Cp4.1LG09g04030 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g04030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionVacuolar protein sorting-associated protein 33-like protein
LocationCp4.1LG09 : 2553779 .. 2554265 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATATATGCATCGGAAGTCGACCGCCATCTTCTTCCAGCGAGGGAAAGGGAAATTCTCTGTTAAAACGAGTTGAATTGAAGTTCAGAGGAAAAGAAAGATCTTCTACTTGGATGGCGCAGATTCCGAACTTGGATAATGCTCCTCTGAATCTCCGAGCACTCAGGTTCTTTATTCTGATCAACGCTTCTTAATTTACTGCTAATTTCTTTCAAACCGTGTCGTCAAGTTTTCATGGTCGGATTTTCAGGGAGCAATCTCAGAAGGAGCTTATAAACATCCTGAAAAATGTGAGTTCCTTTCCCGCGGTTAACAATAATGGCGAATTTGAGTTTCATTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCAAGATTGAGTTTGCAGCCAACCATATTCCAAATTTCCAGACGATAGTACTTTTTCTTAACCAGCAGATCTTAAACAGATAA

mRNA sequence

ATGAGAAAAGAAAGATCTTCTACTTGGATGGCGCAGATTCCGAACTTGGATAATGCTCCTCTGAATCTCCGAGCACTCAGGGAGCAATCTCAGAAGGAGCTTATAAACATCCTGAAAAATGTGAGTTCCTTTCCCGCGATTGAGTTTGCAGCCAACCATATTCCAAATTTCCAGACGATAGTACTTTTTCTTAACCAGCAGATCTTAAACAGATAA

Coding sequence (CDS)

ATGAGAAAAGAAAGATCTTCTACTTGGATGGCGCAGATTCCGAACTTGGATAATGCTCCTCTGAATCTCCGAGCACTCAGGGAGCAATCTCAGAAGGAGCTTATAAACATCCTGAAAAATGTGAGTTCCTTTCCCGCGATTGAGTTTGCAGCCAACCATATTCCAAATTTCCAGACGATAGTACTTTTTCTTAACCAGCAGATCTTAAACAGATAA

Protein sequence

MRKERSSTWMAQIPNLDNAPLNLRALREQSQKELINILKNVSSFPAIEFAANHIPNFQTIVLFLNQQILNR
Homology
[Close]
BLAST of Cp4.1LG09g04030 vs. TrEMBL
Match: A0A0A0KWR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622610 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-08
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNLRALREQSQKELINILKN+
Sbjct: 1  MAQIPNLDNAPLNLRALREQSQKELINILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. TrEMBL
Match: W9RWW6_9ROSA (Vacuolar protein sorting-associated protein 33-like protein OS=Morus notabilis GN=L484_017063 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNL ALREQSQKELINILKN+
Sbjct: 1  MAQIPNLDNAPLNLTALREQSQKELINILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. TrEMBL
Match: M5XEY4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003188mg PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-07
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNL +LREQSQKEL+NILKN+
Sbjct: 1  MAQIPNLDNAPLNLNSLREQSQKELVNILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. TrEMBL
Match: B9S0W7_RICCO (Vacuolar protein sorting, putative OS=Ricinus communis GN=RCOM_1538620 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 27/32 (84.38%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDN+PLNLR+LREQSQKEL+NIL+N+
Sbjct: 1  MAQIPNLDNSPLNLRSLREQSQKELVNILRNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. TrEMBL
Match: A0A0J8C2E8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g161380 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-06
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAP+NL ALREQSQKELI ILKN+
Sbjct: 1  MAQIPNLDNAPINLNALREQSQKELITILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. TAIR10
Match: AT3G54860.2 (AT3G54860.2 Sec1/munc18-like (SM) proteins superfamily)

HSP 1 Score: 49.7 bits (117), Expect = 8.8e-07
Identity = 20/32 (62.50%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIP+L+NAPLNL+++R++S++EL+N+LK+V
Sbjct: 1  MAQIPSLENAPLNLKSIRDKSERELVNLLKDV 32

[Close]
BLAST of Cp4.1LG09g04030 vs. NCBI nr
Match: gi|659091982|ref|XP_008446837.1| (PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNLRALREQSQKELINILKN+
Sbjct: 1  MAQIPNLDNAPLNLRALREQSQKELINILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. NCBI nr
Match: gi|778706545|ref|XP_011655870.1| (PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNLRALREQSQKELINILKN+
Sbjct: 1  MAQIPNLDNAPLNLRALREQSQKELINILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. NCBI nr
Match: gi|659091984|ref|XP_008446838.1| (PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNLRALREQSQKELINILKN+
Sbjct: 1  MAQIPNLDNAPLNLRALREQSQKELINILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. NCBI nr
Match: gi|449449276|ref|XP_004142391.1| (PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNLRALREQSQKELINILKN+
Sbjct: 1  MAQIPNLDNAPLNLRALREQSQKELINILKNI 32

[Close]
BLAST of Cp4.1LG09g04030 vs. NCBI nr
Match: gi|659091986|ref|XP_008446839.1| (PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X4 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 10 MAQIPNLDNAPLNLRALREQSQKELINILKNV 42
          MAQIPNLDNAPLNLRALREQSQKELINILKN+
Sbjct: 1  MAQIPNLDNAPLNLRALREQSQKELINILKNI 32

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g04030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g04030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWR0_CUCSA8.9e-0896.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622610 PE=3 SV=1[more]
W9RWW6_9ROSA4.4e-0793.75Vacuolar protein sorting-associated protein 33-like protein OS=Morus notabilis G... [more]
M5XEY4_PRUPE9.8e-0787.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003188mg PE=3 SV=1[more]
B9S0W7_RICCO1.3e-0684.38Vacuolar protein sorting, putative OS=Ricinus communis GN=RCOM_1538620 PE=3 SV=1[more]
A0A0J8C2E8_BETVU2.9e-0687.50Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g161380 PE=3 S... [more]
BLAST of Cp4.1LG09g04030 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54860.28.8e-0762.50 Sec1/munc18-like (SM) proteins superfamily[more]
BLAST of Cp4.1LG09g04030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091982|ref|XP_008446837.1|1.3e-0796.88PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X2 [Cu... [more]
gi|778706545|ref|XP_011655870.1|1.3e-0796.88PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X1 [Cu... [more]
gi|659091984|ref|XP_008446838.1|1.3e-0796.88PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X3 [Cu... [more]
gi|449449276|ref|XP_004142391.1|1.3e-0796.88PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X2 [Cu... [more]
gi|659091986|ref|XP_008446839.1|1.3e-0796.88PREDICTED: vacuolar protein-sorting-associated protein 33 homolog isoform X4 [Cu... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006904 vesicle docking involved in exocytosis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
cellular_component GO:0009705 plant-type vacuole membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g04030.1Cp4.1LG09g04030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g04030MELO3C012405.2Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g04030CsaV3_5G036050Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g04030Bhi07G000714Wax gourdcpewgoB0055
Cp4.1LG09g04030CsGy5G026360Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g04030Carg20709Silver-seed gourdcarcpeB0677
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g04030Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG09g04030Cucurbita pepo (Zucchini)cpecpeB040
Cp4.1LG09g04030Cucumber (Gy14) v1cgycpeB0804
Cp4.1LG09g04030Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g04030Cucurbita maxima (Rimu)cmacpeB699
Cp4.1LG09g04030Cucurbita maxima (Rimu)cmacpeB700
Cp4.1LG09g04030Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g04030Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g04030Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g04030Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g04030Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g04030Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g04030Watermelon (Charleston Gray)cpewcgB055
Cp4.1LG09g04030Watermelon (97103) v1cpewmB023
Cp4.1LG09g04030Watermelon (97103) v1cpewmB031
Cp4.1LG09g04030Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g04030Cucumber (Gy14) v2cgybcpeB709
Cp4.1LG09g04030Silver-seed gourdcarcpeB0958
Cp4.1LG09g04030Silver-seed gourdcarcpeB1169