Cp4.1LG09g02020 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCTTATCCCCTGCCTTGTGCCTGCGGCGGAATTTAAACATTTGGTCCAAAAATCTCAGCCATGGCGTATCTTCCGATGATCAAAAGCTACTTTTTCTACTGAAATCATGCAATGGAACTTCAGAAATCTCTCAAATCCACTGCTACATGGTCAAGACTGCTCTTGACCTCGTCCCTTTCACATTAAGCAAACTTCTTGCATCCGCCATACTGGATATCAAGTATGCAGCTTCCATTTTCAAGGTTATACGAAACCCGAATCTCTTTATGTTCAATACTATGCTTAGAGGCTATTCTAATAGCGATGATTCAAAACAAGCTTTTGTTATTTTCAATGACCTGAGGAATCAGGACTTCTTGCCTGATGAGTTTTCTTTCATAACAATTCTGAAAGCCTGTGCTCGAGAATTAGCAATTGATGCTGGGCAGGGGGTTCATGGGATTGTTCATAGATCTGGGCATGGTTTATTCAGTCAACTAAATAATATGCTTCTACATTTTTACTGCGCGTGTGGCCAAATTGGAGATGCCCGTAAACTGTTTGATGAAATTCCTCAAAGAAACGACTTGGTATCGTGGAATACTTTGATGGGTGGTTATCTTCATGCATCTCAGCCCACTGTTGTTTTAGATTTTTTTAGACAAATGTGTAGGAGAGGTTTGATAGCCGGTGCTAATACAGTATTAACTGTTTCATCTGCTGTGGGTGATGTCGGCCATTCCTTAGATGGAAGGTCTCTTCATGGACAATGTATTAAGCTGGGTTTATGTTCTGATCTCAATGTGGTTACTTGTTTGATTAATATGTATGCAAAATTTAAAGATTTGGAATCAGGACAGCTGATCTTTGATGAAGTTGCTGAGAAGGATGTTGTTGTCTGGAATTGTTTGATAGATAACTATGCTAGAAATGGCATGTTAGAAATCGCAATAGATTCACTACATCTCATGAAACATGAAGGAAAGCAACCCAATTCATCCACATTGGCAGGATTACTTTCAGCTTGTTCTACGTTCGGTGCTGTCGGTACAGGTAAATACCTTGGCCATTATGTGGAGGAGGAAGGACTGGTTCTAGATGCTGTTCTTGGAACAGCTCTAATTGATATGTATGCTAAATGTGGGTTCCTAGACAAGGCGATCGACATTTTCGATAAGATAAAGGATAAAGATGTAAAGACTTGGACCGCCATGATCACTGGTTATGGGGCTCATGGTCAGACAAAGAAGGCTATTGACACTTTGTTTAGGATGGAGGAGGAGGGTTTTAGGCCCAACGAAATAACTTTCTTGGCTGTCTTGAATGCTTGTAGTCATGGAGGCATAGTGATAGAGGGTATGAGATGTTTCAAGAGAATGGTGTATGAATATCGAATGACACCAAAGATTGAGCACTATGGATGCATTATTGATCTTCTTGGTCGTGCAGGGTTGTTGGAGGAAGCTCATAAGCTAATCAAGAGCTTGCCTTCCGAGGGCGATATAACGGGTTGGCGTGCGCTGCTGGCAGCCTGTAGGGTATATGGAGATGTTGAGCTGGGAGAGTCTGTGAAGAGAATGCTAGTTGATTTAAATGATGAACACCCCACGGATTCAATGCTCCTGTCTAGTACATATGCTGTTGCTGGGAGGCTGTCTGATTATACACAGTATCAGCAAATTGAGGAAGAAAACAGAATGAAAGAAGGAATTAGTTCATCTCAAATGCGAACTGAGAAGGCAAGAAAAGAAGCTGGTCGTAGTATGATTGAGATGGATAATTTGTATTAG ATGAGCTTATCCCCTGCCTTGTGCCTGCGGCGGAATTTAAACATTTGGTCCAAAAATCTCAGCCATGGCGTATCTTCCGATGATCAAAAGCTACTTTTTCTACTGAAATCATGCAATGGAACTTCAGAAATCTCTCAAATCCACTGCTACATGGTCAAGACTGCTCTTGACCTCGTCCCTTTCACATTAAGCAAACTTCTTGCATCCGCCATACTGGATATCAAGAGAGGTTTGATAGCCGGTGCTAATACAGTATTAACTGTTTCATCTGCTGTGGGTGATGTCGGCCATTCCTTAGATGGAAGGTCTCTTCATGGACAATGTATTAAGCTGGGTTTATGTTCTGATCTCAATGTGGTTACTTGTTTGATTAATATGTATGCAAAATTTAAAGATTTGGAATCAGGACAGCTGATCTTTGATGAAGTTGCTGAGAAGGATGTTGTTGTCTGGAATTGTTTGATAGATAACTATGCTAGAAATGGCATTACATATGCTGTTGCTGGGAGGCTGTCTGATTATACACAGTATCAGCAAATTGAGGAAGAAAACAGAATGAAAGAAGGAATTAGTTCATCTCAAATGCGAACTGAGAAGGCAAGAAAAGAAGCTGGTCGTAGTATGATTGAGATGGATAATTTGTATTAG ATGAGCTTATCCCCTGCCTTGTGCCTGCGGCGGAATTTAAACATTTGGTCCAAAAATCTCAGCCATGGCGTATCTTCCGATGATCAAAAGCTACTTTTTCTACTGAAATCATGCAATGGAACTTCAGAAATCTCTCAAATCCACTGCTACATGGTCAAGACTGCTCTTGACCTCGTCCCTTTCACATTAAGCAAACTTCTTGCATCCGCCATACTGGATATCAAGAGAGGTTTGATAGCCGGTGCTAATACAGTATTAACTGTTTCATCTGCTGTGGGTGATGTCGGCCATTCCTTAGATGGAAGGTCTCTTCATGGACAATGTATTAAGCTGGGTTTATGTTCTGATCTCAATGTGGTTACTTGTTTGATTAATATGTATGCAAAATTTAAAGATTTGGAATCAGGACAGCTGATCTTTGATGAAGTTGCTGAGAAGGATGTTGTTGTCTGGAATTGTTTGATAGATAACTATGCTAGAAATGGCATTACATATGCTGTTGCTGGGAGGCTGTCTGATTATACACAGTATCAGCAAATTGAGGAAGAAAACAGAATGAAAGAAGGAATTAGTTCATCTCAAATGCGAACTGAGAAGGCAAGAAAAGAAGCTGGTCGTAGTATGATTGAGATGGATAATTTGTATTAG MSLSPALCLRRNLNIWSKNLSHGVSSDDQKLLFLLKSCNGTSEISQIHCYMVKTALDLVPFTLSKLLASAILDIKRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYARNGITYAVAGRLSDYTQYQQIEEENRMKEGISSSQMRTEKARKEAGRSMIEMDNLY
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PPR60_ARATH (Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.5e-14 Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 4.0e-12 Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09 Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09 Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP245_ARATH (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09 Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: A0A0A0KL36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168810 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28 Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: A0A067L1U6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15585 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: A0A061EAE1_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao GN=TCM_011749 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20 Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: M5XBM9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003920mg PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 8.1e-20 Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: K4ATP6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19 Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT1G26900.1 (AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15 Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT3G11460.1 (AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 73.2 bits (178), Expect = 2.2e-13 Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT3G09040.1 (AT3G09040.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 65.1 bits (157), Expect = 6.1e-11 Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT4G35130.1 (AT4G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10 Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT3G21470.1 (AT3G21470.1 Pentatricopeptide repeat (PPR-like) superfamily protein) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10 Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|449451962|ref|XP_004143729.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Cucumis sativus]) HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28 Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|659073222|ref|XP_008467317.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Cucumis melo]) HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28 Identity = 61/89 (68.54%), Postives = 78/89 (87.64%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|802566482|ref|XP_012067617.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]) HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|590700341|ref|XP_007046138.1| (Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]) HSP 1 Score: 107.1 bits (266), Expect = 4.0e-20 Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|645229831|ref|XP_008221644.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Prunus mume]) HSP 1 Score: 105.9 bits (263), Expect = 8.8e-20 Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |