Cp4.1LG09g03970 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g03970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG09 : 2427955 .. 2428372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGAGATGACTCCGGCTTTGGTGGTCTCGGCTTCATTATGTTCAGTGACCGCTCTCTTTCGTGGTGAAATCTTAAGCAGCATCAGGAGCAAGGCAGTGTGTCGTCTGATTGTCTTATCTCGCGTTCTCGATCAAACCTGGTTTGATCGCTAATGGTTTGCGTTTAGAAGGAGAGCGTTCTTCGTTTTTTGCTGGCTTTTCGTTGCTCATGTTGTTCATTGTTTCGTTGTTTCTGGAGAGTCAGATGACTTCGGTGTTCTTACTGCAGAGGATTCCTCGGAGGTTCATAGAAGGTAATGATCTCGATCGATTGCGCTTTGAGGATCTTTTTGGTTATCAGAAATCGAAGCTTGCTCTGGTGAGTGTTCGAGTTCCGAATCTTTCTTGTATTCTCAAGTTATGGTTTAATTAG

mRNA sequence

ATGGCGATGGAGATGACTCCGGCTTTGGTGGTCTCGGCTTCATTATGTTCAGTGACCGCTCTCTTTCGTGGAGAGCGTTCTTCGTTTTTTGCTGGCTTTTCGTTGCTCATGTTGTTCATTGTTTCGTTGTTTCTGGAGAGTCAGATGACTTCGGTGTTCTTACTGCAGAGGATTCCTCGGAGGTTCATAGAAGGTAATGATCTCGATCGATTGCGCTTTGAGGATCTTTTTGGTTATCAGAAATCGAAGCTTGCTCTGGTGAGTGTTCGAGTTCCGAATCTTTCTTGTATTCTCAAGTTATGGTTTAATTAG

Coding sequence (CDS)

ATGGCGATGGAGATGACTCCGGCTTTGGTGGTCTCGGCTTCATTATGTTCAGTGACCGCTCTCTTTCGTGGAGAGCGTTCTTCGTTTTTTGCTGGCTTTTCGTTGCTCATGTTGTTCATTGTTTCGTTGTTTCTGGAGAGTCAGATGACTTCGGTGTTCTTACTGCAGAGGATTCCTCGGAGGTTCATAGAAGGTAATGATCTCGATCGATTGCGCTTTGAGGATCTTTTTGGTTATCAGAAATCGAAGCTTGCTCTGGTGAGTGTTCGAGTTCCGAATCTTTCTTGTATTCTCAAGTTATGGTTTAATTAG

Protein sequence

MAMEMTPALVVSASLCSVTALFRGERSSFFAGFSLLMLFIVSLFLESQMTSVFLLQRIPRRFIEGNDLDRLRFEDLFGYQKSKLALVSVRVPNLSCILKLWFN
Homology
[Close]
BLAST of Cp4.1LG09g03970 vs. TrEMBL
Match: A0A0A0KUV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616910 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-07
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 22  FRGERSSFF--AGFSLLMLFIVSLFLESQMTSVFLL----------------------QR 81
           F   R SFF     +LL+LF+++ +LES MTSVFL                       +R
Sbjct: 63  FAFSRRSFFIFTAIALLLLFVLTFYLESLMTSVFLKRSEKAWSRDAELKVGVTLMFAPRR 122

Query: 82  IPRRFIEGNDLDRLRFEDLFGYQKSKLALVSVRVPNLSCIL 99
           IPR+FIE N++D++  E+ FG++  +LALVS RV  LS IL
Sbjct: 123 IPRKFIESNEVDQMHSENRFGFRNPRLALVSDRVSILSYIL 163

[Close]
BLAST of Cp4.1LG09g03970 vs. NCBI nr
Match: gi|659092332|ref|XP_008447017.1| (PREDICTED: uncharacterized protein LOC103489564 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 

Query: 26  RSSF-FAGFSLLMLFIVSLFLESQMTSVFLL----------------------QRIPRRF 85
           RS F FAGFSLL+LF+V+ +LES MTSVFL                       QRIPR+F
Sbjct: 68  RSIFAFAGFSLLLLFVVTFYLESLMTSVFLKRSEKAWSRDAELKLGMTLKFAPQRIPRKF 127

Query: 86  IEGNDLDRLRFEDLFGYQKSKLALV 88
           IEGN++DRL  ++ FG++K +LAL+
Sbjct: 128 IEGNEVDRLHSDNRFGFRKPRLALI 152

[Close]
BLAST of Cp4.1LG09g03970 vs. NCBI nr
Match: gi|700197045|gb|KGN52222.1| (hypothetical protein Csa_5G616910 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 9.2e-07
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 22  FRGERSSFF--AGFSLLMLFIVSLFLESQMTSVFLL----------------------QR 81
           F   R SFF     +LL+LF+++ +LES MTSVFL                       +R
Sbjct: 63  FAFSRRSFFIFTAIALLLLFVLTFYLESLMTSVFLKRSEKAWSRDAELKVGVTLMFAPRR 122

Query: 82  IPRRFIEGNDLDRLRFEDLFGYQKSKLALVSVRVPNLSCIL 99
           IPR+FIE N++D++  E+ FG++  +LALVS RV  LS IL
Sbjct: 123 IPRKFIESNEVDQMHSENRFGFRNPRLALVSDRVSILSYIL 163

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g03970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g03970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUV3_CUCSA6.4e-0740.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G616910 PE=4 SV=1[more]
BLAST of Cp4.1LG09g03970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g03970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092332|ref|XP_008447017.1|1.7e-0848.24PREDICTED: uncharacterized protein LOC103489564 [Cucumis melo][more]
gi|700197045|gb|KGN52222.1|9.2e-0740.59hypothetical protein Csa_5G616910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g03970.1Cp4.1LG09g03970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g03970CmaCh18G009250Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g03970MELO3C012379.2Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g03970Bhi07G000674Wax gourdcpewgoB0055
Cp4.1LG09g03970Carg01926Silver-seed gourdcarcpeB1169
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g03970Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g03970Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG09g03970Cucurbita pepo (Zucchini)cpecpeB040
Cp4.1LG09g03970Cucumber (Gy14) v1cgycpeB0804
Cp4.1LG09g03970Cucurbita maxima (Rimu)cmacpeB699
Cp4.1LG09g03970Cucurbita maxima (Rimu)cmacpeB700
Cp4.1LG09g03970Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g03970Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g03970Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g03970Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g03970Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g03970Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g03970Watermelon (Charleston Gray)cpewcgB055
Cp4.1LG09g03970Watermelon (97103) v1cpewmB023
Cp4.1LG09g03970Watermelon (97103) v1cpewmB031
Cp4.1LG09g03970Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g03970Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g03970Cucumber (Gy14) v2cgybcpeB709
Cp4.1LG09g03970Silver-seed gourdcarcpeB0677
Cp4.1LG09g03970Silver-seed gourdcarcpeB0958