Cp4.1LG09g02230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g02230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEukaryotic translation initiation factor 5A
LocationCp4.1LG09 : 1185802 .. 1187513 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTTATTTCGTTTTCATTCTTATTCCTCAATTCGCTCCGATCCTTTGCCCCATCTATCCATGTAATTCTTGTTTAACATGTGATATCTATGCGTTATATCTTCTGCTTCAATTTTCCTATTCTTGTTGCCCTATTAATATAGCTTTTTCAAGGGTTATTCTGTATTCAATCTTGTTCTGTGATTTTCGGTTAATTGTGTTTCTTTGATTTTCTATGATTTTACTTTTAGATTTTTTTTTCCATAGATCACATGTTTGCTAGAATGAAACGAATGAATCGGTTGAAGCTACCATATTTCGATCTGTTTCTCTCTAGGGCTTTTGTCTTTCGTGGTTTCTGCATATTATTTGTTATGTTGTATTTATGTTCTTCAATTAGCAATCTTGGCCAAAGACTTATGCATTGCTGTTTTGTAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTTCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTATGAAGATTCTTTTTCCTTTCCGTTTTATACTTTTCCAGCAGGTTAGGTTTGTTTGTGCAAGTTTATGATTTCTGATTCTTGTAATCGTAAAACACAGGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTGTATGATCAAATTCTCTTTCTTTAGATCTTTGTCTCAGTTTCACTTACTCATCCATCCATTTTGAGTACTGCAGCTAATTCTAATTTCAATGAAAACTTACCAGATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGGTACGATTTTCTTATTGGCTGTTGACATTTTCTTGTCCTGCTGTGTTCAATTTGTCTTTAATTGCCTTGTGAAGACCACATTGCTTGTTAGGCCGAAACTATTTATTTCCTCCACTCCTTACAGTATATTATCCGGTACTTGTTTGGAGTTCTAAATGTGGATGGCTGACTATTTTTACTACCCCCTCCTTTATTATGCTTATGGGTTTGGATTTCTAGCGAAAATGTGTTAAAACGTCGATGATATAGTATGTCGATGATTAACTAACAAGAATTTCACATAATTGATAGATAGAAGAAGAACCCATGATTCCAAACCAATCACCTTTGGAGCTTTTCTATATAAAGATCAAATCTAATTATATGAGTGTCTAATATTGATATCTTGTGCTTAGTACTAACCTCTAGGAGTGTCTAATATTTGATATCTTGTGCTTAGTACTAACCTCTAGGGGGCTGATTAAGGAGTTATTTTATGAATAATTTTATGTTCATCTGCAAGTTTTCCGTTCCTTGCACGTTGGGGTCTTATTCGGAAGAACAATAGCTGCCATAGGCTATGAGTGGCATAATTTTGAAGATTGATTGTGTTGTACCTTGTGGCTCATGCAGATCAAGGATGGCTTTGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG

mRNA sequence

ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTTCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGATCAAGGATGGCTTTGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTTCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGATCAAGGATGGCTTTGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG

Protein sequence

MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSDESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Homology
[Close]
BLAST of Cp4.1LG09g02230 vs. Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.5e-82
Identity = 145/159 (91.19%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLT++GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ++LL+QIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.0e-82
Identity = 147/159 (92.45%), Postives = 156/159 (98.11%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SLLSQIKDGFAEGKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 7.8e-82
Identity = 144/159 (90.57%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           V IDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLT++GNTKDDLRLP+D
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LLSQIKDGFAEGKDL+V+VMS+MGEE+IC+LKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.0e-81
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LLS IKDGFAEGKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 ENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 8.7e-81
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLT+SGNTKDDLRLP+D
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ESLL Q+KDGF EGKDL+V+VMS+MGEEQI A+KDIG K
Sbjct: 121 ESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. TrEMBL
Match: W9S3D3_9ROSA (Eukaryotic translation initiation factor 5A OS=Morus notabilis GN=L484_013212 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.5e-83
Identity = 150/159 (94.34%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LLSQIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 EALLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. TrEMBL
Match: B3TLM2_ELAGV (Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.5e-83
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAID+FT+KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF+SLLTDSGNTKDDLRLP+D
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LL+QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. TrEMBL
Match: A0A097HTP7_9LAMI (Eukaryotic translation initiation factor 5A OS=Lindernia subracemosa PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 8.4e-83
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LL+QIKDGFAEGKDL+V+VMSSMGEEQICALKDIGPK
Sbjct: 121 ENLLAQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. TrEMBL
Match: A0A097HTR8_9LAMI (Eukaryotic translation initiation factor 5A OS=Lindernia brevidens PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.1e-82
Identity = 150/159 (94.34%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ESLL+QIKDGF EGKDL+V+VMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLTQIKDGFGEGKDLVVSVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. TrEMBL
Match: T1W2Z4_9LAMI (Eukaryotic translation initiation factor 5A OS=Picrorhiza kurrooa GN=eIF5A PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-82
Identity = 149/159 (93.71%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDL+LP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SLL+QIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. TAIR10
Match: AT1G13950.1 (AT1G13950.1 eukaryotic elongation factor 5A-1)

HSP 1 Score: 288.5 bits (737), Expect = 2.5e-78
Identity = 139/159 (87.42%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG++SLLTD+G+TKDDL+LP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ++LL QIK GF +GKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of Cp4.1LG09g02230 vs. TAIR10
Match: AT1G69410.1 (AT1G69410.1 eukaryotic elongation factor 5A-3)

HSP 1 Score: 286.2 bits (731), Expect = 1.2e-77
Identity = 134/159 (84.28%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKT+PQQAG IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHVNR DYQLIDISEDGF+SLLTD+G+TKDDL+LP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LL+Q+K+GF EGKD++V+VMS+MGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of Cp4.1LG09g02230 vs. TAIR10
Match: AT1G26630.1 (AT1G26630.1 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 265.8 bits (678), Expect = 1.7e-71
Identity = 124/157 (78.98%), Postives = 146/157 (92.99%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGF+SLLTDSG TKDDL+LP+D
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIG 158
           + L +Q++ GF EGKD++V+VMSSMGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]
BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: gi|703116003|ref|XP_010101033.1| (Eukaryotic translation initiation factor 5A-4 [Morus notabilis])

HSP 1 Score: 314.7 bits (805), Expect = 9.3e-83
Identity = 150/159 (94.34%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LLSQIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 EALLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: gi|743878693|ref|XP_010908239.1| (PREDICTED: eukaryotic translation initiation factor 5A-2-like [Elaeis guineensis])

HSP 1 Score: 314.7 bits (805), Expect = 9.3e-83
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAID+FT+KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF+SLLTDSGNTKDDLRLP+D
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LL+QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: gi|696586044|gb|AIT51845.1| (eukaryotic translation initiation factor 5A [Lindernia subracemosa])

HSP 1 Score: 314.3 bits (804), Expect = 1.2e-82
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LL+QIKDGFAEGKDL+V+VMSSMGEEQICALKDIGPK
Sbjct: 121 ENLLAQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: gi|696586042|gb|AIT51844.1| (eukaryotic translation initiation factor 5A [Lindernia brevidens])

HSP 1 Score: 313.9 bits (803), Expect = 1.6e-82
Identity = 150/159 (94.34%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ESLL+QIKDGF EGKDL+V+VMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLTQIKDGFGEGKDLVVSVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: gi|532759673|gb|AGU01536.1| (eukaryotic translation initiation factor 5A [Picrorhiza kurrooa])

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-82
Identity = 149/159 (93.71%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDL+LP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SLL+QIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g02230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF5A2_NICPL3.5e-8291.19Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A4_SOLTU6.0e-8292.45Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=... [more]
IF5A_MANES7.8e-8290.57Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2[more]
IF5A3_SOLLC1.0e-8192.45Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1[more]
IF5A3_SOLTU8.7e-8190.57Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=... [more]
BLAST of Cp4.1LG09g02230 vs. TrEMBL
Match NameE-valueIdentityDescription
W9S3D3_9ROSA6.5e-8394.34Eukaryotic translation initiation factor 5A OS=Morus notabilis GN=L484_013212 PE... [more]
B3TLM2_ELAGV6.5e-8394.34Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera PE=... [more]
A0A097HTP7_9LAMI8.4e-8394.34Eukaryotic translation initiation factor 5A OS=Lindernia subracemosa PE=2 SV=1[more]
A0A097HTR8_9LAMI1.1e-8294.34Eukaryotic translation initiation factor 5A OS=Lindernia brevidens PE=2 SV=1[more]
T1W2Z4_9LAMI1.4e-8293.71Eukaryotic translation initiation factor 5A OS=Picrorhiza kurrooa GN=eIF5A PE=2 ... [more]
BLAST of Cp4.1LG09g02230 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13950.12.5e-7887.42 eukaryotic elongation factor 5A-1[more]
AT1G69410.11.2e-7784.28 eukaryotic elongation factor 5A-3[more]
AT1G26630.11.7e-7178.98 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein[more]
BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703116003|ref|XP_010101033.1|9.3e-8394.34Eukaryotic translation initiation factor 5A-4 [Morus notabilis][more]
gi|743878693|ref|XP_010908239.1|9.3e-8394.34PREDICTED: eukaryotic translation initiation factor 5A-2-like [Elaeis guineensis... [more]
gi|696586044|gb|AIT51845.1|1.2e-8294.34eukaryotic translation initiation factor 5A [Lindernia subracemosa][more]
gi|696586042|gb|AIT51844.1|1.6e-8294.34eukaryotic translation initiation factor 5A [Lindernia brevidens][more]
gi|532759673|gb|AGU01536.1|2.1e-8293.71eukaryotic translation initiation factor 5A [Picrorhiza kurrooa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006452translational frameshifting
GO:0045905positive regulation of translational termination
GO:0045901positive regulation of translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO:0003746translation elongation factor activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020189Transl_elong_IF5A_C
IPR019769Trans_elong_IF5A_hypusine_site
IPR014722Rib_L2_dom2
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like_sf
IPR001884IF5A-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006452 translational frameshifting
cellular_component GO:0005840 ribosome
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g02230.1Cp4.1LG09g02230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5APIRPIRSF003025Transl_init_eIF5Acoord: 1..157
score: 7.8
IPR001884Translation elongation factor IF5APANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 2..159
score: 8.4E
IPR001884Translation elongation factor IF5ATIGRFAMsTIGR00037TIGR00037coord: 18..153
score: 3.3
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 15..93
score: 1.1
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 86..157
score: 1.1
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 86..156
score: 1.09
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 15..84
score: 8.9
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
scor
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..154
score: 1.5
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..154
score: 3.9
NoneNo IPR availablePANTHERPTHR11673:SF8SUBFAMILY NOT NAMEDcoord: 2..159
score: 8.4E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g02230Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g02230Melon (DHL92) v3.6.1cpemedB034
Cp4.1LG09g02230Melon (DHL92) v3.6.1cpemedB039
Cp4.1LG09g02230Silver-seed gourdcarcpeB0067
Cp4.1LG09g02230Silver-seed gourdcarcpeB0146
Cp4.1LG09g02230Silver-seed gourdcarcpeB0342
Cp4.1LG09g02230Cucumber (Chinese Long) v3cpecucB0020
Cp4.1LG09g02230Cucumber (Chinese Long) v3cpecucB0027
Cp4.1LG09g02230Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g02230Cucumber (Chinese Long) v3cpecucB0047
Cp4.1LG09g02230Wax gourdcpewgoB0023
Cp4.1LG09g02230Wax gourdcpewgoB0051
Cp4.1LG09g02230Wax gourdcpewgoB0058
Cp4.1LG09g02230Wax gourdcpewgoB0062
Cp4.1LG09g02230Cucurbita pepo (Zucchini)cpecpeB031
Cp4.1LG09g02230Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG09g02230Cucurbita pepo (Zucchini)cpecpeB054
Cp4.1LG09g02230Cucumber (Gy14) v1cgycpeB0248
Cp4.1LG09g02230Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g02230Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g02230Cucurbita maxima (Rimu)cmacpeB458
Cp4.1LG09g02230Cucurbita maxima (Rimu)cmacpeB695
Cp4.1LG09g02230Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g02230Cucurbita moschata (Rifu)cmocpeB647
Cp4.1LG09g02230Wild cucumber (PI 183967)cpecpiB018
Cp4.1LG09g02230Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g02230Cucumber (Chinese Long) v2cpecuB026
Cp4.1LG09g02230Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g02230Bottle gourd (USVL1VR-Ls)cpelsiB024
Cp4.1LG09g02230Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g02230Watermelon (Charleston Gray)cpewcgB040
Cp4.1LG09g02230Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g02230Watermelon (Charleston Gray)cpewcgB049
Cp4.1LG09g02230Watermelon (97103) v1cpewmB031
Cp4.1LG09g02230Watermelon (97103) v1cpewmB051
Cp4.1LG09g02230Watermelon (97103) v1cpewmB059
Cp4.1LG09g02230Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g02230Melon (DHL92) v3.5.1cpemeB029
Cp4.1LG09g02230Melon (DHL92) v3.5.1cpemeB034
Cp4.1LG09g02230Cucumber (Gy14) v2cgybcpeB009
Cp4.1LG09g02230Cucumber (Gy14) v2cgybcpeB014
Cp4.1LG09g02230Cucumber (Gy14) v2cgybcpeB581