Cp4.1LG09g02020 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g02020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG09 : 1141644 .. 1143416 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTATCCCCTGCCTTGTGCCTGCGGCGGAATTTAAACATTTGGTCCAAAAATCTCAGCCATGGCGTATCTTCCGATGATCAAAAGCTACTTTTTCTACTGAAATCATGCAATGGAACTTCAGAAATCTCTCAAATCCACTGCTACATGGTCAAGACTGCTCTTGACCTCGTCCCTTTCACATTAAGCAAACTTCTTGCATCCGCCATACTGGATATCAAGTATGCAGCTTCCATTTTCAAGGTTATACGAAACCCGAATCTCTTTATGTTCAATACTATGCTTAGAGGCTATTCTAATAGCGATGATTCAAAACAAGCTTTTGTTATTTTCAATGACCTGAGGAATCAGGACTTCTTGCCTGATGAGTTTTCTTTCATAACAATTCTGAAAGCCTGTGCTCGAGAATTAGCAATTGATGCTGGGCAGGGGGTTCATGGGATTGTTCATAGATCTGGGCATGGTTTATTCAGTCAACTAAATAATATGCTTCTACATTTTTACTGCGCGTGTGGCCAAATTGGAGATGCCCGTAAACTGTTTGATGAAATTCCTCAAAGAAACGACTTGGTATCGTGGAATACTTTGATGGGTGGTTATCTTCATGCATCTCAGCCCACTGTTGTTTTAGATTTTTTTAGACAAATGTGTAGGAGAGGTTTGATAGCCGGTGCTAATACAGTATTAACTGTTTCATCTGCTGTGGGTGATGTCGGCCATTCCTTAGATGGAAGGTCTCTTCATGGACAATGTATTAAGCTGGGTTTATGTTCTGATCTCAATGTGGTTACTTGTTTGATTAATATGTATGCAAAATTTAAAGATTTGGAATCAGGACAGCTGATCTTTGATGAAGTTGCTGAGAAGGATGTTGTTGTCTGGAATTGTTTGATAGATAACTATGCTAGAAATGGCATGTTAGAAATCGCAATAGATTCACTACATCTCATGAAACATGAAGGAAAGCAACCCAATTCATCCACATTGGCAGGATTACTTTCAGCTTGTTCTACGTTCGGTGCTGTCGGTACAGGTAAATACCTTGGCCATTATGTGGAGGAGGAAGGACTGGTTCTAGATGCTGTTCTTGGAACAGCTCTAATTGATATGTATGCTAAATGTGGGTTCCTAGACAAGGCGATCGACATTTTCGATAAGATAAAGGATAAAGATGTAAAGACTTGGACCGCCATGATCACTGGTTATGGGGCTCATGGTCAGACAAAGAAGGCTATTGACACTTTGTTTAGGATGGAGGAGGAGGGTTTTAGGCCCAACGAAATAACTTTCTTGGCTGTCTTGAATGCTTGTAGTCATGGAGGCATAGTGATAGAGGGTATGAGATGTTTCAAGAGAATGGTGTATGAATATCGAATGACACCAAAGATTGAGCACTATGGATGCATTATTGATCTTCTTGGTCGTGCAGGGTTGTTGGAGGAAGCTCATAAGCTAATCAAGAGCTTGCCTTCCGAGGGCGATATAACGGGTTGGCGTGCGCTGCTGGCAGCCTGTAGGGTATATGGAGATGTTGAGCTGGGAGAGTCTGTGAAGAGAATGCTAGTTGATTTAAATGATGAACACCCCACGGATTCAATGCTCCTGTCTAGTACATATGCTGTTGCTGGGAGGCTGTCTGATTATACACAGTATCAGCAAATTGAGGAAGAAAACAGAATGAAAGAAGGAATTAGTTCATCTCAAATGCGAACTGAGAAGGCAAGAAAAGAAGCTGGTCGTAGTATGATTGAGATGGATAATTTGTATTAG

mRNA sequence

ATGAGCTTATCCCCTGCCTTGTGCCTGCGGCGGAATTTAAACATTTGGTCCAAAAATCTCAGCCATGGCGTATCTTCCGATGATCAAAAGCTACTTTTTCTACTGAAATCATGCAATGGAACTTCAGAAATCTCTCAAATCCACTGCTACATGGTCAAGACTGCTCTTGACCTCGTCCCTTTCACATTAAGCAAACTTCTTGCATCCGCCATACTGGATATCAAGAGAGGTTTGATAGCCGGTGCTAATACAGTATTAACTGTTTCATCTGCTGTGGGTGATGTCGGCCATTCCTTAGATGGAAGGTCTCTTCATGGACAATGTATTAAGCTGGGTTTATGTTCTGATCTCAATGTGGTTACTTGTTTGATTAATATGTATGCAAAATTTAAAGATTTGGAATCAGGACAGCTGATCTTTGATGAAGTTGCTGAGAAGGATGTTGTTGTCTGGAATTGTTTGATAGATAACTATGCTAGAAATGGCATTACATATGCTGTTGCTGGGAGGCTGTCTGATTATACACAGTATCAGCAAATTGAGGAAGAAAACAGAATGAAAGAAGGAATTAGTTCATCTCAAATGCGAACTGAGAAGGCAAGAAAAGAAGCTGGTCGTAGTATGATTGAGATGGATAATTTGTATTAG

Coding sequence (CDS)

ATGAGCTTATCCCCTGCCTTGTGCCTGCGGCGGAATTTAAACATTTGGTCCAAAAATCTCAGCCATGGCGTATCTTCCGATGATCAAAAGCTACTTTTTCTACTGAAATCATGCAATGGAACTTCAGAAATCTCTCAAATCCACTGCTACATGGTCAAGACTGCTCTTGACCTCGTCCCTTTCACATTAAGCAAACTTCTTGCATCCGCCATACTGGATATCAAGAGAGGTTTGATAGCCGGTGCTAATACAGTATTAACTGTTTCATCTGCTGTGGGTGATGTCGGCCATTCCTTAGATGGAAGGTCTCTTCATGGACAATGTATTAAGCTGGGTTTATGTTCTGATCTCAATGTGGTTACTTGTTTGATTAATATGTATGCAAAATTTAAAGATTTGGAATCAGGACAGCTGATCTTTGATGAAGTTGCTGAGAAGGATGTTGTTGTCTGGAATTGTTTGATAGATAACTATGCTAGAAATGGCATTACATATGCTGTTGCTGGGAGGCTGTCTGATTATACACAGTATCAGCAAATTGAGGAAGAAAACAGAATGAAAGAAGGAATTAGTTCATCTCAAATGCGAACTGAGAAGGCAAGAAAAGAAGCTGGTCGTAGTATGATTGAGATGGATAATTTGTATTAG

Protein sequence

MSLSPALCLRRNLNIWSKNLSHGVSSDDQKLLFLLKSCNGTSEISQIHCYMVKTALDLVPFTLSKLLASAILDIKRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYARNGITYAVAGRLSDYTQYQQIEEENRMKEGISSSQMRTEKARKEAGRSMIEMDNLY
Homology
[Close]
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PPR60_ARATH (Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-14
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 1 

Query: 75  KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLE 134
           K  ++   +T+L+  SA+ D+G      S H  CIK+GL  DL+++T LI MY K   + 
Sbjct: 220 KSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGIS 279

Query: 135 SGQLIFDEVAEKDVVVWNCLIDNYARNGITYAVAGRLSDYTQYQQIEEENRMKEGISSSQ 194
           S + IFD    KDVV WNC+ID YA+ G+       L    +Y++++  +    G+ SS 
Sbjct: 280 SARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQ-MKYEKMKPNSSTFVGLLSSC 339

Query: 195 MRTEKA 201
             +E A
Sbjct: 340 AYSEAA 344

[Close]
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.0e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 101 GRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYAR 160
           GRSLHGQC+K GL S++ V+   I MY K   +E+G+ +FDE+  K ++ WN +I  Y++
Sbjct: 175 GRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQ 234

Query: 161 NGITYAV 168
           NG+ Y V
Sbjct: 235 NGLAYDV 241

[Close]
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 83  NTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDE 142
           +T+ +V SA+G V +   G  +H + IKLGL S++ V + L++MY+K + +E+   +F+ 
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387

Query: 143 VAEKDVVVWNCLIDNYARNGITYAV 168
           + EK+ V WN +I  YA NG ++ V
Sbjct: 388 LEEKNDVFWNAMIRGYAHNGESHKV 412

[Close]
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 99  LDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNY 158
           L+GR++HG  ++ G    + + T LI+MY +   L+S ++IFD +AEK+V+ WN +I  Y
Sbjct: 347 LEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406

Query: 159 ARNGITYA 167
            +NG  Y+
Sbjct: 407 VQNGKNYS 414

[Close]
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match: PP245_ARATH (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 1 

Query: 101 GRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYAR 160
           G+ LH + IK G+CSD+ V + LI+MY K   + S + +FDE+ E++V  WN +I  Y  
Sbjct: 65  GKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMS 124

Query: 161 NGITYAVAGRLSDYTQYQQIEEENRMKEGISSSQMRTEKARKEAGRSMIEMDNL 215
           NG     +G   + +  +       M +G    ++  EKAR+   R   E+ N+
Sbjct: 125 NGDAVLASGLFEEISVCRNTVTWIEMIKGY-GKRIEIEKARELFERMPFELKNV 177

[Close]
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: A0A0A0KL36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168810 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28
Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 1 

Query: 75  KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLE 134
           +RGLIA   T+L+V+SAVGDVG+++DGRSL+G CIKLGL S+L VVTCLI+MY KF DL+
Sbjct: 219 RRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKFGDLD 278

Query: 135 SGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
               IF+EVAEKDV+VWNCLIDNYA+NG+
Sbjct: 279 EAGTIFNEVAEKDVIVWNCLIDNYAKNGL 307

[Close]
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: A0A067L1U6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15585 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1 

Query: 59  VPFTLSKLLASAILDIKRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLN 118
           +PF  +KL        + GL   A T+L+V SA  DVG  + G S+HG  IK G CS+LN
Sbjct: 199 LPFETTKLFRQMF---RSGLQVSATTLLSVLSAFADVGDPIGGMSIHGHSIKTGFCSNLN 258

Query: 119 VVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
           VVTCLI MY K  D++SG+ IFD V EKDV++WNC+ID YA+ G+
Sbjct: 259 VVTCLIEMYTKTGDIDSGRRIFDGVVEKDVILWNCMIDKYAKAGL 300

[Close]
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: A0A061EAE1_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao GN=TCM_011749 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 

Query: 78  LIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQ 137
           L A   T LTV SAVG+ G SL G+SLHG C+K+G C D N+V+ LI+MYAK  ++ SG+
Sbjct: 221 LTASVPTFLTVLSAVGEAGDSLGGQSLHGHCLKVGFCFDSNLVSALIDMYAKTGNVYSGR 280

Query: 138 LIFDEVAEKDVVVWNCLIDNYARNGI 164
            +FDEVA KDVV+WNC+I  YA NG+
Sbjct: 281 RVFDEVAVKDVVLWNCMISKYAENGL 306

[Close]
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: M5XBM9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003920mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.1e-20
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 75  KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLE 134
           + G  A   TVL + SA+GD+G  L G SLHG CIK+G CSDL+V+T LI+ YAK   ++
Sbjct: 169 RSGFEASVTTVLNLLSAIGDLGSYLGGESLHGYCIKIGFCSDLHVLTALIDTYAKNGQID 228

Query: 135 SGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
            G+ IFD VA KDVV+WNCL+D YA+ G+
Sbjct: 229 LGRRIFDGVAVKDVVLWNCLVDKYAKCGL 257

[Close]
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match: K4ATP6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 1 

Query: 69  SAILDI-----KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCL 128
           SA+LD+     + G+ A   T+L V SA+G++  +L G SLHG CIK+G C  L V+T  
Sbjct: 209 SAVLDMFVELRRDGIYASVTTMLCVLSAIGELRIALVGESLHGYCIKIGFCDSLKVLTAF 268

Query: 129 INMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
           I+MY K   + SG+ +FDE ++KDVV+WNCLID YA+NG+
Sbjct: 269 ISMYGKIGCVSSGRSLFDEASQKDVVLWNCLIDGYAKNGL 308

[Close]
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT1G26900.1 (AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 1 

Query: 75  KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLE 134
           K  ++   +T+L+  SA+ D+G      S H  CIK+GL  DL+++T LI MY K   + 
Sbjct: 220 KSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGIS 279

Query: 135 SGQLIFDEVAEKDVVVWNCLIDNYARNGITYAVAGRLSDYTQYQQIEEENRMKEGISSSQ 194
           S + IFD    KDVV WNC+ID YA+ G+       L    +Y++++  +    G+ SS 
Sbjct: 280 SARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQ-MKYEKMKPNSSTFVGLLSSC 339

Query: 195 MRTEKA 201
             +E A
Sbjct: 340 AYSEAA 344

[Close]
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT3G11460.1 (AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-13
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 101 GRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYAR 160
           GRSLHGQC+K GL S++ V+   I MY K   +E+G+ +FDE+  K ++ WN +I  Y++
Sbjct: 175 GRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQ 234

Query: 161 NGITYAV 168
           NG+ Y V
Sbjct: 235 NGLAYDV 241

[Close]
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT3G09040.1 (AT3G09040.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-11
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 83  NTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDE 142
           +T+ +V SA+G V +   G  +H + IKLGL S++ V + L++MY+K + +E+   +F+ 
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387

Query: 143 VAEKDVVVWNCLIDNYARNGITYAV 168
           + EK+ V WN +I  YA NG ++ V
Sbjct: 388 LEEKNDVFWNAMIRGYAHNGESHKV 412

[Close]
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT4G35130.1 (AT4G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 99  LDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNY 158
           L+GR++HG  ++ G    + + T LI+MY +   L+S ++IFD +AEK+V+ WN +I  Y
Sbjct: 347 LEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406

Query: 159 ARNGITYA 167
            +NG  Y+
Sbjct: 407 VQNGKNYS 414

[Close]
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match: AT3G21470.1 (AT3G21470.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 1 

Query: 101 GRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYAR 160
           G+ LH + IK G+CSD+ V + LI+MY K   + S + +FDE+ E++V  WN +I  Y  
Sbjct: 65  GKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMS 124

Query: 161 NGITYAVAGRLSDYTQYQQIEEENRMKEGISSSQMRTEKARKEAGRSMIEMDNL 215
           NG     +G   + +  +       M +G    ++  EKAR+   R   E+ N+
Sbjct: 125 NGDAVLASGLFEEISVCRNTVTWIEMIKGY-GKRIEIEKARELFERMPFELKNV 177

[Close]
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|449451962|ref|XP_004143729.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28
Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 1 

Query: 75  KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLE 134
           +RGLIA   T+L+V+SAVGDVG+++DGRSL+G CIKLGL S+L VVTCLI+MY KF DL+
Sbjct: 219 RRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKFGDLD 278

Query: 135 SGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
               IF+EVAEKDV+VWNCLIDNYA+NG+
Sbjct: 279 EAGTIFNEVAEKDVIVWNCLIDNYAKNGL 307

[Close]
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|659073222|ref|XP_008467317.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28
Identity = 61/89 (68.54%), Postives = 78/89 (87.64%), Query Frame = 1 

Query: 75  KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLE 134
           +RGLIA   T+L+VSSAVGDVG+++DGRSL+G C+KLGL S+L+VVTCLI+MY KF D++
Sbjct: 219 RRGLIANTLTLLSVSSAVGDVGNTMDGRSLYGHCVKLGLGSNLHVVTCLIDMYGKFGDVD 278

Query: 135 SGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
               IFDEVAEKDV++WNCLIDNYA+NG+
Sbjct: 279 EAGKIFDEVAEKDVILWNCLIDNYAKNGL 307

[Close]
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|802566482|ref|XP_012067617.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas])

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1 

Query: 59  VPFTLSKLLASAILDIKRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLN 118
           +PF  +KL        + GL   A T+L+V SA  DVG  + G S+HG  IK G CS+LN
Sbjct: 199 LPFETTKLFRQMF---RSGLQVSATTLLSVLSAFADVGDPIGGMSIHGHSIKTGFCSNLN 258

Query: 119 VVTCLINMYAKFKDLESGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
           VVTCLI MY K  D++SG+ IFD V EKDV++WNC+ID YA+ G+
Sbjct: 259 VVTCLIEMYTKTGDIDSGRRIFDGVVEKDVILWNCMIDKYAKAGL 300

[Close]
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|590700341|ref|XP_007046138.1| (Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 107.1 bits (266), Expect = 4.0e-20
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 

Query: 78  LIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQ 137
           L A   T LTV SAVG+ G SL G+SLHG C+K+G C D N+V+ LI+MYAK  ++ SG+
Sbjct: 221 LTASVPTFLTVLSAVGEAGDSLGGQSLHGHCLKVGFCFDSNLVSALIDMYAKTGNVYSGR 280

Query: 138 LIFDEVAEKDVVVWNCLIDNYARNGI 164
            +FDEVA KDVV+WNC+I  YA NG+
Sbjct: 281 RVFDEVAVKDVVLWNCMISKYAENGL 306

[Close]
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match: gi|645229831|ref|XP_008221644.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Prunus mume])

HSP 1 Score: 105.9 bits (263), Expect = 8.8e-20
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 1 

Query: 75  KRGLIAGANTVLTVSSAVGDVGHSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLE 134
           + G  A   TVL + SA+GD+G  L G SLHG CIK+G CSDL+V+T LI+M+AK   ++
Sbjct: 196 RSGFEASVTTVLNLLSAIGDLGSYLGGESLHGYCIKIGFCSDLHVLTALIDMHAKNGQID 255

Query: 135 SGQLIFDEVAEKDVVVWNCLIDNYARNGI 164
            G+ IFD VA KDVV+WNCL+D YA+ G+
Sbjct: 256 LGRRIFDGVAVKDVVLWNCLVDKYAKCGL 284

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g02020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR60_ARATH2.5e-1435.71Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidop... [more]
PP223_ARATH4.0e-1246.27Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis th... [more]
PP220_ARATH1.1e-0937.65Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop... [more]
PP350_ARATH2.4e-0939.71Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidop... [more]
PP245_ARATH2.4e-0932.46Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG09g02020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL36_CUCSA1.6e-2869.66Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168810 PE=4 SV=1[more]
A0A067L1U6_JATCU1.9e-2151.43Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15585 PE=4 SV=1[more]
A0A061EAE1_THECC2.8e-2058.14Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao ... [more]
M5XBM9_PRUPE8.1e-2055.06Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003920mg PE=4 SV=1[more]
K4ATP6_SOLLC3.1e-1949.00Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Cp4.1LG09g02020 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26900.11.4e-1535.71 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G11460.12.2e-1346.27 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G09040.16.1e-1137.65 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G35130.11.4e-1039.71 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G21470.11.4e-1032.46 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of Cp4.1LG09g02020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451962|ref|XP_004143729.1|2.3e-2869.66PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial ... [more]
gi|659073222|ref|XP_008467317.1|4.0e-2868.54PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial ... [more]
gi|802566482|ref|XP_012067617.1|2.8e-2151.43PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial ... [more]
gi|590700341|ref|XP_007046138.1|4.0e-2058.14Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao][more]
gi|645229831|ref|XP_008221644.1|8.8e-2055.06PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g02020.1Cp4.1LG09g02020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 75..163
score: 4.1
NoneNo IPR availablePANTHERPTHR24015:SF480SUBFAMILY NOT NAMEDcoord: 75..163
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g02020CsaV3_1G002450Cucumber (Chinese Long) v3cpecucB0027
Cp4.1LG09g02020Carg17290Silver-seed gourdcarcpeB0146
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g02020Silver-seed gourdcarcpeB0067
Cp4.1LG09g02020Silver-seed gourdcarcpeB0342
Cp4.1LG09g02020Silver-seed gourdcarcpeB0364
Cp4.1LG09g02020Cucumber (Chinese Long) v3cpecucB0020
Cp4.1LG09g02020Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g02020Cucumber (Chinese Long) v3cpecucB0047
Cp4.1LG09g02020Wax gourdcpewgoB0023
Cp4.1LG09g02020Wax gourdcpewgoB0051
Cp4.1LG09g02020Wax gourdcpewgoB0058
Cp4.1LG09g02020Wax gourdcpewgoB0062
Cp4.1LG09g02020Cucurbita pepo (Zucchini)cpecpeB031
Cp4.1LG09g02020Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG09g02020Cucurbita pepo (Zucchini)cpecpeB054
Cp4.1LG09g02020Cucumber (Gy14) v1cgycpeB0248
Cp4.1LG09g02020Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g02020Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g02020Cucurbita maxima (Rimu)cmacpeB458
Cp4.1LG09g02020Cucurbita maxima (Rimu)cmacpeB695
Cp4.1LG09g02020Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g02020Cucurbita moschata (Rifu)cmocpeB647
Cp4.1LG09g02020Wild cucumber (PI 183967)cpecpiB018
Cp4.1LG09g02020Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g02020Wild cucumber (PI 183967)cpecpiB039
Cp4.1LG09g02020Cucumber (Chinese Long) v2cpecuB026
Cp4.1LG09g02020Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g02020Cucumber (Chinese Long) v2cpecuB044
Cp4.1LG09g02020Bottle gourd (USVL1VR-Ls)cpelsiB024
Cp4.1LG09g02020Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g02020Watermelon (Charleston Gray)cpewcgB040
Cp4.1LG09g02020Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g02020Watermelon (97103) v1cpewmB031
Cp4.1LG09g02020Watermelon (97103) v1cpewmB051
Cp4.1LG09g02020Melon (DHL92) v3.5.1cpemeB019
Cp4.1LG09g02020Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g02020Melon (DHL92) v3.5.1cpemeB029
Cp4.1LG09g02020Cucumber (Gy14) v2cgybcpeB009
Cp4.1LG09g02020Cucumber (Gy14) v2cgybcpeB014
Cp4.1LG09g02020Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g02020Cucumber (Gy14) v2cgybcpeB585
Cp4.1LG09g02020Melon (DHL92) v3.6.1cpemedB021
Cp4.1LG09g02020Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g02020Melon (DHL92) v3.6.1cpemedB034
Cp4.1LG09g02020Melon (DHL92) v3.6.1cpemedB039