Cp4.1LG09g02310 (gene) Cucurbita pepo (Zucchini)

BLAST of Cp4.1LG09g02310 vs. Swiss-Prot
Match: RPO1B_TOBAC (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2)

HSP 1 Score: 1117.1 bits (2888), Expect = 0.0e+00
Identity = 581/883 (65.80%), Postives = 670/883 (75.88%), Query Frame = 1

Query: 528  GVLNHAKGYATAAEAAIS--EEDLSGSEEIQELMEELSKQDKVESHFKQPK--KMVDGMR 587
            G L   + Y +AAEA +S  EED+   +EIQEL+EE+ K+++      QPK  K + GM 
Sbjct: 106  GSLGRLRSYGSAAEAIVSTSEEDI---DEIQELIEEMDKENEALKANLQPKQPKTIGGMG 165

Query: 588  VGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAI 647
            VGKYN LR+RQIK+ETEAWEEAA+EYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAI
Sbjct: 166  VGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 225

Query: 648  AADQEY-----DKGAHL----FLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGR 707
            AA+Q+      ++GA+      LP+ +M +    +    +          V +A   +G 
Sbjct: 226  AAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGE 285

Query: 708  TKWRVNKRVLSIIDRIWASGGRLADLVDRXTEGDTEPVVEDQEKVAKEQDKLRKKVTNLM 767
                   R+   +++   S     DL +  T GD          + KE+++LRKKV  LM
Sbjct: 286  AIEH-EARIHRFLEKTKKSNALSGDLEE--TPGD----------MMKERERLRKKVKILM 345

Query: 768  KKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPA 827
            KKQKLRQVR IVK+ D  KPWGQD  VKVGCRLIQ+L+ETAYIQPP DQL  GPPDIRPA
Sbjct: 346  KKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPA 405

Query: 828  FVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGA 887
            FVHTLKT+  E  K SRRYGVI+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKG 
Sbjct: 406  FVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGG 465

Query: 888  HLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRV-------------- 947
            +LFLPSY+MR HGAKQQREAVKRVPKKQLEPVF+ALDTLG TKWRV              
Sbjct: 466  YLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWAS 525

Query: 948  -------------PLPEEPTVEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLAVARK 1007
                         PLPE P  EDEAEIRKWKWK+K  KKEN ERHSQRCDIELKLAVARK
Sbjct: 526  GGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARK 585

Query: 1008 MKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGESGLRWLKIHLAN 1067
            MK+E+GFYYPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLG SGLRWLKIHLAN
Sbjct: 586  MKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLAN 645

Query: 1068 LYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALR 1127
            +Y GGVDKLSY+ R++F+ENHL++IFDSA+RPLEG RWWLGAEDPFQCLA CIN++EALR
Sbjct: 646  VYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALR 705

Query: 1128 SPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL--------NNPA----GVNAIVLDI 1187
            SPSPET +S+MP+HQDGSCNGLQHYAALGRDKL          + PA    G+ A VLDI
Sbjct: 706  SPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDI 765

Query: 1188 IRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGARDQIKKRLKERASI 1247
            ++ DA KDPA +PN + ARLLINQVDRKLVKQTVMTSVYGVTY+GARDQIKKRLKER  I
Sbjct: 766  MKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVI 825

Query: 1248 ADDSQLFAASCYAAR-------------------------VIASENQPVRWTTPLGLPVV 1307
             DD++LFAA+CYAA+                         +IA EN PVRWTTPLGLPVV
Sbjct: 826  EDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVV 885

Query: 1308 QPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPNFVHSLDGSHMMMTAVACRRAG 1334
            QPYR+LGRHLIKTSLQ+L LQRETDKVM  RQ+TAFPPNFVHSLDGSHMMMTA+AC+ +G
Sbjct: 886  QPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESG 945

BLAST of Cp4.1LG09g02310 vs. Swiss-Prot
Match: RPOT1_NICSY (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1)

HSP 1 Score: 1108.2 bits (2865), Expect = 0.0e+00
Identity = 576/883 (65.23%), Postives = 672/883 (76.10%), Query Frame = 1

Query: 528  GVLNHAKGYATAAEA--AISEEDLSGSEEIQELMEELSKQDKVESHFKQPK--KMVDGMR 587
            G L   + Y +AAEA  + SEED+   +EIQEL+EE++K+++      QPK  K + GM 
Sbjct: 106  GSLGFLRSYGSAAEAIASTSEEDI---DEIQELIEEMNKENEALKTNLQPKQPKTIGGMG 165

Query: 588  VGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAI 647
            VGKYN+LR+RQIK+ETEAWEEAA+EYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAI
Sbjct: 166  VGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 225

Query: 648  AADQEY-----DKGAHL----FLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGR 707
            AA+Q+      ++GA+      LP+ +M +    +    +          V +A   +G 
Sbjct: 226  AAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGE 285

Query: 708  TKWRVNKRVLSIIDRIWASGGRLADLVDRXTEGDTEPVVEDQEKVAKEQDKLRKKVTNLM 767
                   R+   +++   S     DL D  T GD          + KE++++RKKV  LM
Sbjct: 286  AIEH-EARIHRFLEKTKKSNALSGDLED--TPGD----------IMKERERVRKKVKILM 345

Query: 768  KKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPA 827
            KKQKL+QVR IVK+ D  KPWGQD  VKVGCRLIQ+L+ETAYIQPP DQL   PPDIRPA
Sbjct: 346  KKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPA 405

Query: 828  FVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGA 887
            FVHTLKT+  E  K SRRYGVI+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKGA
Sbjct: 406  FVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGA 465

Query: 888  HLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWR--------------- 947
            +LFLPSY+MR HGAKQQREAVKRVPKKQLEPVF+ALDTLG TKWR               
Sbjct: 466  YLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWAS 525

Query: 948  ------------VPLPEEPTVEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLAVARK 1007
                        VPLPEEP  EDEA+IRKWKWK+K  KKEN ERHSQRCDIELKLAVARK
Sbjct: 526  GGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARK 585

Query: 1008 MKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGESGLRWLKIHLAN 1067
            MK+E+GFYYPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLG+SGLRWLKIHLAN
Sbjct: 586  MKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN 645

Query: 1068 LYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALR 1127
            +Y GGVDKLSY+ R++F+ENH+++IFDSA+RPLEG RWWLGAEDPFQCLA CIN++EALR
Sbjct: 646  VYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALR 705

Query: 1128 SPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL--------NNPA----GVNAIVLDI 1187
            SPSPET +S+MP+HQDGSCNGLQHYAALGRD L          + PA    G+ A VLDI
Sbjct: 706  SPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDI 765

Query: 1188 IRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGARDQIKKRLKERASI 1247
            ++ DA KDPA +PN + ARLLINQVDRKLVKQTVMTSVYGVTY+GARDQIK+RLKER  I
Sbjct: 766  MKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVI 825

Query: 1248 ADDSQLFAASCYAAR-------------------------VIASENQPVRWTTPLGLPVV 1307
             DD++LFAA+CYAA+                         +IA EN PVRWTTPLGLPVV
Sbjct: 826  EDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVV 885

Query: 1308 QPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPNFVHSLDGSHMMMTAVACRRAG 1334
            QPYR+LGRHLIKTSLQ+L LQRETDKVM  RQ+TAFPPNFVHSLDGSHMMMTA+AC+ +G
Sbjct: 886  QPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESG 945

BLAST of Cp4.1LG09g02310 vs. Swiss-Prot
Match: RPOT2_NICSY (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2)

HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 574/968 (59.30%), Postives = 690/968 (71.28%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDT---FFSRKVIEDSISVEEIRSSRTLGSLKSCCLLEGSRGISFFHS 510
            MWRNI+K+ +SR      F S+      +   +    +     +S   +  S  +  F +
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 511  REVGFAKSNFAHSSEPVAFYGVLNH---AKGYATAAEAAI-----SEEDLSGSEEIQELM 570
                     F   S P+    V N+    K YA+ AEA       +EED+S  +E+ EL+
Sbjct: 95   LGEYLPGDEFL--SRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELL 154

Query: 571  EELSKQDKVESHFKQPKK--MVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMC 630
             EL K++K +  F++ K+  +  GM   KY  L++RQ+K+ETEAWE+AA+EY+ELL DMC
Sbjct: 155  TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 214

Query: 631  EQKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVKRV 690
            EQKLAPNLPY+KSLFLGWFEPLRD IA +QE          +Y    +       AV  +
Sbjct: 215  EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKS-KAAYAKYFYQLPADMMAVITM 274

Query: 691  PKKQLEPVFEALDTLG-RTKWRVNKRVLSIIDRIWASGGRLADLVDRXTE--GDTEPVVE 750
             K     +   L T G     RV +  L I D I     R+ + +++  +   + +   E
Sbjct: 275  HK-----LMGLLMTGGDHGTARVVQAALVIGDAI-EQEVRIHNFLEKTKKQKAEKDKQKE 334

Query: 751  DQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIET 810
            D E V +EQ+KLRKKVTNLMKKQKLR V  IV+  D  KPWGQDA  KVG RLI LL++T
Sbjct: 335  DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQT 394

Query: 811  AYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMV 870
            AYIQPP +QL   PPDIRPAFVH+++T+ KE +  SRRYG+I+CD LV +GLE+TARHMV
Sbjct: 395  AYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMV 454

Query: 871  IPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLG 930
            IPYMPMLVPP+ WTGYDKG HL+LPSYVMR HGA+QQREAVKR  + QL+PVFEALDTLG
Sbjct: 455  IPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLG 514

Query: 931  RTKWRV---------------------------PLPEEPTVEDEAEIRKWKWKLKAAKKE 990
             TKWR+                           PLPEEP  EDEA   KW+WK+K+ KKE
Sbjct: 515  NTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKE 574

Query: 991  NSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEF 1050
            N ERHSQRCDIELKLAVARKMK+EE F+YPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEF
Sbjct: 575  NRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEF 634

Query: 1051 AEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWL 1110
            AEGRPLGESGLRWLKIHLANL+AGGV+KLS + RI FTENH+D+IFDS+D+PLEG RWWL
Sbjct: 635  AEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWL 694

Query: 1111 GAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL----- 1170
             AEDPFQCLAVCINLSEA+RS SPET++SH+PVHQDGSCNGLQHYAALGRDKL       
Sbjct: 695  NAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNL 754

Query: 1171 ---NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYG 1230
                 PA    G+ A VLDI++ DA++DPA  P+A+ AR+L+NQVDRKLVKQTVMTSVYG
Sbjct: 755  VAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYG 814

Query: 1231 VTYMGARDQIKKRLKERASIADDSQLFAASCYAA-------------------------R 1290
            VTY+GARDQIK+RLKER +IADDS+LF A+CYAA                         +
Sbjct: 815  VTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAK 874

Query: 1291 VIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPNF 1339
            +IASEN+PVRWTTPLGLPVVQPYR++GRHLIKTSLQ+L LQRET+KVM  RQ+TAFPPNF
Sbjct: 875  IIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNF 934

BLAST of Cp4.1LG09g02310 vs. Swiss-Prot
Match: RPO2B_TOBAC (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 1072.8 bits (2773), Expect = 2.8e-312
Identity = 571/972 (58.74%), Postives = 697/972 (71.71%), Query Frame = 1

Query: 451  MWRNIVKRAASR--RDTFFSRK--------VIEDSISVEEIRSSRTLGSLKSCCLLEGSR 510
            MWRNI+K+ +SR  +   FS K          +DS+  +  +  R+L  +    ++ G +
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKF-RSLIPISCSNIVMGFQ 94

Query: 511  GISFFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAI-----SEEDLSGSEEI 570
             +  +   +   ++    +      F       K YA+ AEA       +EED+S  +E+
Sbjct: 95   NLGEYLPGDEFLSRPLLKNQVNSNDFCC----RKSYASVAEAVAVSSTDAEEDVSVVDEV 154

Query: 571  QELMEELSKQDKVESHFKQPKK--MVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELL 630
            QEL+ EL K++K +  F++ K+  +  GM   KY  L++RQ+K+ETEAWE+AA+EY+ELL
Sbjct: 155  QELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELL 214

Query: 631  TDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREA 690
             DMCEQKLAPNLPY+KSLFLGWFEPLRD IA +QE          +Y   ++       A
Sbjct: 215  FDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKS-KAAYAKYLYQLPADMMA 274

Query: 691  VKRVPKKQLEPVFEALDTLG-RTKWRVNKRVLSIIDRIWASGGRLADLVDRXTE--GDTE 750
            V  + K     +   L T G     RV +  L I D I     R+ + +++  +   + +
Sbjct: 275  VITMHK-----LMGLLMTGGDHGTARVVQAALVIGDAI-EQEVRIHNFLEKTKKQKAEKD 334

Query: 751  PVVEDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQL 810
               ED E V +EQ+KLRKKVTNLMKKQKLR V  IV+  D  KPWGQDA  KVG RLI+L
Sbjct: 335  KQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIEL 394

Query: 811  LIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTA 870
            L++TAYIQPP +QL   PPDIRPAF+H+++T+ KE +  SRRYG+I+CD LV +GLE+TA
Sbjct: 395  LLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTA 454

Query: 871  RHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEAL 930
            RHMVIPYMPMLVPP+ WTGYDKG HL+LPSYVMR HGA+QQREAVKR  + QL+PVFEAL
Sbjct: 455  RHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEAL 514

Query: 931  DTLGRTKWRV---------------------------PLPEEPTVEDEAEIRKWKWKLKA 990
            DTLG TKWR+                           PLPEEP  EDEA   KW+WK+K+
Sbjct: 515  DTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKS 574

Query: 991  AKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRG 1050
             KKEN ERHSQRCDIELKLAVARKMK+EEGF+YPHN+DFRGRAYPMHPHLNHLGSD+CRG
Sbjct: 575  VKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRG 634

Query: 1051 ILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGN 1110
            +L FAEGRPLGESGLRWLKIHLANL+AGGV+KLS + RI+FTENH+D+IFDSAD+PLEG 
Sbjct: 635  VLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGR 694

Query: 1111 RWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL- 1170
            RWWL AEDPFQCLAVCINLSEA+RS SPET++SH+PVHQDGSCNGLQHYAALGRD+L   
Sbjct: 695  RWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAA 754

Query: 1171 -------NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMT 1230
                     PA    G+ A VLDI++ DA++DPA  P+A+ AR L+NQVDRKLVKQTVMT
Sbjct: 755  AVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMT 814

Query: 1231 SVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAA---------------------- 1290
            SVYGVTY+GARDQIK+RLKER +IADDS+LF A+CYAA                      
Sbjct: 815  SVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLG 874

Query: 1291 ---RVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAF 1339
               ++IASEN+PVRWTTPLGLPVVQPYR++GRHLIKTSLQ+L LQ+ET+KVM  RQ+TAF
Sbjct: 875  ECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAF 934

BLAST of Cp4.1LG09g02310 vs. Swiss-Prot
Match: RPOT2_ARATH (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1)

HSP 1 Score: 1009.6 bits (2609), Expect = 3.4e-293
Identity = 546/964 (56.64%), Postives = 655/964 (67.95%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRK------VIEDSISVEEIRSSRTLGSLKSCCLLEGSRGISF 510
            MWRNI K+A SR     +        ++    S+     S     L S C  +G R +S 
Sbjct: 40   MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLGSPCHGKGFRCLSG 99

Query: 511  FHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELSK 570
               RE  F+KS    S       G L  A+GY + AE  +   D+    E+ EL++E+ K
Sbjct: 100  ITRREE-FSKSERCLS-------GTL--ARGYTSVAEEEVLSTDVEEEPEVDELLKEMKK 159

Query: 571  QDKVESHFKQPKKMVD--GMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLA 630
            + K ESH     K  D  GM   K+  L +RQ+K+ETE WE AA EY ELLTDMCEQKLA
Sbjct: 160  EKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLA 219

Query: 631  PNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQ-REAVKRVPKKQ 690
            PNLPY+KSLFLGWFEPLRDAIA DQE            + R+  +K      + ++P  +
Sbjct: 220  PNLPYVKSLFLGWFEPLRDAIAKDQE------------LYRLGKSKATYAHYLDQLPADK 279

Query: 691  LEPVFEALDTLGRTKWRVNKRVLSIIDRIWASGG------RLADLVDRXTEGDT--EPVV 750
            +  V      +G      +   + ++      G       R+   +D+  +GD   E   
Sbjct: 280  IS-VITMHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGG 339

Query: 751  EDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIE 810
             + E   KEQDKLRKKV  L+KKQKL  VR I++ HD+ KPW  D   KVG RLI+LL+ 
Sbjct: 340  VENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVR 399

Query: 811  TAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHM 870
            TAYIQ P DQ     PD+RPAFVHT K + K +  + R+YGVIECDPLVR+GLEK+ R+ 
Sbjct: 400  TAYIQSPADQQDNDLPDVRPAFVHTFK-VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYA 459

Query: 871  VIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTL 930
            V+PYMPMLVPPL W+GYDKGA+LFL SY+M+ HGAKQQREA+K  PK QL+PVFEALDTL
Sbjct: 460  VMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTL 519

Query: 931  GRTKWRV---------------------------PLPEEPTVEDEAEIRKWKWKLKAAKK 990
            G TKWRV                           PLPE+P  EDE  ++KWKW++K+AKK
Sbjct: 520  GSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKK 579

Query: 991  ENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILE 1050
             NSERHSQRCD ELKL+VARKMK+EE FYYPHN+DFRGRAYPM PHLNHLGSD+CRG+LE
Sbjct: 580  VNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLE 639

Query: 1051 FAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWW 1110
            FAEGRP+G SGLRWLKIHLANLYAGGVDKLS   R++FTENHLD+IFDSADRPLEG+RWW
Sbjct: 640  FAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWW 699

Query: 1111 LGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSLN--- 1170
            L AEDPFQCLAVCI+L+EALRSPSPET LSH+P+HQDGSCNGLQHYAALGRD L      
Sbjct: 700  LQAEDPFQCLAVCISLTEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVN 759

Query: 1171 -----NPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVY 1230
                  PA    G+   VLDI+R DA++DP   P AL AR L+NQVDRKLVKQTVMTSVY
Sbjct: 760  LVAGEKPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVY 819

Query: 1231 GVTYMGARDQIKKRLKERASIADDSQLFAASCYAARV----------------------- 1290
            GVTY+GARDQIK+RLKER+   D+ ++F A+CYAA+V                       
Sbjct: 820  GVTYIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECA 879

Query: 1291 --IASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPN 1334
              IASEN+ VRWTTPLGLPVVQPY Q+G  L+KTSLQ L+LQ ETD+V+  RQ+TAFPPN
Sbjct: 880  KIIASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPN 939

BLAST of Cp4.1LG09g02310 vs. TrEMBL
Match: A0A0A0KR04_CUCSA (DNA-directed RNA polymerase OS=Cucumis sativus GN=Csa_5G607420 PE=3 SV=1)

HSP 1 Score: 1254.2 bits (3244), Expect = 0.0e+00
Identity = 651/953 (68.31%), Postives = 738/953 (77.44%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFS-------RKVIEDSISVEEIRSSRTLGSLKSCCLLEGSRGIS 510
            MWRN+ K AASR+   FS       RKV ED I +++IRSSR+L +L +CC   GS  I 
Sbjct: 1    MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60

Query: 511  FFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELS 570
            F H ++VGF  SNF HSS PV FYGVL HAKGYATAAEAAI E DLSGSEEIQE+ME L+
Sbjct: 61   FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120

Query: 571  KQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAP 630
            KQDKVE HFKQPK MVDG R  KY++LRKRQIK+ETEAWEEAA+EYQ+L+ D+CEQKLAP
Sbjct: 121  KQDKVELHFKQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIADICEQKLAP 180

Query: 631  NLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLE 690
            NLPY+KSLFLGWF+PLRDAI A+QE  K      PS+ +  H       AV  +   +L 
Sbjct: 181  NLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSS-PSHALYFHLLPADMMAV--ITMHKLM 240

Query: 691  PVFEALDTLGRTKWRVNKRVLSIIDRIWASGGRLADLVDRXTEGDTEPVVEDQEKVAKEQ 750
             +  + D  G    RV +    I + I  +  R+ +  ++  +          E++A+  
Sbjct: 241  GLLMS-DIEGGGSVRVTQAASGIGEAI-ENEVRIRNFFEKTKK--------QPEQLAEGH 300

Query: 751  DKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIETAYIQPPMDQ 810
            DKLRKK+T LMK+QKL++V  IVK HD  KPWG DAHVKVGCRLIQLLIETAYIQPP+DQ
Sbjct: 301  DKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWGTDAHVKVGCRLIQLLIETAYIQPPVDQ 360

Query: 811  LGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVP 870
            +G  PPD+RPAFVH+LKT  KE+Q+  +RYGVIECDPLV RG+ KTA HM+IPYMPMLVP
Sbjct: 361  IGDAPPDLRPAFVHSLKTSLKESQRLGKRYGVIECDPLVYRGMVKTAGHMIIPYMPMLVP 420

Query: 871  PLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRV--- 930
            P  WTGYD+GAH FLPSYVMRI GA+QQREAVKR  KKQL PVF+ALD LG TKWRV   
Sbjct: 421  PRKWTGYDQGAHFFLPSYVMRIRGARQQREAVKRASKKQLGPVFKALDILGSTKWRVNKR 480

Query: 931  ------------------------PLPEEPTVEDEAEIRKWKWKLKAAKKENSERHSQRC 990
                                    PLPE+P VEDEAEIR WKWK+KA K+ENSERHSQRC
Sbjct: 481  VLSVIEKIWASGGRLADLVDREDMPLPEQPMVEDEAEIRNWKWKVKAVKRENSERHSQRC 540

Query: 991  DIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGES 1050
            D ELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNH+GSD CRG LEFAEGRPLGES
Sbjct: 541  DTELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHIGSDFCRGTLEFAEGRPLGES 600

Query: 1051 GLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPFQCL 1110
            GLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEG+RWWLGAEDPFQCL
Sbjct: 601  GLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGSRWWLGAEDPFQCL 660

Query: 1111 AVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL--------NNPA-- 1170
            AVCI+LSEALRSPSPETT+SHMPVHQDGSCNGLQHYAALGRDKL          + PA  
Sbjct: 661  AVCIDLSEALRSPSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAEAVNLAAGDKPADV 720

Query: 1171 --GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGARDQ 1230
              G+ + VLDI+RSDA KDPA+NPNALHARLLINQVDRKLVKQTVMTSVYGVTY GA+DQ
Sbjct: 721  YSGIASRVLDIMRSDAAKDPASNPNALHARLLINQVDRKLVKQTVMTSVYGVTYAGAKDQ 780

Query: 1231 IKKRLKERASIADDSQLFAASCYA-------------------------ARVIASENQPV 1290
            I++RLKER+SI ++  LF ASCYA                         A+VIASENQ V
Sbjct: 781  IRQRLKERSSIENERHLFTASCYAAKTTLTAIGEMFEAAKSIMNWLGECAKVIASENQAV 840

Query: 1291 RWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPNFVHSLDGSHM 1333
            RWTTPLGLPVVQPYR+LGRHL+KTSLQ+L+LQRETDKVMA RQ+TAFPPN++HSLD SHM
Sbjct: 841  RWTTPLGLPVVQPYRKLGRHLVKTSLQMLSLQRETDKVMAMRQRTAFPPNYIHSLDSSHM 900

BLAST of Cp4.1LG09g02310 vs. TrEMBL
Match: M5XKH1_PRUPE (DNA-directed RNA polymerase OS=Prunus persica GN=PRUPE_ppa000780mg PE=3 SV=1)

HSP 1 Score: 1226.5 bits (3172), Expect = 0.0e+00
Identity = 641/979 (65.47%), Postives = 738/979 (75.38%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRKVI-----------EDSISVEEIRSSRTLGSLKSCCLLEGS 510
            MWRN+ K+ ASR+    S+              ++S  +++ R       + +  L+ G 
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 511  RGISFFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAIS---EEDLSGSEEIQ 570
            R +    S++    + +  + S P    G  N+AKGYA+ AEA  S   EED SGSEEIQ
Sbjct: 61   RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120

Query: 571  ELMEELSKQDK-VESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTD 630
            E++E+L +++  VESHFKQPK++V GM VGKYN+LRKRQIK+ETEAW+EAA+EYQELL D
Sbjct: 121  EMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLAD 180

Query: 631  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVK 690
            MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQ+  K  +        + H          
Sbjct: 181  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNS------RQSHAPYFDHLPAD 240

Query: 691  RVPKKQLEPVFEALDTL--GRTKWRVNKRVLSI---------IDRIWASGGRLADLVDRX 750
            ++    +  +   L T   G    RV +   +I         I R      +  + +D+ 
Sbjct: 241  KMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKK 300

Query: 751  TEGDTEPVV-------EDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQ 810
             E D+ PV        ++QEK+ KEQ++LRKKV  L+K+QK++QVR IVKE + LKPWGQ
Sbjct: 301  AEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQ 360

Query: 811  DAHVKVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIE 870
            +AHVKVGCRLIQLL++TAYIQPP+DQ+G GPPDIRPAFVH LKTIT++ QKTSRRYGVIE
Sbjct: 361  EAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIE 420

Query: 871  CDPLVRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKR 930
            CDP+VR+G+EKTARHMV+PYMPMLVPP+NWTGYD+GA+LFLPSYVMR HGAKQQRE VKR
Sbjct: 421  CDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKR 480

Query: 931  VPKKQLEPVFEALDTLGRTKWRV---------------------------PLPEEPTVED 990
             P+KQLEPVFEALDTLG TKWRV                           PLPEEP  ED
Sbjct: 481  TPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTED 540

Query: 991  EAEIRKWKWKLKAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMH 1050
            EAEIRKWKWKLKAAKKENSERHSQRCDIELKLA +RKMK+EEGFYYPHNLDFRGRAYPMH
Sbjct: 541  EAEIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMH 600

Query: 1051 PHLNHLGSDMCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLD 1110
            P+LNHLGSDMCRGILEF+EGR LG+SGLRWLKIHLANLYAGGVDKLS+ DR +FTENH+D
Sbjct: 601  PYLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVD 660

Query: 1111 EIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQ 1170
            EIFDSADRPLEG RWWLGAEDPFQCLA CINL EALRSPSPETT+S+MPVHQDGSCNGLQ
Sbjct: 661  EIFDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQ 720

Query: 1171 HYAALGRDKLSL--------NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLIN 1230
            HYAALGRDKL          + PA    G+ A VLDI+R+DAEKDPATNPNALHARLLIN
Sbjct: 721  HYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLIN 780

Query: 1231 QVDRKLVKQTVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAA--------- 1290
            QVDRKLVKQTVMTSVYGVTY+GARDQIK+RLKER SIADD+ LFAA+CYAA         
Sbjct: 781  QVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGE 840

Query: 1291 ----------------RVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRE 1333
                            +VIASENQPVRW TPLGLPVVQPYRQLGRHLIKTSLQVL LQRE
Sbjct: 841  MFEAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRE 900

BLAST of Cp4.1LG09g02310 vs. TrEMBL
Match: A0A0D2T267_GOSRA (DNA-directed RNA polymerase OS=Gossypium raimondii GN=B456_008G174700 PE=3 SV=1)

HSP 1 Score: 1204.1 bits (3114), Expect = 0.0e+00
Identity = 628/969 (64.81%), Postives = 723/969 (74.61%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRKVIEDSIS-------------VEEIRSSRTLGSLKSCCLLE 510
            MWR+++K+A+    + F  +    S+S             + + R S+ +    S C + 
Sbjct: 1    MWRSLLKQASHTHKSKFVPESCTSSLSSSSSTGFCQTSAFINKFRPSKAINHGFSGCPIL 60

Query: 511  GSRGISFFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAIS-EEDLSGSEEIQ 570
            G R    F S++    +  F+HS  P+ F G   + KGYA+AAEA +S E+DLSGSEEI 
Sbjct: 61   GFRENYVFPSQKDCLGRFGFSHSGNPLTFSGKFWNFKGYASAAEAIVSNEDDLSGSEEIN 120

Query: 571  ELMEELSKQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDM 630
            EL+E + K+++ ES  KQPK MV GM V KYN L++RQIK+ETEAWEEAA+EYQEL+ DM
Sbjct: 121  ELVEAMIKEERKESFSKQPKIMVGGMGVAKYNTLKRRQIKIETEAWEEAAKEYQELIADM 180

Query: 631  CEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVKR 690
            C+QKLAPNLPY+KSLFLGWFEPLRD+IAA+QE  KG   F  S+    +       AV  
Sbjct: 181  CQQKLAPNLPYVKSLFLGWFEPLRDSIAAEQEVCKGN--FKISHAAYFNELSADMMAVVT 240

Query: 691  VPKKQLEPVFEALDTLGRTKWRVNKRVLSIIDRI--------WASGGRLADLVDRXTEGD 750
            + K          +T G    RV +    I + I        +    +  +  D+ +  +
Sbjct: 241  MHKLM---GLLMTNTAGTGGIRVVQAACQIGEAIENEARIQKFLEKTKKKNTTDKKSVTE 300

Query: 751  TEPVVEDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLI 810
            +EP   +Q K+AK ++KLRKKVT LMKKQK+ QVR IVK  D  KPWGQ+AHVKVGCRLI
Sbjct: 301  SEPETTEQGKLAKNEEKLRKKVTQLMKKQKVHQVREIVKGRDTSKPWGQEAHVKVGCRLI 360

Query: 811  QLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEK 870
            QLL+E AYIQPP+DQ+G GPPDIRPAFVH LK + K+  K SRRYGVIECDPLVR+GLEK
Sbjct: 361  QLLMENAYIQPPVDQIGDGPPDIRPAFVHALKNVIKDGNKGSRRYGVIECDPLVRKGLEK 420

Query: 871  TARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFE 930
            TA+HMVIPYMPMLVPP NWTGYD+GA+LFLPSYVMR HGAKQQRE VKR P+KQLEPVFE
Sbjct: 421  TAKHMVIPYMPMLVPPQNWTGYDQGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPVFE 480

Query: 931  ALDTLGRTKWR---------------------------VPLPEEPTVEDEAEIRKWKWKL 990
            ALDTLG TKWR                           VPLPEEP  EDE EIRKWKWK+
Sbjct: 481  ALDTLGNTKWRINRRILGVVDRLWANGGRLADLVDREDVPLPEEPDTEDETEIRKWKWKV 540

Query: 991  KAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMC 1050
            KA KKEN+ERHSQRCD+ELKLAVARKMK+E GFYYPHNLDFRGRAYPMHP+LNHLGSD+C
Sbjct: 541  KAVKKENNERHSQRCDVELKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 600

Query: 1051 RGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLE 1110
            RG+LEFAEGRPLG+SGLRWLKIHLANLYAGGVDKLSY+ R+ FTE+HLD+IFDSADRPLE
Sbjct: 601  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRVEFTESHLDDIFDSADRPLE 660

Query: 1111 GNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLS 1170
            G RWWL AEDPFQCLA CINLSEALRS  PE T+SHMPVHQDGSCNGLQHYAALGRDKL 
Sbjct: 661  GKRWWLSAEDPFQCLAACINLSEALRSSIPEATISHMPVHQDGSCNGLQHYAALGRDKLG 720

Query: 1171 L--------NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTV 1230
                     + PA    G+ A VLDI++ DA++DPATNPNALHARLLINQVDRKLVKQTV
Sbjct: 721  AAAVNLVAGDKPADVYSGIAARVLDIMKRDAQEDPATNPNALHARLLINQVDRKLVKQTV 780

Query: 1231 MTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAA-------------------- 1290
            MTSVYGVTY+GARDQIK+RLKER +IADD+QLF ASCYAA                    
Sbjct: 781  MTSVYGVTYVGARDQIKRRLKERGAIADDTQLFVASCYAARTTLTALGEMFQAARSIMGW 840

Query: 1291 -----RVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKT 1334
                 +VIASENQPVRW TPLGLPVVQPYRQLGRHLIKTSLQVL LQRETDKVM  RQ+T
Sbjct: 841  LGECAKVIASENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVKRQRT 900

BLAST of Cp4.1LG09g02310 vs. TrEMBL
Match: A0A0D2T7T6_GOSRA (DNA-directed RNA polymerase OS=Gossypium raimondii GN=B456_008G174700 PE=3 SV=1)

HSP 1 Score: 1201.4 bits (3107), Expect = 0.0e+00
Identity = 626/967 (64.74%), Postives = 721/967 (74.56%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRKVIEDSIS-------------VEEIRSSRTLGSLKSCCLLE 510
            MWR+++K+A+    + F  +    S+S             + + R S+ +    S C + 
Sbjct: 1    MWRSLLKQASHTHKSKFVPESCTSSLSSSSSTGFCQTSAFINKFRPSKAINHGFSGCPIL 60

Query: 511  GSRGISFFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAIS-EEDLSGSEEIQ 570
            G R    F S++    +  F+HS  P+ F G   + KGYA+AAEA +S E+DLSGSEEI 
Sbjct: 61   GFRENYVFPSQKDCLGRFGFSHSGNPLTFSGKFWNFKGYASAAEAIVSNEDDLSGSEEIN 120

Query: 571  ELMEELSKQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDM 630
            EL+E + K+++ ES  KQPK MV GM V KYN L++RQIK+ETEAWEEAA+EYQEL+ DM
Sbjct: 121  ELVEAMIKEERKESFSKQPKIMVGGMGVAKYNTLKRRQIKIETEAWEEAAKEYQELIADM 180

Query: 631  CEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVKR 690
            C+QKLAPNLPY+KSLFLGWFEPLRD+IAA+QE  KG   F  S+    +       AV  
Sbjct: 181  CQQKLAPNLPYVKSLFLGWFEPLRDSIAAEQEVCKGN--FKISHAAYFNELSADMMAVVT 240

Query: 691  VPKKQLEPVFEALDTLGRTKWRVNKRVLSIIDRI--------WASGGRLADLVDRXTEGD 750
            + K          +T G    RV +    I + I        +    +  +  D+ +  +
Sbjct: 241  MHKLM---GLLMTNTAGTGGIRVVQAACQIGEAIENEARIQKFLEKTKKKNTTDKKSVTE 300

Query: 751  TEPVVEDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLI 810
            +EP   +Q K+AK ++KLRKKVT LMKKQK+ QVR IVK  D  KPWGQ+AHVKVGCRLI
Sbjct: 301  SEPETTEQGKLAKNEEKLRKKVTQLMKKQKVHQVREIVKGRDTSKPWGQEAHVKVGCRLI 360

Query: 811  QLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEK 870
            QLL+E AYIQPP+DQ+G GPPDIRPAFVH LK + K+  K SRRYGVIECDPLVR+GLEK
Sbjct: 361  QLLMENAYIQPPVDQIGDGPPDIRPAFVHALKNVIKDGNKGSRRYGVIECDPLVRKGLEK 420

Query: 871  TARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFE 930
            TA+HMVIPYMPMLVPP NWTGYD+GA+LFLPSYVMR HGAKQQRE VKR P+KQLEPVFE
Sbjct: 421  TAKHMVIPYMPMLVPPQNWTGYDQGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPVFE 480

Query: 931  ALDTLGRTKWR---------------------------VPLPEEPTVEDEAEIRKWKWKL 990
            ALDTLG TKWR                           VPLPEEP  EDE EIRKWKWK+
Sbjct: 481  ALDTLGNTKWRINRRILGVVDRLWANGGRLADLVDREDVPLPEEPDTEDETEIRKWKWKV 540

Query: 991  KAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMC 1050
            KA KKEN+ERHSQRCD+ELKLAVARKMK+E GFYYPHNLDFRGRAYPMHP+LNHLGSD+C
Sbjct: 541  KAVKKENNERHSQRCDVELKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 600

Query: 1051 RGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLE 1110
            RG+LEFAEGRPLG+SGLRWLKIHLANLYAGGVDKLSY+ R+ FTE+HLD+IFDSADRPLE
Sbjct: 601  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRVEFTESHLDDIFDSADRPLE 660

Query: 1111 GNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLS 1170
            G RWWL AEDPFQCLA CINLSEALRS  PE T+SHMPVHQDGSCNGLQHYAALGRDKL 
Sbjct: 661  GKRWWLSAEDPFQCLAACINLSEALRSSIPEATISHMPVHQDGSCNGLQHYAALGRDKLG 720

Query: 1171 L--------NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTV 1230
                     + PA    G+ A VLDI++ DA++DPATNPNALHARLLINQVDRKLVKQTV
Sbjct: 721  AAAVNLVAGDKPADVYSGIAARVLDIMKRDAQEDPATNPNALHARLLINQVDRKLVKQTV 780

Query: 1231 MTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAA-------------------- 1290
            MTSVYGVTY+GARDQIK+RLKER +IADD+QLF ASCYAA                    
Sbjct: 781  MTSVYGVTYVGARDQIKRRLKERGAIADDTQLFVASCYAARTTLTALGEMFQAARSIMGW 840

Query: 1291 -----RVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKT 1332
                 +VIASENQPVRW TPLGLPVVQPYRQLGRHLIKTSLQVL LQRETDKVM  RQ+T
Sbjct: 841  LGECAKVIASENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVKRQRT 900

BLAST of Cp4.1LG09g02310 vs. TrEMBL
Match: B9HIV5_POPTR (DNA-directed RNA polymerase OS=Populus trichocarpa GN=POPTR_0008s11200g PE=3 SV=2)

HSP 1 Score: 1183.7 bits (3061), Expect = 0.0e+00
Identity = 629/976 (64.45%), Postives = 722/976 (73.98%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRK--VIEDSISVEEIRSSRTLGSLKSCCLLEGSRGISFFHSR 510
            MWR + K + S++  F S      +DS  +E IRS      L S      SR I  F   
Sbjct: 1    MWRTLAKCSPSKQLKFPSNSSNFFKDSTFIENIRSPDAKKCLNSAFSFLCSRQIGVFPQN 60

Query: 511  EVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAI----SEEDLSGSEEIQELMEELSK 570
            +     S+F   ++P          KGYATAA A +     E DLSGS++ Q LME+++K
Sbjct: 61   DK-LCNSSFGDLTKPFDLSPFF--FKGYATAAAADVIPSNDESDLSGSDDFQGLMEQVNK 120

Query: 571  Q-DKVESHFK-QPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLA 630
               K+E  F+ Q KKMV GM +GKY IL++RQIKMETEAWE+AA+EYQE+L DMCEQKLA
Sbjct: 121  HFQKMEPQFRPQEKKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLA 180

Query: 631  PNLPYIKSLFLGWFEPLRDAIAADQEYDKG-------AHLF-LPSYVMRI---------- 690
            PNLPY+KSLFLGWFEPLRDAI A+QE  K        AH   LP+ +M +          
Sbjct: 181  PNLPYVKSLFLGWFEPLRDAIVAEQELCKRNLRVSHRAHFSDLPADMMAVITMHKLMGLL 240

Query: 691  ---HGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRVNKRVLSIIDRIWASGGRLADLV 750
               +G       V+         V EA++  GR            I +      +  ++ 
Sbjct: 241  MTGNGGSASIRVVQAA-----SVVGEAIEHEGR------------IHKFLEKTKKRKNVE 300

Query: 751  DRXTEGDTEPVVEDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHV 810
             + +EG+++  +E+ EK++KEQ+KLRKKVT L+KKQK++QVR IVK HD  +PWGQ+ HV
Sbjct: 301  AKISEGESDAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHV 360

Query: 811  KVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPL 870
            KVG RLIQL+IETAYIQPP+DQ+G GPPDIRPAFVHTLKTITK+ QK+SRRYGVIECDPL
Sbjct: 361  KVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPL 420

Query: 871  VRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKK 930
            VR+GLEK+ARHMVIPYMPMLVPPLNWTGYD+GAHLFLPSYVMRIHG+KQQR+AVKR  + 
Sbjct: 421  VRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRN 480

Query: 931  QLEPVFEALDTLGRTKWRV---------------------------PLPEEPTVEDEAEI 990
            QLEPVF+ALDTLG TKWR+                           PLPEEP  EDEAEI
Sbjct: 481  QLEPVFKALDTLGNTKWRINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEI 540

Query: 991  RKWKWKLKAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLN 1050
            RKW WK+++ KKENSERHSQRCDIELKLAVARKMK+EEGFYYPHNLDFRGRAYPMHP+LN
Sbjct: 541  RKWTWKVRSVKKENSERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLN 600

Query: 1051 HLGSDMCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFD 1110
            HLGSD+CRGILEFAEGRPLG+SGLRWLKIHLANLYAGGVDKLSY  RISFTENHLD+IFD
Sbjct: 601  HLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFD 660

Query: 1111 SADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAA 1170
            SAD+PLEG RWWLGAEDPFQCLA CINLSEALRSPSPET  SH PVHQDGSCNGLQHYAA
Sbjct: 661  SADQPLEGRRWWLGAEDPFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAA 720

Query: 1171 LGRDKLSL--------NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDR 1230
            LGRDKL            PA    G+   VLDI++ DAEKDPA NPN++HA+LL+NQVDR
Sbjct: 721  LGRDKLGAAAVNLVGGEKPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQVDR 780

Query: 1231 KLVKQTVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAA------------- 1290
            KLVKQTVMTSVYGVTY+GARDQIK+RLKER  IADD QL++A+CYAA             
Sbjct: 781  KLVKQTVMTSVYGVTYIGARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEG 840

Query: 1291 ------------RVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKV 1334
                        +VIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVL L+RETDKV
Sbjct: 841  ARGIMAWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKV 900

BLAST of Cp4.1LG09g02310 vs. TAIR10
Match: AT5G15700.2 (AT5G15700.2 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 1009.6 bits (2609), Expect = 1.9e-294
Identity = 546/964 (56.64%), Postives = 655/964 (67.95%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRK------VIEDSISVEEIRSSRTLGSLKSCCLLEGSRGISF 510
            MWRNI K+A SR     +        ++    S+     S     L S C  +G R +S 
Sbjct: 40   MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLGSPCHGKGFRCLSG 99

Query: 511  FHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELSK 570
               RE  F+KS    S       G L  A+GY + AE  +   D+    E+ EL++E+ K
Sbjct: 100  ITRREE-FSKSERCLS-------GTL--ARGYTSVAEEEVLSTDVEEEPEVDELLKEMKK 159

Query: 571  QDKVESHFKQPKKMVD--GMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLA 630
            + K ESH     K  D  GM   K+  L +RQ+K+ETE WE AA EY ELLTDMCEQKLA
Sbjct: 160  EKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLA 219

Query: 631  PNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQ-REAVKRVPKKQ 690
            PNLPY+KSLFLGWFEPLRDAIA DQE            + R+  +K      + ++P  +
Sbjct: 220  PNLPYVKSLFLGWFEPLRDAIAKDQE------------LYRLGKSKATYAHYLDQLPADK 279

Query: 691  LEPVFEALDTLGRTKWRVNKRVLSIIDRIWASGG------RLADLVDRXTEGDT--EPVV 750
            +  V      +G      +   + ++      G       R+   +D+  +GD   E   
Sbjct: 280  IS-VITMHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGG 339

Query: 751  EDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIE 810
             + E   KEQDKLRKKV  L+KKQKL  VR I++ HD+ KPW  D   KVG RLI+LL+ 
Sbjct: 340  VENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVR 399

Query: 811  TAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHM 870
            TAYIQ P DQ     PD+RPAFVHT K + K +  + R+YGVIECDPLVR+GLEK+ R+ 
Sbjct: 400  TAYIQSPADQQDNDLPDVRPAFVHTFK-VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYA 459

Query: 871  VIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTL 930
            V+PYMPMLVPPL W+GYDKGA+LFL SY+M+ HGAKQQREA+K  PK QL+PVFEALDTL
Sbjct: 460  VMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTL 519

Query: 931  GRTKWRV---------------------------PLPEEPTVEDEAEIRKWKWKLKAAKK 990
            G TKWRV                           PLPE+P  EDE  ++KWKW++K+AKK
Sbjct: 520  GSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKK 579

Query: 991  ENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILE 1050
             NSERHSQRCD ELKL+VARKMK+EE FYYPHN+DFRGRAYPM PHLNHLGSD+CRG+LE
Sbjct: 580  VNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLE 639

Query: 1051 FAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWW 1110
            FAEGRP+G SGLRWLKIHLANLYAGGVDKLS   R++FTENHLD+IFDSADRPLEG+RWW
Sbjct: 640  FAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWW 699

Query: 1111 LGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSLN--- 1170
            L AEDPFQCLAVCI+L+EALRSPSPET LSH+P+HQDGSCNGLQHYAALGRD L      
Sbjct: 700  LQAEDPFQCLAVCISLTEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVN 759

Query: 1171 -----NPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVY 1230
                  PA    G+   VLDI+R DA++DP   P AL AR L+NQVDRKLVKQTVMTSVY
Sbjct: 760  LVAGEKPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVY 819

Query: 1231 GVTYMGARDQIKKRLKERASIADDSQLFAASCYAARV----------------------- 1290
            GVTY+GARDQIK+RLKER+   D+ ++F A+CYAA+V                       
Sbjct: 820  GVTYIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECA 879

Query: 1291 --IASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPN 1334
              IASEN+ VRWTTPLGLPVVQPY Q+G  L+KTSLQ L+LQ ETD+V+  RQ+TAFPPN
Sbjct: 880  KIIASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPN 939

BLAST of Cp4.1LG09g02310 vs. TAIR10
Match: AT1G68990.2 (AT1G68990.2 male gametophyte defective 3)

HSP 1 Score: 914.8 bits (2363), Expect = 6.5e-266
Identity = 453/677 (66.91%), Postives = 524/677 (77.40%), Query Frame = 1

Query: 728  DTEPVVEDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRL 787
            +TE     +E VAKE +K RK+VT LM+K KLRQV+ +V++HD  KPWGQ+A VKVG RL
Sbjct: 275  NTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARL 334

Query: 788  IQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLE 847
            IQLL+E AYIQPP +Q   GPPDIRPAF    +T+T E  KTSRRYG IECDPLV +GL+
Sbjct: 335  IQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLD 394

Query: 848  KT-------ARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPK 907
            K+       ARHMVIPY+PML+PP NWTGYD+GAH FLPSYVMR HGAKQQR  +KR PK
Sbjct: 395  KSVSRIVDYARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPK 454

Query: 908  KQLEPVFEALDTLGRTKWR---------------------------VPLPEEPTVEDEAE 967
            +QLEPV+EALDTLG TKW+                           VP+PEEP  ED+ +
Sbjct: 455  EQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEK 514

Query: 968  IRKWKWKLKAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHL 1027
             + W+W+ K A K+N+ERHSQRCDIELKL VARKMK+EEGFYYPHN+DFRGRAYP+HP+L
Sbjct: 515  FKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYL 574

Query: 1028 NHLGSDMCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIF 1087
            NHLGSD+CRGILEF EG+PLG+SGLRWLKIH+ANLYAGGVDKL+Y+DRI+FTE+HL++IF
Sbjct: 575  NHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIF 634

Query: 1088 DSADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYA 1147
            DS+DRPLEG RWWL AEDPFQCLA CINLSEALRSP PE  +SH+P+HQDGSCNGLQHYA
Sbjct: 635  DSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYA 694

Query: 1148 ALGRDKLSLN--------NPAGV----NAIVLDIIRSDAEKDPATNPNALHARLLINQVD 1207
            ALGRDKL  +         PA V     A VL I++ DAE+DP T PNA +A+L+++QVD
Sbjct: 695  ALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLDQVD 754

Query: 1208 RKLVKQTVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYA------------- 1267
            RKLVKQTVMTSVYGVTY GARDQIKKRLKER +  DDS  F ASCYA             
Sbjct: 755  RKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFE 814

Query: 1268 ------------ARVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDK 1327
                        A++IASEN  V WTTPLGLPVVQPYR+ GRHL+KT+LQVL L RETDK
Sbjct: 815  AARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDK 874

Query: 1328 VMATRQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDVMNRLLRE 1334
            VMA RQ TAF PNF+HSLDGSHMMMTAVAC RAGL+FAGVHDS+WTHACDVDVMN +LRE
Sbjct: 875  VMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILRE 934

BLAST of Cp4.1LG09g02310 vs. TAIR10
Match: AT2G24120.1 (AT2G24120.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 835.9 bits (2158), Expect = 3.8e-242
Identity = 445/851 (52.29%), Postives = 570/851 (66.98%), Query Frame = 1

Query: 559  MEELSKQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCE 618
            ++ LSK   V+   K  +K +D     K++ LR+RQ+K ETEAWE    EY++L  +MCE
Sbjct: 136  LKGLSKM--VDQTLKIERKDIDKR---KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 195

Query: 619  QKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDK----------GAHL-FLPSYVMRIHGA 678
            + LAPNLPY+K +FLGWF+PL+D I  +Q+  K            H+  LP+  M +   
Sbjct: 196  KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 255

Query: 679  KQQREAVKRVPKKQLEPVFEALDTLGRTKWRVNKRVLSIIDRIWASGGRLADLVDRXTEG 738
             +    V    +     V +A  ++G          ++I   +     R+ + + R  + 
Sbjct: 256  HKMMGLVMSGHEDGCIQVVQAAVSIG----------IAIEQEV-----RIHNFLKRTRKN 315

Query: 739  DTEPVVEDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRL 798
            +      D ++  KE+  LRK+V +L++++++     +VK  +  KPWG+    K+G RL
Sbjct: 316  N----AGDSQEELKEKQLLRKRVNSLIRRKRIIDALKVVKS-EGTKPWGRATQAKLGSRL 375

Query: 799  IQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITK-EAQKTSRRYGVIECDPLVRRGL 858
            ++LLIE AY+QPP+ Q G   P+ RPAF H  KT+TK    K  RRYGVIECD L+  GL
Sbjct: 376  LELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGL 435

Query: 859  EKTARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPV 918
            +K+A+HM+IPY+PMLVPP  W GYDKG +LFLPSY+MR HG+K+Q++A+K +  K    V
Sbjct: 436  DKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRV 495

Query: 919  FEALDTLGRTKWRVP--------------------LPEEPTVEDEAEIRKWKWKLKAAKK 978
            FEALDTLG TKWRV                     +  E     E    +   +L++ K 
Sbjct: 496  FEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKW 555

Query: 979  E-------NSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSD 1038
                    N ERHS RCD+ELKL+VARKMK+EEGFYYPHNLDFRGRAYPMHPHLNHL SD
Sbjct: 556  SARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 615

Query: 1039 MCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRP 1098
            +CRG LEFAEGRPLG+SGL WLKIHLANLYAGGV+KLS+  R++F ENHLD+I DSA+ P
Sbjct: 616  LCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENP 675

Query: 1099 LEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDK 1158
            + G RWWL AEDPFQCLA C+ L++AL+SPSP + +SH+P+HQDGSCNGLQHYAALGRD 
Sbjct: 676  IHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDS 735

Query: 1159 L---SLNNPAG---------VNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQ 1218
                ++N  AG         ++  V +I++ D+ KDP +NP A  A++LI QVDRKLVKQ
Sbjct: 736  FEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQ 795

Query: 1219 TVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAARV---------------- 1278
            TVMTSVYGVTY+GAR+QIK+RL+E+  I D+  LFAA+CY+A+V                
Sbjct: 796  TVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIM 855

Query: 1279 ---------IASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQ 1334
                     IAS+N PVRW TPLGLPVVQPY +  RHLI+TSLQVLALQRE + V   +Q
Sbjct: 856  SWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQ 915

BLAST of Cp4.1LG09g02310 vs. NCBI nr
Match: gi|659091310|ref|XP_008446483.1| (PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 1268.1 bits (3280), Expect = 0.0e+00
Identity = 656/954 (68.76%), Postives = 748/954 (78.41%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFS-------RKVIEDSISVEEIRSSRTLGSLKSCCLLEGSRGIS 510
            MWRN++KRAASR+ T FS       RKV ED I +++IR SR+L +L +CC    S  IS
Sbjct: 1    MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 511  FFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELS 570
            F H ++VGF  SNF HSS PVAFYGVLNHA+GYATAAEAAISE DLSGSEEIQE+ME +S
Sbjct: 61   FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 571  KQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAP 630
            KQDKVE HFK+PK+MVD      Y++LRKRQIK+ETEAWEEAAREYQEL+ ++CEQKL+P
Sbjct: 121  KQDKVEPHFKKPKRMVDRKGEATYDMLRKRQIKIETEAWEEAAREYQELIAEICEQKLSP 180

Query: 631  NLPYIKSLFLGWFEPLRDAIAADQEYDKG-AHLFLPSYVMRIHGAKQQREAVKRVPKKQL 690
            NLPY+KSLFLGWF+P RDAI A+QE  K  +  F PS+    +       AV  +   +L
Sbjct: 181  NLPYMKSLFLGWFQPFRDAIVAEQESIKSKSKNFCPSHAPYFNLLPADMMAV--ITMHKL 240

Query: 691  EPVFEALDTLGRTKWRVNKRVLSIIDRIWASGGRLADLVDRXTEGDTEPVVEDQEKVAKE 750
              V  + D  G    +V +    I + I  +  R+    ++  +          EK+A++
Sbjct: 241  VGVMMS-DFEGNGIVKVTQAATHIGEAI-ENEVRIRHFFEKKKQ---------PEKLAED 300

Query: 751  QDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIETAYIQPPMD 810
            QDKLRKKVT LMK+QKL++V  IVK+HD LKPWG D HVKVGC LI+ LIETAYIQPP+D
Sbjct: 301  QDKLRKKVTKLMKQQKLQKVNFIVKKHDDLKPWGTDVHVKVGCTLIKFLIETAYIQPPVD 360

Query: 811  QLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLV 870
            QLG  PPD+RPAFVH LKT  KE QK  RRYGVIECDPLVRRG+ KTA HMVIPYMPMLV
Sbjct: 361  QLGDAPPDLRPAFVHYLKTSPKETQKLGRRYGVIECDPLVRRGMVKTAGHMVIPYMPMLV 420

Query: 871  PPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRV-- 930
            PPLNWTGYDKGA+ FLPSYVMRI GAKQQREAV+R P+ QLEPVF+ALD LG TKWRV  
Sbjct: 421  PPLNWTGYDKGAYFFLPSYVMRIRGAKQQREAVRRAPRTQLEPVFKALDILGSTKWRVNK 480

Query: 931  -------------------------PLPEEPTVEDEAEIRKWKWKLKAAKKENSERHSQR 990
                                     PLPEEP+VEDEAEIRKWKWK+KA KKENSERHSQR
Sbjct: 481  RVLSIIERIWASGGRLADLVDREDLPLPEEPSVEDEAEIRKWKWKVKAVKKENSERHSQR 540

Query: 991  CDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGE 1050
            CD+ELKLAVARKMK+EEGFYYPHNLDFRGRAYPMHP+LNH+GSD+CRGILEFAEGRPLGE
Sbjct: 541  CDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPNLNHIGSDLCRGILEFAEGRPLGE 600

Query: 1051 SGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPFQC 1110
            SGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEG+RWWLGAEDPFQC
Sbjct: 601  SGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGSRWWLGAEDPFQC 660

Query: 1111 LAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL--------NNPA- 1170
            LAVCINLSEALRSPSPETT+SH+P+HQDGSCNGLQHYAALGRDKL          + PA 
Sbjct: 661  LAVCINLSEALRSPSPETTISHLPIHQDGSCNGLQHYAALGRDKLGAEAVNLAAGDKPAD 720

Query: 1171 ---GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGARD 1230
               G+ + VLDIIRSDA KDPA+ PNALHA+LLINQVDRKLVKQTVMTSVYGVT +GA+D
Sbjct: 721  VYSGIASRVLDIIRSDALKDPASYPNALHAKLLINQVDRKLVKQTVMTSVYGVTLVGAKD 780

Query: 1231 QIKKRLKERASIADDSQLFAASCYA-------------------------ARVIASENQP 1290
            QI +RLKERASI ++ QLF+ASCYA                         A+VIASEN+ 
Sbjct: 781  QISQRLKERASIGNERQLFSASCYAAKTTLTAIGEMFEEAKSIMNWLGECAKVIASENKD 840

Query: 1291 VRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPNFVHSLDGSH 1333
            VRWTTPLGLPVVQPYR+ GRH++KTSLQVL+LQRETDKVMA RQK+AFPPNF+HSLD SH
Sbjct: 841  VRWTTPLGLPVVQPYRKPGRHIVKTSLQVLSLQRETDKVMAARQKSAFPPNFIHSLDSSH 900

BLAST of Cp4.1LG09g02310 vs. NCBI nr
Match: gi|659091308|ref|XP_008446482.1| (PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 1263.1 bits (3267), Expect = 0.0e+00
Identity = 656/956 (68.62%), Postives = 748/956 (78.24%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFS-------RKVIEDSISVEEIRSSRTLGSLKSCCLLEGSRGIS 510
            MWRN++KRAASR+ T FS       RKV ED I +++IR SR+L +L +CC    S  IS
Sbjct: 1    MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 511  FFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELS 570
            F H ++VGF  SNF HSS PVAFYGVLNHA+GYATAAEAAISE DLSGSEEIQE+ME +S
Sbjct: 61   FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 571  KQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAP 630
            KQDKVE HFK+PK+MVD      Y++LRKRQIK+ETEAWEEAAREYQEL+ ++CEQKL+P
Sbjct: 121  KQDKVEPHFKKPKRMVDRKGEATYDMLRKRQIKIETEAWEEAAREYQELIAEICEQKLSP 180

Query: 631  NLPYIKSLFLGWFEPLRDAIAADQEYDKG-AHLFLPSYVMRIHGAKQQREAVKRVPKKQL 690
            NLPY+KSLFLGWF+P RDAI A+QE  K  +  F PS+    +       AV  +   +L
Sbjct: 181  NLPYMKSLFLGWFQPFRDAIVAEQESIKSKSKNFCPSHAPYFNLLPADMMAV--ITMHKL 240

Query: 691  EPVFEALDTLGRTKWRVNKRVLSIIDRIWASGGRLADLVDRXTEGDTEPVVEDQEKVAKE 750
              V  + D  G    +V +    I + I  +  R+    ++  +          EK+A++
Sbjct: 241  VGVMMS-DFEGNGIVKVTQAATHIGEAI-ENEVRIRHFFEKKKQ---------PEKLAED 300

Query: 751  QDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIETAYIQPPMD 810
            QDKLRKKVT LMK+QKL++V  IVK+HD LKPWG D HVKVGC LI+ LIETAYIQPP+D
Sbjct: 301  QDKLRKKVTKLMKQQKLQKVNFIVKKHDDLKPWGTDVHVKVGCTLIKFLIETAYIQPPVD 360

Query: 811  QLGGGPPDIRPAFVHTLKTITKEAQ--KTSRRYGVIECDPLVRRGLEKTARHMVIPYMPM 870
            QLG  PPD+RPAFVH LKT  KE Q  K  RRYGVIECDPLVRRG+ KTA HMVIPYMPM
Sbjct: 361  QLGDAPPDLRPAFVHYLKTSPKETQLTKLGRRYGVIECDPLVRRGMVKTAGHMVIPYMPM 420

Query: 871  LVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRV 930
            LVPPLNWTGYDKGA+ FLPSYVMRI GAKQQREAV+R P+ QLEPVF+ALD LG TKWRV
Sbjct: 421  LVPPLNWTGYDKGAYFFLPSYVMRIRGAKQQREAVRRAPRTQLEPVFKALDILGSTKWRV 480

Query: 931  ---------------------------PLPEEPTVEDEAEIRKWKWKLKAAKKENSERHS 990
                                       PLPEEP+VEDEAEIRKWKWK+KA KKENSERHS
Sbjct: 481  NKRVLSIIERIWASGGRLADLVDREDLPLPEEPSVEDEAEIRKWKWKVKAVKKENSERHS 540

Query: 991  QRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPL 1050
            QRCD+ELKLAVARKMK+EEGFYYPHNLDFRGRAYPMHP+LNH+GSD+CRGILEFAEGRPL
Sbjct: 541  QRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPNLNHIGSDLCRGILEFAEGRPL 600

Query: 1051 GESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPF 1110
            GESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEG+RWWLGAEDPF
Sbjct: 601  GESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGSRWWLGAEDPF 660

Query: 1111 QCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL--------NNP 1170
            QCLAVCINLSEALRSPSPETT+SH+P+HQDGSCNGLQHYAALGRDKL          + P
Sbjct: 661  QCLAVCINLSEALRSPSPETTISHLPIHQDGSCNGLQHYAALGRDKLGAEAVNLAAGDKP 720

Query: 1171 A----GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGA 1230
            A    G+ + VLDIIRSDA KDPA+ PNALHA+LLINQVDRKLVKQTVMTSVYGVT +GA
Sbjct: 721  ADVYSGIASRVLDIIRSDALKDPASYPNALHAKLLINQVDRKLVKQTVMTSVYGVTLVGA 780

Query: 1231 RDQIKKRLKERASIADDSQLFAASCYA-------------------------ARVIASEN 1290
            +DQI +RLKERASI ++ QLF+ASCYA                         A+VIASEN
Sbjct: 781  KDQISQRLKERASIGNERQLFSASCYAAKTTLTAIGEMFEEAKSIMNWLGECAKVIASEN 840

Query: 1291 QPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPNFVHSLDG 1333
            + VRWTTPLGLPVVQPYR+ GRH++KTSLQVL+LQRETDKVMA RQK+AFPPNF+HSLD 
Sbjct: 841  KDVRWTTPLGLPVVQPYRKPGRHIVKTSLQVLSLQRETDKVMAARQKSAFPPNFIHSLDS 900

BLAST of Cp4.1LG09g02310 vs. NCBI nr
Match: gi|778705699|ref|XP_004135424.2| (PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Cucumis sativus])

HSP 1 Score: 1254.2 bits (3244), Expect = 0.0e+00
Identity = 651/953 (68.31%), Postives = 738/953 (77.44%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFS-------RKVIEDSISVEEIRSSRTLGSLKSCCLLEGSRGIS 510
            MWRN+ K AASR+   FS       RKV ED I +++IRSSR+L +L +CC   GS  I 
Sbjct: 1    MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60

Query: 511  FFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELS 570
            F H ++VGF  SNF HSS PV FYGVL HAKGYATAAEAAI E DLSGSEEIQE+ME L+
Sbjct: 61   FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120

Query: 571  KQDKVESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAP 630
            KQDKVE HFKQPK MVDG R  KY++LRKRQIK+ETEAWEEAA+EYQ+L+ D+CEQKLAP
Sbjct: 121  KQDKVELHFKQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIADICEQKLAP 180

Query: 631  NLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLE 690
            NLPY+KSLFLGWF+PLRDAI A+QE  K      PS+ +  H       AV  +   +L 
Sbjct: 181  NLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSS-PSHALYFHLLPADMMAV--ITMHKLM 240

Query: 691  PVFEALDTLGRTKWRVNKRVLSIIDRIWASGGRLADLVDRXTEGDTEPVVEDQEKVAKEQ 750
             +  + D  G    RV +    I + I  +  R+ +  ++  +          E++A+  
Sbjct: 241  GLLMS-DIEGGGSVRVTQAASGIGEAI-ENEVRIRNFFEKTKK--------QPEQLAEGH 300

Query: 751  DKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQDAHVKVGCRLIQLLIETAYIQPPMDQ 810
            DKLRKK+T LMK+QKL++V  IVK HD  KPWG DAHVKVGCRLIQLLIETAYIQPP+DQ
Sbjct: 301  DKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWGTDAHVKVGCRLIQLLIETAYIQPPVDQ 360

Query: 811  LGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVP 870
            +G  PPD+RPAFVH+LKT  KE+Q+  +RYGVIECDPLV RG+ KTA HM+IPYMPMLVP
Sbjct: 361  IGDAPPDLRPAFVHSLKTSLKESQRLGKRYGVIECDPLVYRGMVKTAGHMIIPYMPMLVP 420

Query: 871  PLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRV--- 930
            P  WTGYD+GAH FLPSYVMRI GA+QQREAVKR  KKQL PVF+ALD LG TKWRV   
Sbjct: 421  PRKWTGYDQGAHFFLPSYVMRIRGARQQREAVKRASKKQLGPVFKALDILGSTKWRVNKR 480

Query: 931  ------------------------PLPEEPTVEDEAEIRKWKWKLKAAKKENSERHSQRC 990
                                    PLPE+P VEDEAEIR WKWK+KA K+ENSERHSQRC
Sbjct: 481  VLSVIEKIWASGGRLADLVDREDMPLPEQPMVEDEAEIRNWKWKVKAVKRENSERHSQRC 540

Query: 991  DIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGES 1050
            D ELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNH+GSD CRG LEFAEGRPLGES
Sbjct: 541  DTELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHIGSDFCRGTLEFAEGRPLGES 600

Query: 1051 GLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPFQCL 1110
            GLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEG+RWWLGAEDPFQCL
Sbjct: 601  GLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGSRWWLGAEDPFQCL 660

Query: 1111 AVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLSL--------NNPA-- 1170
            AVCI+LSEALRSPSPETT+SHMPVHQDGSCNGLQHYAALGRDKL          + PA  
Sbjct: 661  AVCIDLSEALRSPSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAEAVNLAAGDKPADV 720

Query: 1171 --GVNAIVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGARDQ 1230
              G+ + VLDI+RSDA KDPA+NPNALHARLLINQVDRKLVKQTVMTSVYGVTY GA+DQ
Sbjct: 721  YSGIASRVLDIMRSDAAKDPASNPNALHARLLINQVDRKLVKQTVMTSVYGVTYAGAKDQ 780

Query: 1231 IKKRLKERASIADDSQLFAASCYA-------------------------ARVIASENQPV 1290
            I++RLKER+SI ++  LF ASCYA                         A+VIASENQ V
Sbjct: 781  IRQRLKERSSIENERHLFTASCYAAKTTLTAIGEMFEAAKSIMNWLGECAKVIASENQAV 840

Query: 1291 RWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRETDKVMATRQKTAFPPNFVHSLDGSHM 1333
            RWTTPLGLPVVQPYR+LGRHL+KTSLQ+L+LQRETDKVMA RQ+TAFPPN++HSLD SHM
Sbjct: 841  RWTTPLGLPVVQPYRKLGRHLVKTSLQMLSLQRETDKVMAMRQRTAFPPNYIHSLDSSHM 900

BLAST of Cp4.1LG09g02310 vs. NCBI nr
Match: gi|596284970|ref|XP_007225383.1| (hypothetical protein PRUPE_ppa000780mg [Prunus persica])

HSP 1 Score: 1226.5 bits (3172), Expect = 0.0e+00
Identity = 641/979 (65.47%), Postives = 738/979 (75.38%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRKVI-----------EDSISVEEIRSSRTLGSLKSCCLLEGS 510
            MWRN+ K+ ASR+    S+              ++S  +++ R       + +  L+ G 
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 511  RGISFFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAIS---EEDLSGSEEIQ 570
            R +    S++    + +  + S P    G  N+AKGYA+ AEA  S   EED SGSEEIQ
Sbjct: 61   RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120

Query: 571  ELMEELSKQDK-VESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTD 630
            E++E+L +++  VESHFKQPK++V GM VGKYN+LRKRQIK+ETEAW+EAA+EYQELL D
Sbjct: 121  EMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLAD 180

Query: 631  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVK 690
            MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQ+  K  +        + H          
Sbjct: 181  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNS------RQSHAPYFDHLPAD 240

Query: 691  RVPKKQLEPVFEALDTL--GRTKWRVNKRVLSI---------IDRIWASGGRLADLVDRX 750
            ++    +  +   L T   G    RV +   +I         I R      +  + +D+ 
Sbjct: 241  KMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKK 300

Query: 751  TEGDTEPVV-------EDQEKVAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQ 810
             E D+ PV        ++QEK+ KEQ++LRKKV  L+K+QK++QVR IVKE + LKPWGQ
Sbjct: 301  AEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQ 360

Query: 811  DAHVKVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIE 870
            +AHVKVGCRLIQLL++TAYIQPP+DQ+G GPPDIRPAFVH LKTIT++ QKTSRRYGVIE
Sbjct: 361  EAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIE 420

Query: 871  CDPLVRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKR 930
            CDP+VR+G+EKTARHMV+PYMPMLVPP+NWTGYD+GA+LFLPSYVMR HGAKQQRE VKR
Sbjct: 421  CDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKR 480

Query: 931  VPKKQLEPVFEALDTLGRTKWRV---------------------------PLPEEPTVED 990
             P+KQLEPVFEALDTLG TKWRV                           PLPEEP  ED
Sbjct: 481  TPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTED 540

Query: 991  EAEIRKWKWKLKAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMH 1050
            EAEIRKWKWKLKAAKKENSERHSQRCDIELKLA +RKMK+EEGFYYPHNLDFRGRAYPMH
Sbjct: 541  EAEIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMH 600

Query: 1051 PHLNHLGSDMCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLD 1110
            P+LNHLGSDMCRGILEF+EGR LG+SGLRWLKIHLANLYAGGVDKLS+ DR +FTENH+D
Sbjct: 601  PYLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVD 660

Query: 1111 EIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQ 1170
            EIFDSADRPLEG RWWLGAEDPFQCLA CINL EALRSPSPETT+S+MPVHQDGSCNGLQ
Sbjct: 661  EIFDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQ 720

Query: 1171 HYAALGRDKLSL--------NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLIN 1230
            HYAALGRDKL          + PA    G+ A VLDI+R+DAEKDPATNPNALHARLLIN
Sbjct: 721  HYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLIN 780

Query: 1231 QVDRKLVKQTVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAA--------- 1290
            QVDRKLVKQTVMTSVYGVTY+GARDQIK+RLKER SIADD+ LFAA+CYAA         
Sbjct: 781  QVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGE 840

Query: 1291 ----------------RVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRE 1333
                            +VIASENQPVRW TPLGLPVVQPYRQLGRHLIKTSLQVL LQRE
Sbjct: 841  MFEAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRE 900

BLAST of Cp4.1LG09g02310 vs. NCBI nr
Match: gi|645277464|ref|XP_008243783.1| (PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Prunus mume])

HSP 1 Score: 1221.8 bits (3160), Expect = 0.0e+00
Identity = 642/979 (65.58%), Postives = 733/979 (74.87%), Query Frame = 1

Query: 451  MWRNIVKRAASRRDTFFSRKVIEDSISVEEIRSSRTL-----------GSLKSCCLLEGS 510
            MWRN+ K+ ASR+    S+       S   I S  +              + +  L+ G 
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFSSPSSTSMIFSQESSFLEKAWHFEARKCINNRILVMGF 60

Query: 511  RGISFFHSREVGFAKSNFAHSSEPVAFYGVLNHAKGYATAAEAAIS---EEDLSGSEEIQ 570
            R +    S++    + +  + S P    G  N+AKGYA+ AEA  S   EED SGSEEIQ
Sbjct: 61   RQVGDMASQKDELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120

Query: 571  ELMEELSKQDK-VESHFKQPKKMVDGMRVGKYNILRKRQIKMETEAWEEAAREYQELLTD 630
            E++E+L +++  VESHFKQPK++V GM VGKYN+LRKRQIK+ETEAW+EAA+EYQELL D
Sbjct: 121  EMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLAD 180

Query: 631  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEYDKGAHLFLPSYVMRIHGAKQQREAVK 690
            MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQ+  K  +        + H          
Sbjct: 181  MCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQTNS------RQSHAPYFDHLPAD 240

Query: 691  RVPKKQLEPVFEALDTL--GRTKWRVNKRVLSI---------IDRIWASGGRLADLVDRX 750
            ++    +  +   L T   G    RV +   +I         I R      +  +  D+ 
Sbjct: 241  KMAVITMHKLMGLLMTNNGGVGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTTDKK 300

Query: 751  TEGDTEPVVEDQEKVAKEQ-------DKLRKKVTNLMKKQKLRQVRMIVKEHDHLKPWGQ 810
             E D+ PV ++QEK+A EQ       +KLRKKV  L+K+QK++QVR IVKE + LKPWGQ
Sbjct: 301  AEADSVPVTDEQEKLADEQGKLADEQEKLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQ 360

Query: 811  DAHVKVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIE 870
            +AHVKVGCRLIQLL++TAYIQPP+DQ+G GPPDIRPAFVH LKTITK+ QKTSRRYGVIE
Sbjct: 361  EAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITKDTQKTSRRYGVIE 420

Query: 871  CDPLVRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKR 930
            CDPLVR+G++KTARHMV+PYMPMLVPP+NWTGYD+GA+LFLPSYVMR HGAKQQRE VKR
Sbjct: 421  CDPLVRKGMDKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKR 480

Query: 931  VPKKQLEPVFEALDTLGRTKWRV---------------------------PLPEEPTVED 990
             P+KQLEPVFEALDTLG TKWRV                           PLPEEP  ED
Sbjct: 481  TPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTED 540

Query: 991  EAEIRKWKWKLKAAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMH 1050
            EAEIRKWKWKLKAAKKENSERHSQRCDIELKLA +RKMK+EEGFYYPHNLDFRGRAYPMH
Sbjct: 541  EAEIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMH 600

Query: 1051 PHLNHLGSDMCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLD 1110
            P+LNHLGSDMCRGILEF+EGR LG+SGLRWLKIHLANLYAGGVDKLS+ DR +FTENH+D
Sbjct: 601  PYLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVD 660

Query: 1111 EIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQ 1170
            EIFDSADRPLEG RWWLGAEDPFQCLA CINL EALRSPSPETT+S+MPVHQDGSCNGLQ
Sbjct: 661  EIFDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQ 720

Query: 1171 HYAALGRDKLSL--------NNPA----GVNAIVLDIIRSDAEKDPATNPNALHARLLIN 1230
            HYAALGRDKL          + PA    G+ A VLDI+R+DAEKDPATNPNALHARLLIN
Sbjct: 721  HYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLIN 780

Query: 1231 QVDRKLVKQTVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAA--------- 1290
            QVDRKLVKQTVMTSVYGVTY+GAR+QIK+RLKER SIADD+ LF A+CYAA         
Sbjct: 781  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGSIADDTALFVAACYAARTTLTALGE 840

Query: 1291 ----------------RVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLALQRE 1333
                            +VIASENQPVRW TPLGLPVVQPYRQLGRHLIKTSLQVL LQRE
Sbjct: 841  MFEAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRE 900