Cp4.1LG09g04470 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g04470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionScarecrow-like protein 8, putative
LocationCp4.1LG09 : 2871855 .. 2872419 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTTGCGCCGGTGGTTAAGATTTCGAATGTGAGAGGTAGTTCTGTGCAGAAATTGGATGAATATGGTTTTCGCTTTGAAATCACGGGTAAATCCAGCAGAATTTCCGCCTCTTGTGGCGGAGATTTTCGGCGACGAGCACTCGACGAAGCCTCAGTCGCTTTAAGATGTTTCTCCTTGCTTTAAGCTTACTTTCATGGCGGAAAATCTCGCGATTCTTGAGGCAATAAAGGAAGAGGATCGAAAATTGCACGTTGTGGATTTCGATATCGGGGAGGGAGGCTAGTATATGAATTTAATCCACCTTCTCTCAGGTCATCTGAAAGGGAAGGTCATCATGAAATTGATGACAGTTGTGGCGGAGAACGGCAGAGACGAGAGGTTGAAACAAGCCAGCGAGTCACTGAGTGAACTAGCGAAAGAACTCGGCATCGGGTTCAAATTCAACTTGGTGAAACAGGAACTGGCAAAACTGACGCGCGAGTCACTCGGGTGCGATGGAGACGAATCACTAGCAGTGAATTTCGTTTTTAAGTTGAATCCTCGAGACAAGAGTGTGTAA

mRNA sequence

ATGATTCTTGCGCCGGTGGTTAAGATTTCGAATGTGAGAGGTAGTTCTGTGCAGAAATTGGATGAATATGGTTTTCGCTTTGAAATCACGGGTCATCTGAAAGGGAAGGTCATCATGAAATTGATGACAGTTGTGGCGGAGAACGGCAGAGACGAGAGGTTGAAACAAGCCAGCGAGTCACTGAGTGAACTAGCGAAAGAACTCGGCATCGGGTTCAAATTCAACTTGGTGAAACAGGAACTGGCAAAACTGACGCGCGAGTCACTCGGGTGCGATGGAGACGAATCACTAGCAGTGAATTTCGTTTTTAAGTTGAATCCTCGAGACAAGAGTGTGTAA

Coding sequence (CDS)

ATGATTCTTGCGCCGGTGGTTAAGATTTCGAATGTGAGAGGTAGTTCTGTGCAGAAATTGGATGAATATGGTTTTCGCTTTGAAATCACGGGTCATCTGAAAGGGAAGGTCATCATGAAATTGATGACAGTTGTGGCGGAGAACGGCAGAGACGAGAGGTTGAAACAAGCCAGCGAGTCACTGAGTGAACTAGCGAAAGAACTCGGCATCGGGTTCAAATTCAACTTGGTGAAACAGGAACTGGCAAAACTGACGCGCGAGTCACTCGGGTGCGATGGAGACGAATCACTAGCAGTGAATTTCGTTTTTAAGTTGAATCCTCGAGACAAGAGTGTGTAA

Protein sequence

MILAPVVKISNVRGSSVQKLDEYGFRFEITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKLNPRDKSV
Homology
[Close]
BLAST of Cp4.1LG09g04470 vs. Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-09
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1 

Query: 45  VAENGRDERLKQASESLSELAKELGIGFKFNLVKQ-ELAKLTRESLGCDGDESLAVNFVF 104
           + ++G +ERLK   + LS+L   LGI   FN+V    L  L RESLGCD DE+LAVN  F
Sbjct: 417 LVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAF 476

Query: 105 KL-----------NPRDK 111
           KL           NPRD+
Sbjct: 477 KLYRVPDESVCTENPRDE 494

[Close]
BLAST of Cp4.1LG09g04470 vs. TrEMBL
Match: A0A0A0KK19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140530 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.3e-20
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 29  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRES 88
           ++G  KGKV +KL  VV ENG DE LK   ESL++LA ELG+GF FN+V+ +LA+LTRES
Sbjct: 357 LSGRQKGKVTVKLTAVVTENGGDESLKLVGESLTQLANELGVGFNFNIVRHKLAELTRES 416

Query: 89  LGCDGDESLAVNFVFKL-----------NPRDK 111
           LGC+ DESLAVNF FKL           NPRD+
Sbjct: 417 LGCELDESLAVNFAFKLYRMPDESVSTENPRDE 449

[Close]
BLAST of Cp4.1LG09g04470 vs. TrEMBL
Match: A0A0S3SN64_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G082900 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 28  EITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRE 87
           E++   KG   +  +  V EN  DER+  A   L  LA++LGIGF+F ++ Q +A+LTRE
Sbjct: 363 ELSLRRKGYPAVVKIIAVTENSADERMSSAGVMLGRLAEQLGIGFEFKVLTQRIAELTRE 422

Query: 88  SLGCDGDESLAVNFVFKL-----------NPRDK 111
           SLGC+ DE+LAVNF F+L           NPRD+
Sbjct: 423 SLGCEADEALAVNFAFRLYKIPDESVSTENPRDE 456

[Close]
BLAST of Cp4.1LG09g04470 vs. TrEMBL
Match: A0A0L9TZG3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g208500 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 28  EITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRE 87
           E++   KG   +  +  V EN  DER+  A   L  LA++LGIGF+F ++ Q +A+LTRE
Sbjct: 363 ELSLRRKGYPAVVKIIAVTENSADERMSSAGVMLGRLAEQLGIGFEFKVLTQRIAELTRE 422

Query: 88  SLGCDGDESLAVNFVFKL-----------NPRDK 111
           SLGC+ DE+LAVNF F+L           NPRD+
Sbjct: 423 SLGCEADEALAVNFAFRLYKIPDESVSTENPRDE 456

[Close]
BLAST of Cp4.1LG09g04470 vs. TrEMBL
Match: V7BC54_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G073500g PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.2e-12
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 28  EITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRE 87
           E++   KG   +  +  VAEN  DER+  A   L  +AK+LGI F+F ++ + LA+LTRE
Sbjct: 358 ELSLRRKGAPAVVKIIAVAENDADERMSTAGVMLGRIAKQLGISFEFQVLTRRLAELTRE 417

Query: 88  SLGCDGDESLAVNFVFKL-----------NPRD 110
           SLGCD D +LAVNF F+L           NPRD
Sbjct: 418 SLGCDADAALAVNFAFRLYRMPDESVSTENPRD 450

[Close]
BLAST of Cp4.1LG09g04470 vs. TrEMBL
Match: I1NGX2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G162100 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-12
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 

Query: 28  EITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRE 87
           E++   KG      +  VAENG DERL      L   A++LGIGF+F ++ + +A+LTRE
Sbjct: 355 ELSARRKGAPSAVKIVAVAENGADERLNSVGLLLGRHAEKLGIGFEFKVLIRRIAELTRE 414

Query: 88  SLGCDGDESLAVNFVFKL-----------NPRDK 111
           SL CD DE+LAVNF +KL           NPRD+
Sbjct: 415 SLDCDADEALAVNFAYKLYRMPDESVSTENPRDE 448

[Close]
BLAST of Cp4.1LG09g04470 vs. TAIR10
Match: AT5G52510.1 (AT5G52510.1 SCARECROW-like 8)

HSP 1 Score: 63.5 bits (153), Expect = 9.3e-11
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1 

Query: 45  VAENGRDERLKQASESLSELAKELGIGFKFNLVKQ-ELAKLTRESLGCDGDESLAVNFVF 104
           + ++G +ERLK   + LS+L   LGI   FN+V    L  L RESLGCD DE+LAVN  F
Sbjct: 417 LVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAF 476

Query: 105 KL-----------NPRDK 111
           KL           NPRD+
Sbjct: 477 KLYRVPDESVCTENPRDE 494

[Close]
BLAST of Cp4.1LG09g04470 vs. NCBI nr
Match: gi|778699053|ref|XP_011654649.1| (PREDICTED: scarecrow-like protein 8 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 29  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRES 88
           ++G  KGKV +KL  VV ENG DE LK   ESL++LA ELG+GF FN+V+ +LA+LTRES
Sbjct: 357 LSGRQKGKVTVKLTAVVTENGGDESLKLVGESLTQLANELGVGFNFNIVRHKLAELTRES 416

Query: 89  LGCDGDESLAVNFVFKL-----------NPRDK 111
           LGC+ DESLAVNF FKL           NPRD+
Sbjct: 417 LGCELDESLAVNFAFKLYRMPDESVSTENPRDE 449

[Close]
BLAST of Cp4.1LG09g04470 vs. NCBI nr
Match: gi|659074287|ref|XP_008437524.1| (PREDICTED: scarecrow-like protein 8 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 29  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRES 88
           ++G  KGKV +KL  VV ENG DE LK   ESL++LA ELG+GF FN+V+ +L++LTRES
Sbjct: 357 LSGRQKGKVTVKLTAVVMENGGDESLKLVGESLTQLANELGVGFNFNIVRHKLSELTRES 416

Query: 89  LGCDGDESLAVNFVFKL-----------NPRDK 111
           LGC+ DESLAVNF FKL           NPRD+
Sbjct: 417 LGCELDESLAVNFAFKLYRMPDESVSTENPRDE 449

[Close]
BLAST of Cp4.1LG09g04470 vs. NCBI nr
Match: gi|1009123217|ref|XP_015878424.1| (PREDICTED: scarecrow-like protein 8 [Ziziphus jujuba])

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-13
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 38  IMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESL 97
           +M  +T VAENG +ERLK   E+LS+LA+ L +  KFN+V Q+L +LTRESLGC+ DE L
Sbjct: 401 MMVKITTVAENGGEERLKLVRETLSQLAERLRVPLKFNVVSQKLGELTRESLGCEADEFL 460

Query: 98  AVNFVFKL-----------NPRDK 111
            VNF FKL           NPRD+
Sbjct: 461 VVNFAFKLYRMPDESVSTENPRDE 484

[Close]
BLAST of Cp4.1LG09g04470 vs. NCBI nr
Match: gi|951015231|ref|XP_014510787.1| (PREDICTED: scarecrow-like protein 8 [Vigna radiata var. radiata])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1 

Query: 28  EITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRE 87
           E++   KG   +  +  V EN  DE++  A   L  LA++LGIGFKF ++ + +A+LTRE
Sbjct: 368 ELSLRRKGSPAVVKIIAVTENSADEKMSSAGVMLGRLAEQLGIGFKFKVLTRRIAELTRE 427

Query: 88  SLGCDGDESLAVNFVFKL-----------NPRDK 111
           SLGCD DE LAVNF F+L           NPRD+
Sbjct: 428 SLGCDADEVLAVNFAFRLYKMPDESVSTENPRDE 461

[Close]
BLAST of Cp4.1LG09g04470 vs. NCBI nr
Match: gi|920692710|gb|KOM35935.1| (hypothetical protein LR48_Vigan02g208500 [Vigna angularis])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 28  EITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRE 87
           E++   KG   +  +  V EN  DER+  A   L  LA++LGIGF+F ++ Q +A+LTRE
Sbjct: 363 ELSLRRKGYPAVVKIIAVTENSADERMSSAGVMLGRLAEQLGIGFEFKVLTQRIAELTRE 422

Query: 88  SLGCDGDESLAVNFVFKL-----------NPRDK 111
           SLGC+ DE+LAVNF F+L           NPRD+
Sbjct: 423 SLGCEADEALAVNFAFRLYKIPDESVSTENPRDE 456

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g04470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SCL8_ARATH1.6e-0946.15Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1[more]
BLAST of Cp4.1LG09g04470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK19_CUCSA9.3e-2058.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140530 PE=3 SV=1[more]
A0A0S3SN64_PHAAN1.1e-1244.68Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G082900 PE=... [more]
A0A0L9TZG3_PHAAN1.1e-1244.68Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g208500 PE=3 SV=1[more]
V7BC54_PHAVU7.2e-1245.16Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G073500g PE=3 SV=1[more]
I1NGX2_SOYBN9.4e-1244.68Uncharacterized protein OS=Glycine max GN=GLYMA_20G162100 PE=3 SV=1[more]
BLAST of Cp4.1LG09g04470 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52510.19.3e-1146.15 SCARECROW-like 8[more]
BLAST of Cp4.1LG09g04470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778699053|ref|XP_011654649.1|1.3e-1958.06PREDICTED: scarecrow-like protein 8 [Cucumis sativus][more]
gi|659074287|ref|XP_008437524.1|3.9e-1956.99PREDICTED: scarecrow-like protein 8 [Cucumis melo][more]
gi|1009123217|ref|XP_015878424.1|3.2e-1352.38PREDICTED: scarecrow-like protein 8 [Ziziphus jujuba][more]
gi|951015231|ref|XP_014510787.1|1.6e-1244.68PREDICTED: scarecrow-like protein 8 [Vigna radiata var. radiata][more]
gi|920692710|gb|KOM35935.1|1.6e-1244.68hypothetical protein LR48_Vigan02g208500 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005202TF_GRAS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g04470.1Cp4.1LG09g04470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005202Transcription factor GRASPFAMPF03514GRAScoord: 41..106
score: 5.4
IPR005202Transcription factor GRASPROFILEPS50985GRAScoord: 1..112
score: 9
NoneNo IPR availablePANTHERPTHR31636FAMILY NOT NAMEDcoord: 47..106
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g04470Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g04470Wax gourdcpewgoB0059
Cp4.1LG09g04470Cucurbita pepo (Zucchini)cpecpeB040
Cp4.1LG09g04470Cucumber (Gy14) v1cgycpeB0804
Cp4.1LG09g04470Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g04470Cucurbita maxima (Rimu)cmacpeB700
Cp4.1LG09g04470Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g04470Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g04470Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g04470Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g04470Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g04470Watermelon (Charleston Gray)cpewcgB042
Cp4.1LG09g04470Watermelon (97103) v1cpewmB029
Cp4.1LG09g04470Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g04470Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g04470Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g04470Silver-seed gourdcarcpeB1017
Cp4.1LG09g04470Silver-seed gourdcarcpeB1169