Cp4.1LG09g01610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g01610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor
LocationCp4.1LG09 : 967519 .. 967903 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCATAATGTCGTCCAGAAGCTCGCGTTCTAGGCGCTCATCTGTGCCTTCTAGCAACATTTCTGATGAACAAATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGCCCGTTCCTCCTCCAGGGTATCTCTGTTTTTCTACACTCTGTTCATGTTTATTTCAGAAATGGGTTACACCCACGATCTCATTCTTCTTAATTTGTGGGGTTTTATAGGTATCAGCTTCAAAGGTTCTTCAAGAGACCTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGGCGACTTAAGCGACCGATTATCAGAGCTGTTGCTATCAACTGACCCTGAAAGTGCTCAGGCTGCCATTATTAGAAGCTTACTCATGTAA

mRNA sequence

ACCATAATGTCGTCCAGAAGCTCGCGTTCTAGGCGCTCATCTGTGCCTTCTAGCAACATTTCTGATGAACAAATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGCCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTTCAAGAGACCTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGGCGACTTAAGCGACCGATTATCAGAGCTGTTGCTATCAACTGACCCTGAAAGTGCTCAGGCTGCCATTATTAGAAGCTTACTCATGTAA

Coding sequence (CDS)

ACCATAATGTCGTCCAGAAGCTCGCGTTCTAGGCGCTCATCTGTGCCTTCTAGCAACATTTCTGATGAACAAATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGCCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTTCAAGAGACCTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGGCGACTTAAGCGACCGATTATCAGAGCTGTTGCTATCAACTGACCCTGAAAGTGCTCAGGCTGCCATTATTAGAAGCTTACTCATGTAA

Protein sequence

TIMSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM
Homology
[Close]
BLAST of Cp4.1LG09g01610 vs. Swiss-Prot
Match: PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.4e-25
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 1 

Query: 4  SSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRS 63
          S RSSRSR+S   SS ISD+QI+DL+SKLQ LIPE+R  RS  +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRRRRSD-KVSASKVLQETCNYIRN 62

Query: 64 LQREVGDLSDRLSELLLSTDPESAQAAIIRSLL 97
          L REV DLSDRLSELL STD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]
BLAST of Cp4.1LG09g01610 vs. Swiss-Prot
Match: ILI6_ORYSJ (Transcription factor ILI6 OS=Oryza sativa subsp. japonica GN=ILI6 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR+S   SS I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          SL +EV DLS+RLSELL ++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]
BLAST of Cp4.1LG09g01610 vs. Swiss-Prot
Match: ILI6_ORYSI (Transcription factor ILI6 OS=Oryza sativa subsp. indica GN=ILI6 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR+S   SS I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          SL +EV DLS+RLSELL ++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]
BLAST of Cp4.1LG09g01610 vs. Swiss-Prot
Match: PRE2_ARATH (Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-23
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 7  SSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQR 66
          SSR  R +  SS ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 67 EVGDLSDRLSELLLSTDPESAQAAIIRSLL 97
          E  DLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]
BLAST of Cp4.1LG09g01610 vs. Swiss-Prot
Match: PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-22
Identity = 62/94 (65.96%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MS R SRSR+SS  +S IS++QI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSS-GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLL 97
          +L REV DLS+RLSELL ++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]
BLAST of Cp4.1LG09g01610 vs. TrEMBL
Match: A0A0A0KQJ7_CUCSA (Transcription regulator OS=Cucumis sativus GN=Csa_5G604940 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-34
Identity = 88/95 (92.63%), Postives = 88/95 (92.63%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]
BLAST of Cp4.1LG09g01610 vs. TrEMBL
Match: B9S289_RICCO (Transcription regulator, putative OS=Ricinus communis GN=RCOM_0697210 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR+S V  S ISD+QI DL+SKLQQLIPEIRN RS  +VSASKVLQETCNYI+
Sbjct: 1  MSSRRSRSRQSGV--SRISDDQIIDLVSKLQQLIPEIRNRRSD-KVSASKVLQETCNYIK 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          SL REV DLSDRLSELL STD +SAQAAIIRSL M
Sbjct: 61 SLHREVDDLSDRLSELLASTDSDSAQAAIIRSLFM 92

[Close]
BLAST of Cp4.1LG09g01610 vs. TrEMBL
Match: M5XQD9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016030mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 74/95 (77.89%), Postives = 80/95 (84.21%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          M  RSSRSR+S   S NISDEQI DL+SKLQQL+PEIRN RS  +VSASKVLQETCNYIR
Sbjct: 1  MGLRSSRSRQSGT-SRNISDEQITDLVSKLQQLLPEIRNRRSD-KVSASKVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          +L REV DLSDRLSELL STD +S QAAIIRSLLM
Sbjct: 61 NLHREVDDLSDRLSELLASTDMDSDQAAIIRSLLM 93

[Close]
BLAST of Cp4.1LG09g01610 vs. TrEMBL
Match: A0A022Q496_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017116mg PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.4e-25
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR+S   +S ISD+QIADL+SKLQQLIPEIRN RS  +VS SKVLQETCNYI+
Sbjct: 1  MSSRRSRSRQSG--ASRISDDQIADLVSKLQQLIPEIRNRRSD-KVSGSKVLQETCNYIK 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          +L REV DLSDRLSELL STD  SAQAAIIRSLLM
Sbjct: 61 NLHREVDDLSDRLSELLESTDSNSAQAAIIRSLLM 92

[Close]
BLAST of Cp4.1LG09g01610 vs. TrEMBL
Match: A5BU53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02030 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 74/95 (77.89%), Postives = 80/95 (84.21%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR+  V  S ISD+QIADL+SKLQQLIPEIRN RS  +VSASKVLQETCNYIR
Sbjct: 1  MSSRRSRSRQPGV--SRISDDQIADLVSKLQQLIPEIRNRRSD-KVSASKVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          +L REV DLSDRLS LL STD +S QAAIIRSLLM
Sbjct: 61 NLHREVDDLSDRLSALLASTDTDSDQAAIIRSLLM 92

[Close]
BLAST of Cp4.1LG09g01610 vs. TAIR10
Match: AT1G26945.1 (AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-26
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 1 

Query: 4  SSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRS 63
          S RSSRSR+S   SS ISD+QI+DL+SKLQ LIPE+R  RS  +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRRRRSD-KVSASKVLQETCNYIRN 62

Query: 64 LQREVGDLSDRLSELLLSTDPESAQAAIIRSLL 97
          L REV DLSDRLSELL STD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]
BLAST of Cp4.1LG09g01610 vs. TAIR10
Match: AT5G15160.1 (AT5G15160.1 BANQUO 2)

HSP 1 Score: 108.2 bits (269), Expect = 2.8e-24
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 7  SSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQR 66
          SSR  R +  SS ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 67 EVGDLSDRLSELLLSTDPESAQAAIIRSLL 97
          E  DLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]
BLAST of Cp4.1LG09g01610 vs. TAIR10
Match: AT1G74500.1 (AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 104.0 bits (258), Expect = 5.3e-23
Identity = 62/94 (65.96%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MS R SRSR+SS  +S IS++QI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSS-GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLL 97
          +L REV DLS+RLSELL ++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]
BLAST of Cp4.1LG09g01610 vs. TAIR10
Match: AT3G28857.1 (AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 103.2 bits (256), Expect = 9.1e-23
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 1 

Query: 7  SSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQR 66
          S+R  R +  +S ISD+Q+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L R
Sbjct: 2  SNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHR 61

Query: 67 EVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          EV +LSDRLS+LL S D +S +AA+IRSLLM
Sbjct: 62 EVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Cp4.1LG09g01610 vs. TAIR10
Match: AT3G47710.1 (AT3G47710.1 BANQUO 3)

HSP 1 Score: 100.5 bits (249), Expect = 5.9e-22
Identity = 61/95 (64.21%), Postives = 78/95 (82.11%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR++   +S I+DEQI DL+ +L +L+PE+ N R S +VSAS+VLQETC+YIR
Sbjct: 1  MSSRKSRSRQTG--ASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          +L +EV DLS+RLS+LL STD  SAQAA+IRSLLM
Sbjct: 61 NLSKEVDDLSERLSQLLESTD--SAQAALIRSLLM 91

[Close]
BLAST of Cp4.1LG09g01610 vs. NCBI nr
Match: gi|449434802|ref|XP_004135185.1| (PREDICTED: transcription factor PRE6-like [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-34
Identity = 88/95 (92.63%), Postives = 88/95 (92.63%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]
BLAST of Cp4.1LG09g01610 vs. NCBI nr
Match: gi|659091031|ref|XP_008446331.1| (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 6.3e-34
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          SLQREV DLSDRLS+LL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]
BLAST of Cp4.1LG09g01610 vs. NCBI nr
Match: gi|747049918|ref|XP_011071014.1| (PREDICTED: transcription factor PRE6-like [Sesamum indicum])

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-26
Identity = 77/95 (81.05%), Postives = 83/95 (87.37%), Query Frame = 1 

Query: 3   MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
           MSSR SRSR+S V  S ISD+QIADL+SKLQQLIPEIRN RS  +VSASKVLQETCNYIR
Sbjct: 90  MSSRRSRSRQSGV--SRISDDQIADLVSKLQQLIPEIRNRRSD-KVSASKVLQETCNYIR 149

Query: 63  SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
           +L REV DLSDRLSELL STD +SAQAAIIRSLLM
Sbjct: 150 NLHREVDDLSDRLSELLDSTDSDSAQAAIIRSLLM 181

[Close]
BLAST of Cp4.1LG09g01610 vs. NCBI nr
Match: gi|1009179433|ref|XP_015871076.1| (PREDICTED: transcription factor PRE6-like [Ziziphus jujuba])

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-26
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR+ S  SS I+D+QI DL+SKLQQLIPEIRN RS  +VSASKVLQETCNYIR
Sbjct: 1  MSSRRSRSRQQSGNSSAITDDQITDLVSKLQQLIPEIRNRRSD-KVSASKVLQETCNYIR 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          +L REV DLSDRLSELL +TD +SAQAAIIRSLLM
Sbjct: 61 NLHREVDDLSDRLSELLANTDADSAQAAIIRSLLM 94

[Close]
BLAST of Cp4.1LG09g01610 vs. NCBI nr
Match: gi|255558162|ref|XP_002520108.1| (PREDICTED: transcription factor PRE6 [Ricinus communis])

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-25
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 1 

Query: 3  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 62
          MSSR SRSR+S V  S ISD+QI DL+SKLQQLIPEIRN RS  +VSASKVLQETCNYI+
Sbjct: 1  MSSRRSRSRQSGV--SRISDDQIIDLVSKLQQLIPEIRNRRSD-KVSASKVLQETCNYIK 60

Query: 63 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 98
          SL REV DLSDRLSELL STD +SAQAAIIRSL M
Sbjct: 61 SLHREVDDLSDRLSELLASTDSDSAQAAIIRSLFM 92

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g01610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRE6_ARATH5.4e-2575.27Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1[more]
ILI6_ORYSJ1.3e-2370.53Transcription factor ILI6 OS=Oryza sativa subsp. japonica GN=ILI6 PE=1 SV=1[more]
ILI6_ORYSI1.3e-2370.53Transcription factor ILI6 OS=Oryza sativa subsp. indica GN=ILI6 PE=3 SV=1[more]
PRE2_ARATH5.0e-2367.78Transcription factor PRE2 OS=Arabidopsis thaliana GN=PRE2 PE=1 SV=1[more]
PRE3_ARATH9.5e-2265.96Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1[more]
BLAST of Cp4.1LG09g01610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQJ7_CUCSA2.0e-3492.63Transcription regulator OS=Cucumis sativus GN=Csa_5G604940 PE=4 SV=1[more]
B9S289_RICCO1.3e-2578.95Transcription regulator, putative OS=Ricinus communis GN=RCOM_0697210 PE=4 SV=1[more]
M5XQD9_PRUPE4.9e-2577.89Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016030mg PE=4 SV=1[more]
A0A022Q496_ERYGU6.4e-2577.89Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017116mg PE=4 SV=1[more]
A5BU53_VITVI1.1e-2477.89Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02030 PE=4 SV=... [more]
BLAST of Cp4.1LG09g01610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26945.13.0e-2675.27 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G15160.12.8e-2467.78 BANQUO 2[more]
AT1G74500.15.3e-2365.96 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1[more]
AT3G28857.19.1e-2362.64 basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT3G47710.15.9e-2264.21 BANQUO 3[more]
BLAST of Cp4.1LG09g01610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434802|ref|XP_004135185.1|2.8e-3492.63PREDICTED: transcription factor PRE6-like [Cucumis sativus][more]
gi|659091031|ref|XP_008446331.1|6.3e-3491.58PREDICTED: transcription factor PRE6-like [Cucumis melo][more]
gi|747049918|ref|XP_011071014.1|3.7e-2681.05PREDICTED: transcription factor PRE6-like [Sesamum indicum][more]
gi|1009179433|ref|XP_015871076.1|4.9e-2677.89PREDICTED: transcription factor PRE6-like [Ziziphus jujuba][more]
gi|255558162|ref|XP_002520108.1|1.8e-2578.95PREDICTED: transcription factor PRE6 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009416 response to light stimulus
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g01610.1Cp4.1LG09g01610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 24..68
score: 9.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 24..65
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 9..64
score: 10
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 23..84
score: 3.6
NoneNo IPR availableunknownCoilCoilcoord: 61..81
scor
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 2..97
score: 1.6
NoneNo IPR availablePANTHERPTHR12565:SF148PROTEIN BANQUO 3coord: 2..97
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g01610Cucsa.285230Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g01610CmaCh04G016450Cucurbita maxima (Rimu)cmacpeB695
Cp4.1LG09g01610CmoCh04G017240Cucurbita moschata (Rifu)cmocpeB647
Cp4.1LG09g01610Csa5G604940Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g01610MELO3C012081Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g01610ClCG05G024430Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g01610CSPI05G23570Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g01610Lsi04G004400Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g01610MELO3C017164.2Melon (DHL92) v3.6.1cpemedB039
Cp4.1LG09g01610MELO3C012081.2Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g01610MELO3C021981.2Melon (DHL92) v3.6.1cpemedB021
Cp4.1LG09g01610CsaV3_1G002240Cucumber (Chinese Long) v3cpecucB0027
Cp4.1LG09g01610CsaV3_5G037950Cucumber (Chinese Long) v3cpecucB0047
Cp4.1LG09g01610CsaV3_5G032530Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g01610CsaV3_1G005290Cucumber (Chinese Long) v3cpecucB0020
Cp4.1LG09g01610Bhi02G000239Wax gourdcpewgoB0062
Cp4.1LG09g01610Bhi07G001293Wax gourdcpewgoB0058
Cp4.1LG09g01610CsGy5G028200Cucumber (Gy14) v2cgybcpeB585
Cp4.1LG09g01610CsGy5G023120Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g01610CsGy1G002250Cucumber (Gy14) v2cgybcpeB014
Cp4.1LG09g01610Carg01713Silver-seed gourdcarcpeB1170
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g01610Cp4.1LG01g12710Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG09g01610Cp4.1LG04g15040Cucurbita pepo (Zucchini)cpecpeB054
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g01610Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g01610Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g01610Wild cucumber (PI 183967)cpecpiB039
Cp4.1LG09g01610Cucumber (Chinese Long) v2cpecuB044
Cp4.1LG09g01610Bottle gourd (USVL1VR-Ls)cpelsiB028
Cp4.1LG09g01610Watermelon (Charleston Gray)cpewcgB017
Cp4.1LG09g01610Watermelon (97103) v1cpewmB020
Cp4.1LG09g01610Watermelon (97103) v1cpewmB031
Cp4.1LG09g01610Melon (DHL92) v3.5.1cpemeB019
Cp4.1LG09g01610Silver-seed gourdcarcpeB0146
Cp4.1LG09g01610Silver-seed gourdcarcpeB0364
Cp4.1LG09g01610Silver-seed gourdcarcpeB0979
Cp4.1LG09g01610Wax gourdcpewgoB0023
Cp4.1LG09g01610Cucurbita pepo (Zucchini)cpecpeB031
Cp4.1LG09g01610Cucurbita pepo (Zucchini)cpecpeB039