Cp4.1LG09g08930 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g08930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAnkyrin repeat family protein
LocationCp4.1LG09 : 8070794 .. 8071283 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCGTGAGCTTTTGTGGTTCAAGGTATAACATCATTCATATCCTTCTTCTTTGCTCTAAATTTACTCTCTCATATTGTGAACTTGAAGGGAGCAGAGAAACTTAACTTTCCCATGTGAAGATAACAAAAGACCTCGTTGATAAACTAACACCTCGCGAGCGGTTTACAAAAGAACACGAACAACTACGAAAACAGGTCGAGGAATGGATGAGAAACACGGCAAACTCATGCATGCTAGTGTCGTTGCCGATCAAGTTACTGATTGGGGTACTGATGCTATTCGTTTCTATAGCATGCATGGTAGTGGCATTCAGCACAGCCTTCATTATTGCTTATGATAAAACAAACGAGAAGATTCCAATGGCCATTGTAGTGCCAGAGATCCTCCCAATATGGAGTTTTTGGTTGTGTCACGATAAACTTGTAGTGGACATATGGTCATTGTCTACATTTTCTTTGAGGCAGCGTAAGAAAATGTTATTTTAG

mRNA sequence

ATGCATCGTGAGCTTTTGTGGTTCAAGATAACAAAAGACCTCGTTGATAAACTAACACCTCGCGAGCGGTTTACAAAAGAACACGAACAACTACGAAAACAGGTCGAGGAATGGATGAGAAACACGGCAAACTCATGCATGCTAGTGTCGTTGCCGATCAAGTTACTGATTGGGGTACTGATGCTATTCGTTTCTATAGCATGCATGGTAGTGGCATTCAGCACAGCCTTCATTATTGCTTATGATAAAACAAACGAGAAGATTCCAATGGCCATTGTAGTGCCAGAGATCCTCCCAATATGGAGTTTTTGGTTGTGTCACGATAAACTTGTAGTGGACATATGGTCATTGTCTACATTTTCTTTGAGGCAGCGTAAGAAAATGTTATTTTAG

Coding sequence (CDS)

ATGCATCGTGAGCTTTTGTGGTTCAAGATAACAAAAGACCTCGTTGATAAACTAACACCTCGCGAGCGGTTTACAAAAGAACACGAACAACTACGAAAACAGGTCGAGGAATGGATGAGAAACACGGCAAACTCATGCATGCTAGTGTCGTTGCCGATCAAGTTACTGATTGGGGTACTGATGCTATTCGTTTCTATAGCATGCATGGTAGTGGCATTCAGCACAGCCTTCATTATTGCTTATGATAAAACAAACGAGAAGATTCCAATGGCCATTGTAGTGCCAGAGATCCTCCCAATATGGAGTTTTTGGTTGTGTCACGATAAACTTGTAGTGGACATATGGTCATTGTCTACATTTTCTTTGAGGCAGCGTAAGAAAATGTTATTTTAG

Protein sequence

MHRELLWFKITKDLVDKLTPRERFTKEHEQLRKQVEEWMRNTANSCMLVSLPIKLLIGVLMLFVSIACMVVAFSTAFIIAYDKTNEKIPMAIVVPEILPIWSFWLCHDKLVVDIWSLSTFSLRQRKKMLF
Homology
[Close]
BLAST of Cp4.1LG09g08930 vs. TrEMBL
Match: A0A0A0LWX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.3e-08
Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 1   MHRELLWFKI---------------TKDLVDKLTPRERFTKEHEQLRKQVEEWMRNTANS 58
           M RELLWFK                T D+  KLTPRE FTKEH  LR++ EEWM+NTANS
Sbjct: 447 MQRELLWFKEVEKIVLPSQLEAKCDTDDVSIKLTPRELFTKEHAHLRRKGEEWMKNTANS 506

[Close]
BLAST of Cp4.1LG09g08930 vs. TrEMBL
Match: A0A0A0LU19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 37/71 (52.11%), Postives = 43/71 (60.56%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLV--------------DKLTPRERFTKEHEQLRKQVEEWMRNTANSC 58
           M RELLWFK  + +V               KLTP E FTKEH+ LRK  EEWM+NTANSC
Sbjct: 457 MQRELLWFKEVEKIVLPSQRGAKCEVDSLIKLTPCELFTKEHKDLRKDGEEWMKNTANSC 516

[Close]
BLAST of Cp4.1LG09g08930 vs. TrEMBL
Match: A0A0A0LUM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058120 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLV-------------DKLTPRERFTKEHEQLRKQVEEWMRNTANSCM 58
           M RELLW+K  + +V              +LTPRE FTKEH +LRK  EEWM+NTANSCM
Sbjct: 416 MQRELLWYKEVEKIVLPCQREAKCNDGSIQLTPRELFTKEHTELRKHGEEWMKNTANSCM 475

[Close]
BLAST of Cp4.1LG09g08930 vs. TrEMBL
Match: A0A0A0KRV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-07
Identity = 37/69 (53.62%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLVD------------KLTPRERFTKEHEQLRKQVEEWMRNTANSCML 58
           M RELLW+K  + +V             KLTPRE FT EH+ LRK  E WMRNTANSCML
Sbjct: 367 MQRELLWYKEVEKIVLSSQLEAKCDDPLKLTPRELFTIEHKDLRKDGEAWMRNTANSCML 426

[Close]
BLAST of Cp4.1LG09g08930 vs. TrEMBL
Match: A0A0A0LUL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058070 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-06
Identity = 36/84 (42.86%), Postives = 45/84 (53.57%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLV----------------DKLTPRERFTKEHEQLRKQVEEWMRNTAN 60
           M RELLWFK  + +V                 KLTPRE FT+ H+ LRK  EEWM+NTAN
Sbjct: 496 MQRELLWFKEVEKIVLPSQLMGKSNDPNPQLSKLTPRELFTENHKDLRKAGEEWMKNTAN 555

Query: 61  SCMLVSLPIKLLIGVLMLFVSIAC 69
           SCM+V+  I  ++      V   C
Sbjct: 556 SCMIVAALITTVVFAAAFTVPGGC 579

[Close]
BLAST of Cp4.1LG09g08930 vs. TAIR10
Match: AT5G35810.1 (AT5G35810.1 Ankyrin repeat family protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLVDKL----------TPRERFTKEHEQLRKQVEEWMRNTANSCMLVS 58
           M RE+LW+K  K++V ++             + FTKEH+ LRK+ E+WM+ TA +C+LVS
Sbjct: 129 MQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVS 188

[Close]
BLAST of Cp4.1LG09g08930 vs. TAIR10
Match: AT5G04690.1 (AT5G04690.1 Ankyrin repeat family protein)

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-07
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLV----------DKLTPRERFTKEHEQLRKQVEEWMRNTANSCMLVS 51
           M REL WFK  + +V          + LTP E F KEHE +R + E+WM++TA SC LV+
Sbjct: 415 MQRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVA 474

[Close]
BLAST of Cp4.1LG09g08930 vs. TAIR10
Match: AT5G04700.1 (AT5G04700.1 Ankyrin repeat family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 1   MHRELLWFK--------ITKDLV--DKLTPRERFTKEHEQLRKQVEEWMRNTANSCMLVS 51
           + REL WFK        I K+ V  ++ TP E FTKEH+ LR++ E+WM++TA SC LV+
Sbjct: 457 LQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVA 516

[Close]
BLAST of Cp4.1LG09g08930 vs. TAIR10
Match: AT3G54070.1 (AT3G54070.1 Ankyrin repeat family protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLVDKL----------TPRERFTKEHEQLRKQVEEWMRNTANSCML 49
           M +ELLWFK  K++V +              + FT++HE LRK+ E WM+ TA +CML
Sbjct: 353 MQKELLWFKAVKEIVPRSYIETKNTKGELAHDIFTEQHENLRKEGERWMKETATACML 410

[Close]
BLAST of Cp4.1LG09g08930 vs. TAIR10
Match: AT5G04730.1 (AT5G04730.1 Ankyrin-repeat containing protein)

HSP 1 Score: 47.4 bits (111), Expect = 8.0e-06
Identity = 26/60 (43.33%), Postives = 32/60 (53.33%), Query Frame = 1 

Query: 1   MHRELLWFKITKDLV----------DKLTPRERFTKEHEQLRKQVEEWMRNTANSCMLVS 51
           M RE  WFK  + LV          D  TPR+ F   HE LRK+ EEWM+ TA +C  V+
Sbjct: 392 MQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVA 451

[Close]
BLAST of Cp4.1LG09g08930 vs. NCBI nr
Match: gi|778658329|ref|XP_011652525.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-15
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 1 

Query: 43  ANSCMLVSLPIKLLIGVLMLFVSIACMVVAFSTAFIIAYDKTNEKIPMAIVVPEILPIWS 102
           A    L+SLP+KLL G++ LF+SI+CMVVAFS  F IAYDKT  KIP+ I +  I+P+  
Sbjct: 506 AEEDFLMSLPLKLLFGLVTLFLSISCMVVAFSATFFIAYDKTKHKIPLGIAIVSIVPVGC 565

Query: 103 FWLCHDKLVVDIWS---LSTFSLRQRKKMLF 131
           F L H KLVVDI+     + FSL++RKK LF
Sbjct: 566 FCLFHTKLVVDIFRSGYWAQFSLKKRKKRLF 596

[Close]
BLAST of Cp4.1LG09g08930 vs. NCBI nr
Match: gi|659067679|ref|XP_008440732.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 1 

Query: 43  ANSCMLVSLPIKLLIGVLMLFVSIACMVVAFSTAFIIAYDKTNEKIPMAIVVPEILPIWS 102
           A    L+SLPIKLL G++ LF+SI+CMVVAFS  F IAYDKT + IP+AI +  I+P+  
Sbjct: 638 AEDDFLMSLPIKLLFGLVTLFLSISCMVVAFSATFFIAYDKTKQNIPLAIAIVSIVPVVC 697

Query: 103 FWLCHDKLVVDIWS---LSTFSLRQRKKMLF 131
           F L H KLVVDI+     + FSL++ KK LF
Sbjct: 698 FCLFHSKLVVDIFRSGYWAQFSLKKHKKRLF 728

[Close]
BLAST of Cp4.1LG09g08930 vs. NCBI nr
Match: gi|778658335|ref|XP_011652537.1| (PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 1 

Query: 43  ANSCMLVSLPIKLLIGVLMLFVSIACMVVAFSTAFIIAYDKTNEKIPMAIVVPEILPIWS 102
           A    L+SLP+KL  G++ LF+SI+CMVVAFS  F IAYDKT  KIP+AI +  ILP+  
Sbjct: 639 AEEDFLMSLPLKLFFGLVTLFLSISCMVVAFSATFFIAYDKTKHKIPLAIAIVSILPVGC 698

Query: 103 FWLCHDKLVVDIWSLS---TFSLRQRKKMLF 131
           F L H KL VDI+  S    FSL++ KK LF
Sbjct: 699 FCLFHFKLAVDIFLSSYWAKFSLKKHKKRLF 729

[Close]
BLAST of Cp4.1LG09g08930 vs. NCBI nr
Match: gi|449454893|ref|XP_004145188.1| (PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 43  ANSCMLVSLPIKLLIGVLMLFVSIACMVVAFSTAFIIAYDKTNEKIPMAIVVPEILPIWS 102
           A    L+SLP KLL G+L LF+SIACMVVAFS  F IAYDKTN K P+AI    ++PI  
Sbjct: 524 AEEDFLMSLPGKLLFGLLTLFLSIACMVVAFSMTFFIAYDKTNAKFPLAIAAVTVIPIGC 583

Query: 103 FWLCHDKLVVDI-----WSLSTFSLRQRKKMLF 131
           F + H +LVVDI     WS   FS R+R   LF
Sbjct: 584 FCVFHVRLVVDILRSTYWSY--FSFRKRNIKLF 614

[Close]
BLAST of Cp4.1LG09g08930 vs. NCBI nr
Match: gi|659067689|ref|XP_008440786.1| (PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-12
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 43  ANSCMLVSLPIKLLIGVLMLFVSIACMVVAFSTAFIIAYDKTNEKIPMAIVVPEILPIWS 102
           A    L+SLP KLL G+L LFVSIACM VAFS  F IAYDKTN K+P+AI    ++PI  
Sbjct: 535 AEEDFLMSLPGKLLFGLLTLFVSIACMAVAFSMTFFIAYDKTNAKLPLAIAAVTVIPIGC 594

Query: 103 FWLCHDKLVVDI-----WSLSTFSLRQRKKMLF 131
           F + H +L+VDI     WS   FS R+R   LF
Sbjct: 595 FCVFHLRLIVDILRSAYWSY--FSFRKRNIKLF 625

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g08930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g08930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWX0_CUCSA7.3e-0851.39Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1[more]
A0A0A0LU19_CUCSA1.6e-0752.11Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1[more]
A0A0A0LUM4_CUCSA2.1e-0750.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058120 PE=4 SV=1[more]
A0A0A0KRV4_CUCSA4.7e-0753.62Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1[more]
A0A0A0LUL7_CUCSA4.0e-0642.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058070 PE=4 SV=1[more]
BLAST of Cp4.1LG09g08930 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35810.11.9e-0738.81 Ankyrin repeat family protein[more]
AT5G04690.19.4e-0745.00 Ankyrin repeat family protein[more]
AT5G04700.11.2e-0646.67 Ankyrin repeat family protein[more]
AT3G54070.12.1e-0641.38 Ankyrin repeat family protein[more]
AT5G04730.18.0e-0643.33 Ankyrin-repeat containing protein[more]
BLAST of Cp4.1LG09g08930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778658329|ref|XP_011652525.1|8.8e-1554.95PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus][more]
gi|659067679|ref|XP_008440732.1|1.5e-1454.95PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo][more]
gi|778658335|ref|XP_011652537.1|4.4e-1454.95PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like... [more]
gi|449454893|ref|XP_004145188.1|2.4e-1254.84PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus][more]
gi|659067689|ref|XP_008440786.1|3.1e-1253.76PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Cucumis ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g08930.1Cp4.1LG09g08930.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 21..41
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g08930CmoCh18G003070Cucurbita moschata (Rifu)cmocpeB377
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g08930Wax gourdcpewgoB0033
Cp4.1LG09g08930Wax gourdcpewgoB0047
Cp4.1LG09g08930Wax gourdcpewgoB0041
Cp4.1LG09g08930Wild cucumber (PI 183967)cpecpiB025
Cp4.1LG09g08930Cucurbita pepo (Zucchini)cpecpeB019
Cp4.1LG09g08930Cucurbita pepo (Zucchini)cpecpeB044
Cp4.1LG09g08930Cucurbita pepo (Zucchini)cpecpeB048
Cp4.1LG09g08930Cucurbita pepo (Zucchini)cpecpeB050
Cp4.1LG09g08930Cucumber (Gy14) v1cgycpeB0031
Cp4.1LG09g08930Cucumber (Gy14) v1cgycpeB0156
Cp4.1LG09g08930Cucurbita maxima (Rimu)cmacpeB212
Cp4.1LG09g08930Cucurbita maxima (Rimu)cmacpeB652
Cp4.1LG09g08930Cucurbita maxima (Rimu)cmacpeB859
Cp4.1LG09g08930Cucurbita moschata (Rifu)cmocpeB182
Cp4.1LG09g08930Cucurbita moschata (Rifu)cmocpeB602
Cp4.1LG09g08930Cucurbita moschata (Rifu)cmocpeB799
Cp4.1LG09g08930Wild cucumber (PI 183967)cpecpiB047
Cp4.1LG09g08930Cucumber (Chinese Long) v2cpecuB029
Cp4.1LG09g08930Cucumber (Chinese Long) v2cpecuB052
Cp4.1LG09g08930Bottle gourd (USVL1VR-Ls)cpelsiB022
Cp4.1LG09g08930Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g08930Bottle gourd (USVL1VR-Ls)cpelsiB034
Cp4.1LG09g08930Watermelon (Charleston Gray)cpewcgB031
Cp4.1LG09g08930Watermelon (Charleston Gray)cpewcgB036
Cp4.1LG09g08930Watermelon (97103) v1cpewmB025
Cp4.1LG09g08930Watermelon (97103) v1cpewmB043
Cp4.1LG09g08930Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g08930Melon (DHL92) v3.5.1cpemeB045
Cp4.1LG09g08930Cucumber (Gy14) v2cgybcpeB018
Cp4.1LG09g08930Cucumber (Gy14) v2cgybcpeB707
Cp4.1LG09g08930Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g08930Melon (DHL92) v3.6.1cpemedB053
Cp4.1LG09g08930Silver-seed gourdcarcpeB0911
Cp4.1LG09g08930Silver-seed gourdcarcpeB1117
Cp4.1LG09g08930Silver-seed gourdcarcpeB1218
Cp4.1LG09g08930Silver-seed gourdcarcpeB1251
Cp4.1LG09g08930Silver-seed gourdcarcpeB1287
Cp4.1LG09g08930Silver-seed gourdcarcpeB1395
Cp4.1LG09g08930Cucumber (Chinese Long) v3cpecucB0031
Cp4.1LG09g08930Cucumber (Chinese Long) v3cpecucB0054