAAATTTTATAATACTAGTAGTTAGAAGTATTTGAATATGATACCTATAATGTTTTAGATTAGCCCTCCATGTTTGAACTTTGTAACTTATGAGTTCGTCAATGAACAATTCAGTAAGTTCTTGAAATATTGTTTTTACTTCCTCCACAAAGTAAAATATAACACCTATTTGTATCTGTGAGTGCAATG

Coding sequence (CDS)

ATGAAGTTCCTGAGTTCTGAGAAAGAATTTCCGAAGTTTTCTTCCCTTTTGATATATTGTATTCTTCATTGTTTAGTAGGGGCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGCGTTGCACCTTGCTTTCGTGTACAAAAAAAGGAAATGCGAGCATGAGGGCAATTGATTTTTCTAGCTCATCTTCAGACGATATCTCTACCAATCTTGTAAAAACGTGGAAAGTATGTGGTTCAGGTGATGTTTTGTGCTCTAAAGTCGATGGAAGTGAAACCCATGCATTGTTTGGAGGGAAGGGTGTTGAAGTCAATACATGGAATCTGGAACAGTGTACTAAGATTTGGACAGCAAAAGCACCAAAGAAGAACAGTCTTGGTATTTTCACACCAACTTGCTTCACATCCGTGACATTTCTTAGTAAAGATGACCATCGTAAATTTGCAGCTGGTACCAACAACCATCAGGTTCGATTGTATGACATCTCTGCTCAGAAGAGACCTGTTATCTCGTTTGATTTTCGAGAGACTCCTATTAAAGCCTTGGCTGAAGATGTAGATGGTAACACAATATTTGTGGGGAATGCAACTGGTGATCTTGCATCCTTTGATATTCGCAATGGAAAGCTATTGGGTTGCTTCTTGGGGAAATGTTCTGGCAGCATAAGGTCCATCGCCAGGCATCCAGAGTTCCCGATCATTGCATCATGTGGACTTGATAGTTATGTTCGCTTCTGGGATATAAAGACAAGGCAACTTCTGTCTGCGGTATTCCTAAAGCAGCATCTTAATGGTGTTGTCTTCGATTCCCATTTTGTTGGAGAAGACACAACACACTCTGCAGTAGAGTCAATCCAACAGGACATAGAGATAGGCCAAACCGTTAGCGAGGAGGAACACACGCCTCAGAAAAGAAAAAAGGCATCGAAAGAAGACGGTGAAGGCAAAAAGAGGAAGGGTGCAAGCAAAGAAAATAAAAAAAGCAAAAAGAAGTTGCATGGCGAAACCGAAAGTAAGCAGAGGTAG

Protein sequence

MKFLSSEKEFPKFSSLLIYCILHCLVGAILTYYWVDDEMSVDRPIMSFISFIYGQFKFFIIFSHQITSFYFLLQLLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASRRCTLLSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVEVNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDISAQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIRSIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVESIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKKLHGETESKQR

Homology

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BLAST of Cp4.1LG09g09870 vs. Swiss-Prot
Match: WDR74_BOVIN (WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-20
Identity = 89/301 (29.57%), Postives = 144/301 (47.84%), Query Frame = 1


Query: 132 TLLSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALF-GGK 191
           TL++C   G   +       +SSD +    V      G G V   + D +  H +  GGK
Sbjct: 99  TLITCVDSGILRVWTDKDKEASSDPVLELRV------GPG-VCRMRQDPARPHIVATGGK 158

Query: 192 GVEVNTWNLEQCTK-IWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRL 251
              +  W+L+   + ++ AK  + + L +  P     + FL +   +K    T  HQVR+
Sbjct: 159 ENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLPES--QKLVTCTGYHQVRV 218

Query: 252 YD-ISAQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKC 311
           YD  S Q+RPV+   + E P+ A+    +GN++ VGN  G LA  D+R G+LLGC  G  
Sbjct: 219 YDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLKG-L 278

Query: 312 SGSIRSIARHPEFPIIASCGLDSYVRFWDIKT-RQLLSAVFLKQHLNGVVFDSHFVGEDT 371
           +GS+R +  HP  P++ASCGLD  +R   I+  R L   V+LK  LN ++      G D 
Sbjct: 279 AGSVRGLQCHPSKPLLASCGLDRVLRIHRIRNPRGLEHKVYLKSQLNCLLLS----GRDN 338

Query: 372 THSAVESIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKKLHGETE 429
                +  Q+  ++    +E +      + A+K      ++   + + ++ KKK  G T 
Sbjct: 339 WEDEPQEPQEPNKVPSEDTETDELWASLEAAAKRKLPDWEQTQGALQARRRKKKRPGSTS 385

[Close]

BLAST of Cp4.1LG09g09870 vs. Swiss-Prot
Match: WDR74_HUMAN (WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-19
Identity = 91/305 (29.84%), Postives = 144/305 (47.21%), Query Frame = 1


Query: 126 LASRRCTLLSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHA 185
           LA    TL++C   G   +       +SSD +    V      G G V   + D +  H 
Sbjct: 93  LAQADGTLITCVDSGILRVWHDKDKDTSSDPLLELRV------GPG-VCRMRQDPAHPHV 152

Query: 186 LF-GGKGVEVNTWNLEQCTK-IWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTN 245
           +  GGK   +  W+L+   + ++ AK  + + L +  P     + FL     +K    T 
Sbjct: 153 VATGGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLPGS--QKLVTCTG 212

Query: 246 NHQVRLYD-ISAQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLG 305
            HQVR+YD  S Q+RPV+   + E P+ A+     GN++ VGN  G LA  D+R G+LLG
Sbjct: 213 YHQVRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLG 272

Query: 306 CFLGKCSGSIRSIARHPEFPIIASCGLDSYVRFWDIKT-RQLLSAVFLKQHLNGVVFDSH 365
           C  G  +GS+R +  HP  P++ASCGLD  +R   I+  R L   V+LK  LN ++    
Sbjct: 273 CLKG-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKVYLKSQLNCLLLS-- 332

Query: 366 FVGEDTTHSAVESIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKK 425
             G D      +  Q+  ++    +E +      + A+K    G ++   + + ++ KKK
Sbjct: 333 --GRDNWEDEPQEPQEPNKVPLEDTETDELWASLEAAAKRKLSGLEQPQGALQTRRRKKK 383

Query: 426 LHGET 427
             G T
Sbjct: 393 RPGST 383

[Close]

BLAST of Cp4.1LG09g09870 vs. Swiss-Prot
Match: WDR74_MOUSE (WD repeat-containing protein 74 OS=Mus musculus GN=Wdr74 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-19
Identity = 92/299 (30.77%), Postives = 141/299 (47.16%), Query Frame = 1


Query: 126 LASRRCTLLSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHA 185
           LA    TL++C   G   +   +   +SSD +    V      G G V   + D + TH 
Sbjct: 93  LAQADGTLITCVDSGILRVWCENDKEASSDPLLELKV------GPG-VCRMRQDPTHTHV 152

Query: 186 LFG-GKGVEVNTWNLEQCTK-IWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTN 245
           +   GK   +  W+L+   + ++ AK  + + L +  P       FL     +K    T 
Sbjct: 153 VATCGKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLPGS--QKLVTCTG 212

Query: 246 NHQVRLYD-ISAQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLG 305
            HQVR+YD +S Q+RPV+   + E P+ A+    +GN++ VGN  G LA  D R G+LLG
Sbjct: 213 YHQVRVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLG 272

Query: 306 CFLGKCSGSIRSIARHPEFPIIASCGLDSYVRFWDIKT-RQLLSAVFLKQHLNGVVFDSH 365
           C  G  +GS+R +  HP  P++ASCGLD  +R   I+  R L   V+LK  LN ++    
Sbjct: 273 CLKG-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRNPRGLEHKVYLKSQLNCLLLSGR 332

Query: 366 FVGEDTTHSAVESIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKK 421
              ED      E  Q   E  +T   +E        A ++  +  + +GA +  KK K+
Sbjct: 333 DNWEDEPQEPQEPNQVPSEDTET---DELWASLEAAAKRKLPDLDQTQGALQRRKKKKR 378

[Close]

BLAST of Cp4.1LG09g09870 vs. Swiss-Prot
Match: Y0555_DICDI (WD repeat-containing protein DDB_G0290555 OS=Dictyostelium discoideum GN=DDB_G0290555 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-15
Identity = 82/337 (24.33%), Postives = 160/337 (47.48%), Query Frame = 1


Query: 76  LAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDD-AIIGMHLFSKDESALASRRCTLL 135
           L VA +NGL++V               T T+P     A + +   +K +S  A+   + +
Sbjct: 92  LLVALENGLVDV--------------KTLTAPITTQLAPMNLPTLNKKKSPAAAAAASTV 151

Query: 136 SCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVEV 195
               K    +     + S S +++TNL        SG  +    + S     FGGK V +
Sbjct: 152 GKNNKSKQVIVEPVNTQSFSLNVATNL--------SGFAM----NPSNDKFAFGGKDVNL 211

Query: 196 NTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDISA 255
             W+LE+  K ++AK  K + L +  P     V +++ D   K   G++  +++ YD+ +
Sbjct: 212 TIWDLEKQVKTYSAKF-KHDFLNLQEPVSINVVKYMNDD---KILIGSD-FRIKAYDLRS 271

Query: 256 Q--KRPVISFDFRETPIKALA-EDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGS 315
           +  +   +   F + PI+++   +   +  +  ++ G +  +D+R  + +G F    +GS
Sbjct: 272 KTNRSSFLDVSFSKHPIQSIQYTNQKEHYFYASDSIGKVFCYDVRTSRQVGSFKDS-AGS 331

Query: 316 IRSIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSA 375
           ++ IA HP  P++A+ GLD ++R +++  R++L  +FLKQ L+ V+F      E+ T+  
Sbjct: 332 VKDIAIHPTLPLLATVGLDRHLRVYNLDNRKMLHKIFLKQRLSCVLFSK----EEPTN-- 389

Query: 376 VESIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKR 409
            E  Q++ EI + + E ++           +G  KK+
Sbjct: 392 -EIAQEEEEIWKNLEENKNRINNDDNDDNNEGNDKKK 389

[Close]

BLAST of Cp4.1LG09g09870 vs. Swiss-Prot
Match: NSA1_SCHPO (Ribosome biogenesis protein nsa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsa1 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-07
Identity = 55/223 (24.66%), Postives = 94/223 (42.15%), Query Frame = 1


Query: 193 EVNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFL----------SKDDHR---KFA 252
           E+  W  E   K++  K  K +SL +      T + F           S+DD      FA
Sbjct: 167 ELELWRTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTEDIINVIDGKSEDDESLCFHFA 226

Query: 253 AGTNNHQVRLYDISAQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGK 312
             T+  Q+R YD    +RPV +FD   +P+  +        ++  +    ++ FD    K
Sbjct: 227 TITHYGQLRFYDTKHGRRPVSTFDVSTSPLSHVGLLPSIKLLYFADKRAQISIFDHSKKK 286

Query: 313 LLGCFLGKCSGSIRSIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVF- 372
           ++G F G   G+  SI  H    ++A  GLD  VR +D   + L +A       + +V  
Sbjct: 287 VIGRFQG-VKGAPSSI--HCLGNVVAITGLDRNVRIFDADRKPLANAYIKALPTSIIVIN 346

Query: 373 --DSHFVGEDTTHSAVESIQQDI--EIGQTVSEEEHTPQKRKK 398
             D+  + ++    A +  +++I   + Q    E+  P KR K
Sbjct: 347 ERDAEIIKKEEELEAAKEEEEEIWRNMEQLEDTEDKKPSKRIK 386

[Close]

BLAST of Cp4.1LG09g09870 vs. TrEMBL
Match: E5GBV4_CUCME (WD-repeat protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 4.5e-171
Identity = 307/348 (88.22%), Postives = 325/348 (93.39%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP PKD+AI+GMHLFSKDE  + SRRCTL
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVESRRCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           LSCT KGNASMR+I+FSSSSS D STNLVKTWKVCGSGDV+CSKVDGSETHALFGGKGVE
Sbjct: 127 LSCTTKGNASMRSIEFSSSSSRDASTNLVKTWKVCGSGDVMCSKVDGSETHALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN WNLEQCTKIWTAKAPKKN+LGIFTPT FTS TFLSKDDHRKFAAGTN+HQVRLYDIS
Sbjct: 187 VNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQKRPVISFDFRETPIK+LAEDVDGNTIFVGNA+GDLASFDIRNGKLLGCFLGKCSGSIR
Sbjct: 247 AQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSYVRFWDI TRQLLSAVFLKQHL GVVFDSHFVGED T +AVE
Sbjct: 307 SIARHPELPVIASCGLDSYVRFWDINTRQLLSAVFLKQHLTGVVFDSHFVGEDVTQTAVE 366

Query: 375 SIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKK 422
            IQQ+ E  QTVSEEEH P+KRKK+SKEDGEG+KRKG+   NK+SKKK
Sbjct: 367 LIQQETEAAQTVSEEEHVPRKRKKSSKEDGEGRKRKGSKTTNKESKKK 414

[Close]

BLAST of Cp4.1LG09g09870 vs. TrEMBL
Match: A0A0A0LUB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050310 PE=4 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 8.5e-170
Identity = 309/361 (85.60%), Postives = 330/361 (91.41%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNGLIEVLNPLNGNLH+AISDNTDTSP PKD+AI+GMHLFSK+E  + SRRCTL
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHIAISDNTDTSPPPKDEAIVGMHLFSKEELEVESRRCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           LSCT KGNASMR+I FSSS S D ST+LVKTWKVCGSGDV C+KVDGSETHALFGGKGVE
Sbjct: 127 LSCTTKGNASMRSIGFSSSLSKDASTDLVKTWKVCGSGDVTCTKVDGSETHALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN WNLEQCTKIWTAKAPKKN+LGIFTPT FTS TFLSKDDHRKFAAGTN+HQVRLYDIS
Sbjct: 187 VNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQKRPVISFDFRETPIK+LAEDVDGNTIFVGNA+GDLASFDIRNGKLLGCFLGKCSGSIR
Sbjct: 247 AQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSYVRFWDIKTRQLLSAVFLKQHL GVVFDSHFV ED T +AVE
Sbjct: 307 SIARHPELPVIASCGLDSYVRFWDIKTRQLLSAVFLKQHLTGVVFDSHFVEEDVTQTAVE 366

Query: 375 SIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKG---ASKENKKSKKKLHGETESKQ 432
           SIQQ+ E  QTVSEEEH P+KRKK+SKE GEG KRKG     KE+KKS++K HGETE KQ
Sbjct: 367 SIQQETEAAQTVSEEEHMPRKRKKSSKEGGEGGKRKGNKTTDKESKKSRRKSHGETERKQ 426

[Close]

BLAST of Cp4.1LG09g09870 vs. TrEMBL
Match: D7TTT7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01780 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 2.1e-120
Identity = 232/355 (65.35%), Postives = 275/355 (77.46%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLA+AR+ GLIE+LNPLNG+  ++IS+  D  P P DDAI+G+HLF K    L+SR  TL
Sbjct: 67  LLAIAREGGLIEILNPLNGHPCLSISNIIDNGPEPGDDAIVGLHLFKKQNLDLSSRSHTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           L+CT KGNASMR+++ +SS +D  S+   +TW VC SG++LCS+VDG+E +ALFGGKGVE
Sbjct: 127 LTCTTKGNASMRSVELTSSHADSTSSVSSRTWNVCASGNILCSQVDGNENYALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN W+LEQ TKIWTAK+P KNSLG+FTPT FTS TFLSKDDHRKF AGTN+HQVRLYDIS
Sbjct: 187 VNVWDLEQGTKIWTAKSPPKNSLGLFTPTWFTSATFLSKDDHRKFVAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQ+RPVISFDFRETPIKA+AED DG TI++GN +GDLAS D+R GKLLGCFLGKCSGSIR
Sbjct: 247 AQRRPVISFDFRETPIKAVAEDQDGYTIYIGNGSGDLASVDMRTGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSY+RFWDIKTR++LSAVFLKQ L  VVFDS+F  E+   S V+
Sbjct: 307 SIARHPELPVIASCGLDSYLRFWDIKTRKVLSAVFLKQPLTNVVFDSNFAEEEVPSSVVD 366

Query: 375 --SIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKKLHGET 427
             +  Q+    Q   EEE  P KRKK S +    KK K      KK  KK   ET
Sbjct: 367 PPTEAQNTNETQESDEEEVQPLKRKKKSSKHSGSKKPK-----PKKRSKKAQDET 416

[Close]

BLAST of Cp4.1LG09g09870 vs. TrEMBL
Match: A0A0D2QHL5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G271300 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 6.8e-119
Identity = 232/362 (64.09%), Postives = 281/362 (77.62%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNG+IE+LNPLNG L   +SD ++    P+DDAI G+HLF +    L  R CTL
Sbjct: 66  LLAVARKNGVIEILNPLNGELSRMVSDVSNAGVRPEDDAIAGLHLFRRHRVELTPRSCTL 125

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           L+C  KGNAS++ +D + + +D   +   KTW VCGSG++L S+VDGSE++ALFGGKGVE
Sbjct: 126 LTCKTKGNASIKTVDLADTQAD---SGAPKTWNVCGSGNILFSEVDGSESYALFGGKGVE 185

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN W+LE CTKIWTAK P  NSLGIFTPT FTS TFLSKDDHRK  AGTNNHQVRLYDIS
Sbjct: 186 VNMWDLENCTKIWTAKPPPANSLGIFTPTWFTSATFLSKDDHRKVVAGTNNHQVRLYDIS 245

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQ+RPV+S DFRETPIKA+AED+DG+T+++GN +GDLAS DIR GKLLGCFLGKCSGSIR
Sbjct: 246 AQRRPVVSIDFRETPIKAVAEDLDGHTVYIGNGSGDLASVDIRTGKLLGCFLGKCSGSIR 305

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSY+R WDI TRQLLS+VFLKQHL  VVFD++F  E+  H A +
Sbjct: 306 SIARHPELPVIASCGLDSYLRIWDIGTRQLLSSVFLKQHLTKVVFDTNFT-EEVKHVAAD 365

Query: 375 -SIQQDIEIG--QTVSEEEHTPQKRKK-ASKEDGEGKKRKGASKENKKSKKKLHGETESK 432
            ++ +   IG  +T  E E    KRKK +SKE+ EGKK+K +SKE K+  KKL  +  SK
Sbjct: 366 LAVHEAQSIGEIETADESEKPAMKRKKSSSKENKEGKKKKKSSKE-KEGIKKLKSKKRSK 422

[Close]

BLAST of Cp4.1LG09g09870 vs. TrEMBL
Match: A0A0B0NUK4_GOSAR (WD repeat-containing 74 OS=Gossypium arboreum GN=F383_10750 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 3.4e-118
Identity = 233/362 (64.36%), Postives = 279/362 (77.07%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNG+IE+LNPLNG L   +SD +     P+DDAI G+HLF +    L  R CTL
Sbjct: 67  LLAVARKNGVIEILNPLNGELSRTVSDVSIAGVRPEDDAIAGLHLFRRQIVELTPRSCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           L+C  KGNAS++ ID + + +D   +   KTW VCGSG++L S+VDGSE++ALFGGKGVE
Sbjct: 127 LTCKTKGNASIKTIDLADTQAD---SGAPKTWNVCGSGNILFSEVDGSESYALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN W+LE CTKIWTAK P  NSLGIFTPT FTS TFLSKDDHRK  AGTNNHQVRLYDIS
Sbjct: 187 VNMWDLENCTKIWTAKPPPANSLGIFTPTWFTSATFLSKDDHRKVVAGTNNHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQ+RPV+SFDFRETPIKA+AED+DG+T+++GN +GDLAS DIR GKLLGCFLGKCSGSIR
Sbjct: 247 AQRRPVVSFDFRETPIKAVAEDLDGHTVYIGNGSGDLASVDIRTGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSY+R WDI TRQLLS+VFLKQHL  VVFD++F  E+  H A +
Sbjct: 307 SIARHPELPVIASCGLDSYLRIWDIGTRQLLSSVFLKQHLTKVVFDTNFT-EEVKHFAAD 366

Query: 375 SI---QQDIEIGQTVSEEEHTPQKRKK-ASKEDGEGKKRKGASKENKKSKKKLHGETESK 432
                 Q I+  +T  E E    KRKK +SKE+ EGKK+K +S+E K+  KKL  +  SK
Sbjct: 367 LALHEAQSIDEIETTDETEKPAMKRKKSSSKENKEGKKKKKSSEE-KEGIKKLKSKKISK 423

[Close]

BLAST of Cp4.1LG09g09870 vs. TAIR10
Match: AT1G29320.1 (AT1G29320.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 387.9 bits (995), Expect = 8.2e-108
Identity = 208/378 (55.03%), Postives = 262/378 (69.31%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISD-NTDTSPPKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARK+G +EV+NP NG+LH + S    D   P+D+ I  +HLF K       R CTL
Sbjct: 67  LLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQTERSCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           L+CTKKG+ S+R++ F  +  +       KTWK CGSG++L  KVDGSE  +LFGGK VE
Sbjct: 127 LTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSGEILVGKVDGSENFSLFGGKRVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
            N W+LEQCTKIW+AK P KN+LGIFTPT FTS TFLSKDDHRKF  GT +HQVRLYDIS
Sbjct: 187 ANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
            Q+RPV+SFDFRET I ++AED DG+TI+VGNA+ DLASFDIR GKLLG FLGKCSGSIR
Sbjct: 247 TQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDT----TH 374
           S+ RHP+  +IASCGLD Y+R +D+KTRQL+SAVFLKQHL G+VFDS F GE+T    T 
Sbjct: 307 SVVRHPQHQVIASCGLDRYLRVYDVKTRQLISAVFLKQHLTGLVFDSGFSGEETAVANTV 366

Query: 375 SAVESIQQDIEIGQTVSEEEHTPQKRKKASKE----------------DGEGKKRKGASK 432
           +   + ++   + Q   E E  P KRKK+ KE                + E +K    +K
Sbjct: 367 AEAATEEKMTIMDQEDDETEKAPVKRKKSKKEKRSREIVFEGEDDEENEDEIEKAPVKTK 426

[Close]

BLAST of Cp4.1LG09g09870 vs. NCBI nr
Match: gi|659067443|ref|XP_008439461.1| (PREDICTED: WD repeat-containing protein 74 isoform X1 [Cucumis melo])

HSP 1 Score: 609.0 bits (1569), Expect = 6.4e-171
Identity = 307/348 (88.22%), Postives = 325/348 (93.39%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP PKD+AI+GMHLFSKDE  + SRRCTL
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVESRRCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           LSCT KGNASMR+I+FSSSSS D STNLVKTWKVCGSGDV+CSKVDGSETHALFGGKGVE
Sbjct: 127 LSCTTKGNASMRSIEFSSSSSRDASTNLVKTWKVCGSGDVMCSKVDGSETHALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN WNLEQCTKIWTAKAPKKN+LGIFTPT FTS TFLSKDDHRKFAAGTN+HQVRLYDIS
Sbjct: 187 VNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQKRPVISFDFRETPIK+LAEDVDGNTIFVGNA+GDLASFDIRNGKLLGCFLGKCSGSIR
Sbjct: 247 AQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSYVRFWDI TRQLLSAVFLKQHL GVVFDSHFVGED T +AVE
Sbjct: 307 SIARHPELPVIASCGLDSYVRFWDINTRQLLSAVFLKQHLTGVVFDSHFVGEDVTQTAVE 366

Query: 375 SIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKK 422
            IQQ+ E  QTVSEEEH P+KRKK+SKEDGEG+KRKG+   NK+SKKK
Sbjct: 367 LIQQETEAAQTVSEEEHVPRKRKKSSKEDGEGRKRKGSKTTNKESKKK 414

[Close]

BLAST of Cp4.1LG09g09870 vs. NCBI nr
Match: gi|700209296|gb|KGN64392.1| (hypothetical protein Csa_1G050310 [Cucumis sativus])

HSP 1 Score: 604.7 bits (1558), Expect = 1.2e-169
Identity = 309/361 (85.60%), Postives = 330/361 (91.41%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNGLIEVLNPLNGNLH+AISDNTDTSP PKD+AI+GMHLFSK+E  + SRRCTL
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHIAISDNTDTSPPPKDEAIVGMHLFSKEELEVESRRCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           LSCT KGNASMR+I FSSS S D ST+LVKTWKVCGSGDV C+KVDGSETHALFGGKGVE
Sbjct: 127 LSCTTKGNASMRSIGFSSSLSKDASTDLVKTWKVCGSGDVTCTKVDGSETHALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN WNLEQCTKIWTAKAPKKN+LGIFTPT FTS TFLSKDDHRKFAAGTN+HQVRLYDIS
Sbjct: 187 VNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQKRPVISFDFRETPIK+LAEDVDGNTIFVGNA+GDLASFDIRNGKLLGCFLGKCSGSIR
Sbjct: 247 AQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSYVRFWDIKTRQLLSAVFLKQHL GVVFDSHFV ED T +AVE
Sbjct: 307 SIARHPELPVIASCGLDSYVRFWDIKTRQLLSAVFLKQHLTGVVFDSHFVEEDVTQTAVE 366

Query: 375 SIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKG---ASKENKKSKKKLHGETESKQ 432
           SIQQ+ E  QTVSEEEH P+KRKK+SKE GEG KRKG     KE+KKS++K HGETE KQ
Sbjct: 367 SIQQETEAAQTVSEEEHMPRKRKKSSKEGGEGGKRKGNKTTDKESKKSRRKSHGETERKQ 426

[Close]

BLAST of Cp4.1LG09g09870 vs. NCBI nr
Match: gi|778658047|ref|XP_011652016.1| (PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 74 [Cucumis sativus])

HSP 1 Score: 590.9 bits (1522), Expect = 1.8e-165
Identity = 300/348 (86.21%), Postives = 319/348 (91.67%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNGLIEVLNPLNGNLH+AISDNTDTSP PKD+AI+GMHLFSK+E  + SRRCTL
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHIAISDNTDTSPPPKDEAIVGMHLFSKEELEVESRRCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           LSCT KGNASMR+I FSSS S D ST+LVKTWKVCGSGDV C+KVDGSETHALFGGKGVE
Sbjct: 127 LSCTTKGNASMRSIGFSSSLSKDASTDLVKTWKVCGSGDVTCTKVDGSETHALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN WNLEQCTKIWTAKAPKKN+LGIFTPT FTS TFLSKDDHRKFAAGTN+HQVRLYDIS
Sbjct: 187 VNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQKRPVISFDFRETPIK+LAEDVDGNTIFVGNA+GDLASFDIRNGKLLGCFLGKCSGSIR
Sbjct: 247 AQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSYVRFWDIKTRQLLSAVFLKQHL GVVFDSHFV ED T +AVE
Sbjct: 307 SIARHPELPVIASCGLDSYVRFWDIKTRQLLSAVFLKQHLTGVVFDSHFVEEDVTQTAVE 366

Query: 375 SIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKK 422
           SIQQ+ E  QTVSEEEH P+KRKK+SKE GEG KRKG    +K+S KK
Sbjct: 367 SIQQETEAAQTVSEEEHMPRKRKKSSKEGGEGGKRKGNKTTDKESXKK 414

[Close]

BLAST of Cp4.1LG09g09870 vs. NCBI nr
Match: gi|659067445|ref|XP_008439469.1| (PREDICTED: WD repeat-containing protein 74 isoform X2 [Cucumis melo])

HSP 1 Score: 511.9 bits (1317), Expect = 1.1e-141
Identity = 251/274 (91.61%), Postives = 262/274 (95.62%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP PKD+AI+GMHLFSKDE  + SRRCTL
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVESRRCTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           LSCT KGNASMR+I+FSSSSS D STNLVKTWKVCGSGDV+CSKVDGSETHALFGGKGVE
Sbjct: 127 LSCTTKGNASMRSIEFSSSSSRDASTNLVKTWKVCGSGDVMCSKVDGSETHALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN WNLEQCTKIWTAKAPKKN+LGIFTPT FTS TFLSKDDHRKFAAGTN+HQVRLYDIS
Sbjct: 187 VNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQKRPVISFDFRETPIK+LAEDVDGNTIFVGNA+GDLASFDIRNGKLLGCFLGKCSGSIR
Sbjct: 247 AQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAV 348
           SIARHPE P+IASCGLDSYVRFWDI TRQLLSAV
Sbjct: 307 SIARHPELPVIASCGLDSYVRFWDINTRQLLSAV 340

[Close]

BLAST of Cp4.1LG09g09870 vs. NCBI nr
Match: gi|225427147|ref|XP_002277288.1| (PREDICTED: WD repeat-containing protein 74 isoform X1 [Vitis vinifera])

HSP 1 Score: 440.7 bits (1132), Expect = 3.0e-120
Identity = 232/355 (65.35%), Postives = 275/355 (77.46%), Query Frame = 1


Query: 75  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSP-PKDDAIIGMHLFSKDESALASRRCTL 134
           LLA+AR+ GLIE+LNPLNG+  ++IS+  D  P P DDAI+G+HLF K    L+SR  TL
Sbjct: 67  LLAIAREGGLIEILNPLNGHPCLSISNIIDNGPEPGDDAIVGLHLFKKQNLDLSSRSHTL 126

Query: 135 LSCTKKGNASMRAIDFSSSSSDDISTNLVKTWKVCGSGDVLCSKVDGSETHALFGGKGVE 194
           L+CT KGNASMR+++ +SS +D  S+   +TW VC SG++LCS+VDG+E +ALFGGKGVE
Sbjct: 127 LTCTTKGNASMRSVELTSSHADSTSSVSSRTWNVCASGNILCSQVDGNENYALFGGKGVE 186

Query: 195 VNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTNNHQVRLYDIS 254
           VN W+LEQ TKIWTAK+P KNSLG+FTPT FTS TFLSKDDHRKF AGTN+HQVRLYDIS
Sbjct: 187 VNVWDLEQGTKIWTAKSPPKNSLGLFTPTWFTSATFLSKDDHRKFVAGTNSHQVRLYDIS 246

Query: 255 AQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIR 314
           AQ+RPVISFDFRETPIKA+AED DG TI++GN +GDLAS D+R GKLLGCFLGKCSGSIR
Sbjct: 247 AQRRPVISFDFRETPIKAVAEDQDGYTIYIGNGSGDLASVDMRTGKLLGCFLGKCSGSIR 306

Query: 315 SIARHPEFPIIASCGLDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVE 374
           SIARHPE P+IASCGLDSY+RFWDIKTR++LSAVFLKQ L  VVFDS+F  E+   S V+
Sbjct: 307 SIARHPELPVIASCGLDSYLRFWDIKTRKVLSAVFLKQPLTNVVFDSNFAEEEVPSSVVD 366

Query: 375 --SIQQDIEIGQTVSEEEHTPQKRKKASKEDGEGKKRKGASKENKKSKKKLHGET 427
             +  Q+    Q   EEE  P KRKK S +    KK K      KK  KK   ET
Sbjct: 367 PPTEAQNTNETQESDEEEVQPLKRKKKSSKHSGSKKPK-----PKKRSKKAQDET 416

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g09870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WDR74_BOVIN	8.0e-20	29.57	WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1	[more]
WDR74_HUMAN	1.0e-19	29.84	WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1	[more]
WDR74_MOUSE	1.0e-19	30.77	WD repeat-containing protein 74 OS=Mus musculus GN=Wdr74 PE=2 SV=1	[more]
Y0555_DICDI	4.5e-15	24.33	WD repeat-containing protein DDB_G0290555 OS=Dictyostelium discoideum GN=DDB_G02...	[more]
NSA1_SCHPO	1.2e-07	24.66	Ribosome biogenesis protein nsa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]

BLAST of Cp4.1LG09g09870 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBV4_CUCME	4.5e-171	88.22	WD-repeat protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LUB9_CUCSA	8.5e-170	85.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050310 PE=4 SV=1	[more]
D7TTT7_VITVI	2.1e-120	65.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01780 PE=4 SV=...	[more]
A0A0D2QHL5_GOSRA	6.8e-119	64.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G271300 PE=4 SV=1	[more]
A0A0B0NUK4_GOSAR	3.4e-118	64.36	WD repeat-containing 74 OS=Gossypium arboreum GN=F383_10750 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g09870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29320.1	8.2e-108	55.03	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Cp4.1LG09g09870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067443\|ref\|XP_008439461.1\|	6.4e-171	88.22	PREDICTED: WD repeat-containing protein 74 isoform X1 [Cucumis melo]	[more]
gi\|700209296\|gb\|KGN64392.1\|	1.2e-169	85.60	hypothetical protein Csa_1G050310 [Cucumis sativus]	[more]
gi\|778658047\|ref\|XP_011652016.1\|	1.8e-165	86.21	PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 74 [Cucumis sativus...	[more]
gi\|659067445\|ref\|XP_008439469.1\|	1.1e-141	91.61	PREDICTED: WD repeat-containing protein 74 isoform X2 [Cucumis melo]	[more]
gi\|225427147\|ref\|XP_002277288.1\|	3.0e-120	65.35	PREDICTED: WD repeat-containing protein 74 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g09870.1	Cp4.1LG09g09870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 297..337 score: 0.0086coord: 212..251 score:
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 305..346 score: 10
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 74..358 score: 3.6
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 238..346 score: 11
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 63..361 score: 4.35
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 324..338 scor
None	No IPR available	PANTHER	PTHR16038	NOP SEVEN ASSOCIATED PROTEIN 1	coord: 74..389 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g09870	Cucsa.391930	Cucumber (Gy14) v1	cgycpeB1034
Cp4.1LG09g09870	CmaCh18G002230	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g09870	CmoCh13G008260	Cucurbita moschata (Rifu)	cmocpeB184
Cp4.1LG09g09870	CmoCh18G002010	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g09870	Cla002605	Watermelon (97103) v1	cpewmB025
Cp4.1LG09g09870	Csa1G050310	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g09870	MELO3C002347	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g09870	ClCG03G003620	Watermelon (Charleston Gray)	cpewcgB036
Cp4.1LG09g09870	CSPI01G09370	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g09870	Lsi02G004850	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g09870	MELO3C002347.2	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g09870	CsaV3_1G009480	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g09870	Bhi08G001216	Wax gourd	cpewgoB0048
Cp4.1LG09g09870	Bhi08G001387	Wax gourd	cpewgoB0044
Cp4.1LG09g09870	CsGy1G009420	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g09870	Carg06785	Silver-seed gourd	carcpeB0694
Cp4.1LG09g09870	Carg07590	Silver-seed gourd	carcpeB1396

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g09870	Cp4.1LG20g03290	Cucurbita pepo (Zucchini)	cpecpeB045

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g09870	Cucurbita maxima (Rimu)	cmacpeB214