Cp4.1LG09g02050 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGAATTTTACCCAAACGGTCAAACACCACCACCAACACTCTATATATACCTCATAATAATAAATAAATAAATAAAATAAAATAAAATAAAATAATAATAATTAAAATTTAGCCTACTCGTGCTCGTATATAGTAATAGCCCTTACCTTCTAATGCTCTTTAATTCTTGACCCTTTTGCCACCACTTTCCCTTCTCCTACCTCTCTAGGGTTCTTCTTCAAGTTCTTCGAGCTTCTTCTGCGTTCAATCATGGCGGTTTTCGTGTTCTTAGTGTTCTTCCTTGCCCTAACCGGTCAATCTTGTAAGTTCCGATTTAGGTTTAAGTTTCTTCCACAAATTTCTTCTGATTTCTCATTAATTTTCGGTTTCTTTTCGTTTCAGACGCCAACTATTGCTTGTGTAGAGATGGAGTGAGCCAACAAGTTCTTCAAAAAGCACTGGATTATGCCTGTGGCGCCGGAGCTGACTGTTCTCCGATCCTCTCCAATGGCGCCTGTTTTCAGCCGAACACTGTCAAAGATCACTGCAGCTACGCCGTCAACAGCTATTTCCAGAGAAAAGGTCAAGTCCAGGGAAGCTGTGACTTCTCCGGCGCCGCCACTCCCAGCGTTTCCCTCACCGCCTGTAAGCCGGACTTCCTGGTTGTTACGCCTCTTTACACCATTCTCCGACTGACTTTCGTGTTGTTTTTTTTAATTTATTTACAGCTGTGCCCTCCGGCTGCGTCTACCCTTCGAACCCCAGGTAGTACTCCGCTTCACTCATTTTATCATCTTTAATAATGCCTAATGTTTAAGCCATTGATTCCATGAAACTTCGATTTGTCGGTGGTGAGTTTGGATTTCAATGCCGCTGTTCTAAGAGTATTAGATCTTGTGTAAATATCATATGAACTGATCTGAGCCATTGTCGACATGTCGTTTGTTGTTGAAGAGCTTGAATCGTGATTTTGTTAAGAAATTTGTCTGAACTTGTTTATGTTTTATTTAAGCAATGCGGGAACCTCGCCGACGAACTCCGGCGGAACTACGCCGGGGACGACGAATCCGGGAATGACGCCGTCGGTATTCGGTAACGGAATCAGTCCGAGTGGGAGCGGCGCCGGGTTCAACGACGGGAGCGGTGGCGTGGGTTTCAATGAGAAGATGAACTTGCTTTTGAGTGTGGGCTTAACTCTGTGGCTTTCCGTACTGTTGTTCTAGGGATGATGAAAATCTCGTTGAAGGGTTGAGATTTTGCCACGTATGTAGGGGGAATATGGATTGCTTTTTGACCATTGGATTTTGGTGTTTGGTTGTATATGCGGTTAAAAGTTATTGATTTACCCTTTTCCCCCTCTCGTTAAATTAGTTGTAATCATCCTCCTTTATTAATTAATGTAATGTGGTTTTTTCAGTTTAATATTAGCAATAGGACCCGCCCCGATCTGGGTGGGAGTGAAGAATATTTTTTTCGGTTACATAAATAGAGTCGAGGATCGGATTATATTCTACGTCTTAAT GGGAATTTTACCCAAACGGTCAAACACCACCACCAACACTCTATATATACCTCATAATAATAAATAAATAAATAAAATAAAATAAAATAAAATAATAATAATTAAAATTTAGCCTACTCGTGCTCGTATATAGTAATAGCCCTTACCTTCTAATGCTCTTTAATTCTTGACCCTTTTGCCACCACTTTCCCTTCTCCTACCTCTCTAGGGTTCTTCTTCAAGTTCTTCGAGCTTCTTCTGCGTTCAATCATGGCGGTTTTCGTGTTCTTAGTGTTCTTCCTTGCCCTAACCGGTCAATCTTACGCCAACTATTGCTTGTGTAGAGATGGAGTGAGCCAACAAGTTCTTCAAAAAGCACTGGATTATGCCTGTGGCGCCGGAGCTGACTGTTCTCCGATCCTCTCCAATGGCGCCTGTTTTCAGCCGAACACTGTCAAAGATCACTGCAGCTACGCCGTCAACAGCTATTTCCAGAGAAAAGGTCAAGTCCAGGGAAGCTGTGACTTCTCCGGCGCCGCCACTCCCAGCGTTTCCCTCACCGCCTCTGTGCCCTCCGGCTGCGTCTACCCTTCGAACCCCAGCAATGCGGGAACCTCGCCGACGAACTCCGGCGGAACTACGCCGGGGACGACGAATCCGGGAATGACGCCGTCGGTATTCGGTAACGGAATCAGTCCGAGTGGGAGCGGCGCCGGGTTCAACGACGGGAGCGGTGGCGTGGGTTTCAATGAGAAGATGAACTTGCTTTTGAGTGTGGGCTTAACTCTGTGGCTTTCCGTACTGTTGTTCTAGGGATGATGAAAATCTCGTTGAAGGGTTGAGATTTTGCCACGTATGTAGGGGGAATATGGATTGCTTTTTGACCATTGGATTTTGGTGTTTGGTTGTATATGCGGTTAAAAGTTATTGATTTACCCTTTTCCCCCTCTCGTTAAATTAGTTGTAATCATCCTCCTTTATTAATTAATGTAATGTGGTTTTTTCAGTTTAATATTAGCAATAGGACCCGCCCCGATCTGGGTGGGAGTGAAGAATATTTTTTTCGGTTACATAAATAGAGTCGAGGATCGGATTATATTCTACGTCTTAAT ATGGCGGTTTTCGTGTTCTTAGTGTTCTTCCTTGCCCTAACCGGTCAATCTTACGCCAACTATTGCTTGTGTAGAGATGGAGTGAGCCAACAAGTTCTTCAAAAAGCACTGGATTATGCCTGTGGCGCCGGAGCTGACTGTTCTCCGATCCTCTCCAATGGCGCCTGTTTTCAGCCGAACACTGTCAAAGATCACTGCAGCTACGCCGTCAACAGCTATTTCCAGAGAAAAGGTCAAGTCCAGGGAAGCTGTGACTTCTCCGGCGCCGCCACTCCCAGCGTTTCCCTCACCGCCTCTGTGCCCTCCGGCTGCGTCTACCCTTCGAACCCCAGCAATGCGGGAACCTCGCCGACGAACTCCGGCGGAACTACGCCGGGGACGACGAATCCGGGAATGACGCCGTCGGTATTCGGTAACGGAATCAGTCCGAGTGGGAGCGGCGCCGGGTTCAACGACGGGAGCGGTGGCGTGGGTTTCAATGAGAAGATGAACTTGCTTTTGAGTGTGGGCTTAACTCTGTGGCTTTCCGTACTGTTGTTCTAG MAVFVFLVFFLALTGQSYANYCLCRDGVSQQVLQKALDYACGAGADCSPILSNGACFQPNTVKDHCSYAVNSYFQRKGQVQGSCDFSGAATPSVSLTASVPSGCVYPSNPSNAGTSPTNSGGTTPGTTNPGMTPSVFGNGISPSGSGAGFNDGSGGVGFNEKMNLLLSVGLTLWLSVLLF
BLAST of Cp4.1LG09g02050 vs. Swiss-Prot
Match: PDCB3_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30 Identity = 80/164 (48.78%), Postives = 103/164 (62.80%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. Swiss-Prot
Match: PDCB1_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana GN=PDCB1 PE=1 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 4.8e-27 Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. Swiss-Prot
Match: PDCB2_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana GN=PDCB2 PE=1 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 7.6e-25 Identity = 74/166 (44.58%), Postives = 101/166 (60.84%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. Swiss-Prot
Match: PDCB4_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana GN=PDCB4 PE=1 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23 Identity = 72/167 (43.11%), Postives = 98/167 (58.68%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. Swiss-Prot
Match: CBX8D_ARATH (Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana GN=At1g26450 PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 4.8e-19 Identity = 66/161 (40.99%), Postives = 89/161 (55.28%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TrEMBL
Match: A0A0A0KQT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606660 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 2.4e-81 Identity = 158/185 (85.41%), Postives = 168/185 (90.81%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TrEMBL
Match: A0A0L9TMF4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g129500 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 1.9e-46 Identity = 111/177 (62.71%), Postives = 135/177 (76.27%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TrEMBL
Match: A0A0S3R2L4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G255400 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 1.9e-46 Identity = 111/177 (62.71%), Postives = 135/177 (76.27%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TrEMBL
Match: A0A0A0KDN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366460 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 7.2e-46 Identity = 116/204 (56.86%), Postives = 133/204 (65.20%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TrEMBL
Match: C6TDJ7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 1.0e-44 Identity = 105/187 (56.15%), Postives = 136/187 (72.73%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TAIR10
Match: AT2G03505.1 (AT2G03505.1 Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 148.7 bits (374), Expect = 3.5e-36 Identity = 90/180 (50.00%), Postives = 118/180 (65.56%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TAIR10
Match: AT1G13830.1 (AT1G13830.1 Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 136.3 bits (342), Expect = 1.8e-32 Identity = 86/196 (43.88%), Postives = 114/196 (58.16%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TAIR10
Match: AT1G18650.1 (AT1G18650.1 plasmodesmata callose-binding protein 3) HSP 1 Score: 133.7 bits (335), Expect = 1.2e-31 Identity = 80/164 (48.78%), Postives = 103/164 (62.80%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TAIR10
Match: AT5G61130.1 (AT5G61130.1 plasmodesmata callose-binding protein 1) HSP 1 Score: 122.5 bits (306), Expect = 2.7e-28 Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. TAIR10
Match: AT5G08000.1 (AT5G08000.1 glucan endo-1,3-beta-glucosidase-like protein 3) HSP 1 Score: 115.2 bits (287), Expect = 4.3e-26 Identity = 74/166 (44.58%), Postives = 101/166 (60.84%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. NCBI nr
Match: gi|449434728|ref|XP_004135148.1| (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus]) HSP 1 Score: 309.7 bits (792), Expect = 3.4e-81 Identity = 158/185 (85.41%), Postives = 168/185 (90.81%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. NCBI nr
Match: gi|659091216|ref|XP_008446432.1| (PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 2 [Cucumis melo]) HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77 Identity = 156/191 (81.68%), Postives = 164/191 (85.86%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. NCBI nr
Match: gi|920687757|gb|KOM31740.1| (hypothetical protein LR48_Vigan01g129500 [Vigna angularis]) HSP 1 Score: 193.7 bits (491), Expect = 2.7e-46 Identity = 111/177 (62.71%), Postives = 135/177 (76.27%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. NCBI nr
Match: gi|951005162|ref|XP_014508059.1| (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Vigna radiata var. radiata]) HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46 Identity = 111/177 (62.71%), Postives = 135/177 (76.27%), Query Frame = 1
BLAST of Cp4.1LG09g02050 vs. NCBI nr
Match: gi|449452859|ref|XP_004144176.1| (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus]) HSP 1 Score: 191.8 bits (486), Expect = 1.0e-45 Identity = 116/204 (56.86%), Postives = 133/204 (65.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|