Cp4.1LG09g01400 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g01400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
LocationCp4.1LG09 : 871981 .. 872448 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTATGTCACCGGATAATTACACTTTCAATTTTTTGGTTCGTACTAGCGCTCAGTTATCTGCTTGCGAAGCAGGTCGAACTGTTCATGGTGCTCTTTTCAAACATGGGTTTGAATTTGACCCACATGTTCAAAGTGGGTTGATCTTTATGTATGCTGAAATGGGTTGCTTGAATTCATGCTATCGTGTGTTTGAATCAGTTCAGAATCCGGATGTAGTTTGTCAGACGGCCATGGTGAGCGCTTGCGCCAAATGTGGGGATACTGACTATGCACGACAACTGTTCGACGAAATGCCTCAGAGAGACTCTGTATCATGGAATGCTATGATTGCTGGCTATGCACAGAGGGGGCAATCAAGGGAAGCTTTAAATCTGTTTAAGCTAATGCAAATGGATGGTGTCAAGGTCAATGAGGTGTCTATGGTTTCTGTTTTAACAGCCTGCACTCACTTGGGTGCACTAG

mRNA sequence

ATGATCGCTCAGTTATCTGCTTGCGAAGCAGGTCGAACTGTTCATGGTGCTCTTTTCAAACATGGGTTTGAATTTGACCCACATGTTCAAAGTGGGTTGATCTTTATGTATGCTGAAATGGGTTGCTTGAATTCATGCTATCGTGTGTTTGAATCAGTTCAGAATCCGGATGTAGTTTGTCAGACGGCCATGGTGAGCGCTTGCGCCAAATGTGGGGATACTGACTATGCACGACAACTGTTCGACGAAATGCCTCAGAGAGACTCTGTATCATGGAATGCTATGATTGCTGGCTATGCACAGAGGGGGCAATCAAGGGAAGCTTTAAATCTGTTTAAGCTAATGCAAATGGATGGTGTCAAGGTCAATGAGCCTGCACTCACTTGGGTGCACTAG

Coding sequence (CDS)

ATGATCGCTCAGTTATCTGCTTGCGAAGCAGGTCGAACTGTTCATGGTGCTCTTTTCAAACATGGGTTTGAATTTGACCCACATGTTCAAAGTGGGTTGATCTTTATGTATGCTGAAATGGGTTGCTTGAATTCATGCTATCGTGTGTTTGAATCAGTTCAGAATCCGGATGTAGTTTGTCAGACGGCCATGGTGAGCGCTTGCGCCAAATGTGGGGATACTGACTATGCACGACAACTGTTCGACGAAATGCCTCAGAGAGACTCTGTATCATGGAATGCTATGATTGCTGGCTATGCACAGAGGGGGCAATCAAGGGAAGCTTTAAATCTGTTTAAGCTAATGCAAATGGATGGTGTCAAGGTCAATGAGCCTGCACTCACTTGGGTGCACTAG

Protein sequence

MIAQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTAMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEPALTWVH
Homology
[Close]
BLAST of Cp4.1LG09g01400 vs. Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-41
Identity = 74/119 (62.18%), Postives = 98/119 (82.35%), Query Frame = 1 

Query: 9   EAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTAMVSAC 68
           E G  VHG   + GF+ DPHVQ+GLI +YAE+GCL+SC++VF S+  PD VC+TAMV+AC
Sbjct: 125 ETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTAC 184

Query: 69  AKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEPAL 128
           A+CGD  +AR+LF+ MP+RD ++WNAMI+GYAQ G+SREALN+F LMQ++GVKVN  A+
Sbjct: 185 ARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAM 243

[Close]
BLAST of Cp4.1LG09g01400 vs. Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-22
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 1 

Query: 4   QLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTA 63
           +L     GR +HG + K G E D  +++ ++ MY   GCL   +R+F  +   DVV   +
Sbjct: 138 RLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNS 197

Query: 64  MVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVK 122
           M+   AKCG  D A+ LFDEMPQR+ VSWN+MI+G+ + G+ ++AL++F+ MQ   VK
Sbjct: 198 MIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVK 255

[Close]
BLAST of Cp4.1LG09g01400 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.8e-22
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           A+  A + G+ +HG + K G + D +V + LI MY + G L   ++VF+   + DVV  T
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT 204

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           A++   A  G  + A++LFDE+P +D VSWNAMI+GYA+ G  +EAL LFK M    V+ 
Sbjct: 205 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 264

Query: 123 NEPALTWV 131
           +E  +  V
Sbjct: 265 DESTMVTV 272

[Close]
BLAST of Cp4.1LG09g01400 vs. Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.2e-20
Identity = 45/128 (35.16%), Postives = 75/128 (58.59%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           +++     G   H  + + GF+ D +V++ L+ MYA  G + +  R+F  +   DVV  T
Sbjct: 128 SEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWT 187

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           +MV+   KCG  + AR++FDEMP R+  +W+ MI GYA+     +A++LF+ M+ +GV  
Sbjct: 188 SMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVA 247

Query: 123 NEPALTWV 131
           NE  +  V
Sbjct: 248 NETVMVSV 255

[Close]
BLAST of Cp4.1LG09g01400 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-19
Identity = 48/117 (41.03%), Postives = 73/117 (62.39%), Query Frame = 1 

Query: 5   LSAC--EAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 64
           L +C  ++G+ +H  + K G   DP+V +GL+ +YA+ G + S  +VF+ +    +V  T
Sbjct: 137 LKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSST 196

Query: 65  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDG 120
           AM++  AK G+ + AR LFD M +RD VSWN MI GYAQ G   +AL LF+ +  +G
Sbjct: 197 AMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG 253

[Close]
BLAST of Cp4.1LG09g01400 vs. TrEMBL
Match: A0A0A0KSJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-54
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 1 

Query: 6   SACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTAMV 65
           SACEAG  VHGAL KHGFE+DPHV+SGLIFMYAEM CL+SC+RVFESVQ PD+VCQT MV
Sbjct: 45  SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMV 104

Query: 66  SACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEP 125
           SACAKCGD  +AR LFD MPQRD VSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNE 
Sbjct: 105 SACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEV 164

Query: 126 AL 128
           ++
Sbjct: 165 SM 166

[Close]
BLAST of Cp4.1LG09g01400 vs. TrEMBL
Match: M5XCT1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-47
Identity = 91/128 (71.09%), Postives = 107/128 (83.59%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           AQL A E G +VH AL K GFE DPHVQSGLIFMYAE+GCL+SC+R F  +  PD+VCQT
Sbjct: 108 AQLLARETGPSVHAALTKRGFENDPHVQSGLIFMYAELGCLHSCHRAFGEIVEPDLVCQT 167

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           AMVSACA+CGD  +AR+LFDEMPQRD ++WNAMIAGYAQ G+SREALNLF LMQM+GV+V
Sbjct: 168 AMVSACARCGDVGFARELFDEMPQRDPIAWNAMIAGYAQCGKSREALNLFHLMQMEGVRV 227

Query: 123 NEPALTWV 131
           NE ++  V
Sbjct: 228 NEVSMVSV 235

[Close]
BLAST of Cp4.1LG09g01400 vs. TrEMBL
Match: K7L9R1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 85/128 (66.41%), Postives = 107/128 (83.59%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           AQL A   G  VHGA+ KHGFE DPHVQ+GL+FMYAE+GCL+SC+ VF+    PD+V QT
Sbjct: 123 AQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQT 182

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           AM++ACAKCGD D+AR++FDEMP+RD V+WNAMIAGYAQ G+SREAL++F LMQM+GVK+
Sbjct: 183 AMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKL 242

Query: 123 NEPALTWV 131
           NE ++  V
Sbjct: 243 NEVSMVLV 250

[Close]
BLAST of Cp4.1LG09g01400 vs. TrEMBL
Match: W9R9L3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021080 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           AQLS  E G +VHGA+ K GFE DPH+QSGLIFMYAE+G L+SC+RVF  +  P VVCQT
Sbjct: 122 AQLSGSETGPSVHGAVIKQGFENDPHIQSGLIFMYAELGRLSSCHRVFGVIPEPGVVCQT 181

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           AMVSACAKCGD   AR LFDEMPQRD V+WNAMIAGYAQ G+SREAL LF +MQ+DGVKV
Sbjct: 182 AMVSACAKCGDVGLARDLFDEMPQRDHVAWNAMIAGYAQCGKSREALALFHMMQVDGVKV 241

Query: 123 NEPALTWV 131
           NE ++  V
Sbjct: 242 NEVSMVSV 249

[Close]
BLAST of Cp4.1LG09g01400 vs. TrEMBL
Match: A0A0B2PVW4_GLYSO (Putative pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_029582 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 85/128 (66.41%), Postives = 107/128 (83.59%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           AQL A   G  VHGA+ KHGFE DPHVQ+GL+FMYAE+GCL+SC+ VF+    PD+V QT
Sbjct: 99  AQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQT 158

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           AM++ACAKCGD D+AR++FDEMP+RD V+WNAMIAGYAQ G+SREAL++F LMQM+GVK+
Sbjct: 159 AMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKL 218

Query: 123 NEPALTWV 131
           NE ++  V
Sbjct: 219 NEVSMVLV 226

[Close]
BLAST of Cp4.1LG09g01400 vs. TAIR10
Match: AT5G40405.1 (AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-42
Identity = 74/119 (62.18%), Postives = 98/119 (82.35%), Query Frame = 1 

Query: 9   EAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTAMVSAC 68
           E G  VHG   + GF+ DPHVQ+GLI +YAE+GCL+SC++VF S+  PD VC+TAMV+AC
Sbjct: 125 ETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTAC 184

Query: 69  AKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEPAL 128
           A+CGD  +AR+LF+ MP+RD ++WNAMI+GYAQ G+SREALN+F LMQ++GVKVN  A+
Sbjct: 185 ARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAM 243

[Close]
BLAST of Cp4.1LG09g01400 vs. TAIR10
Match: AT2G42920.1 (AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 6.5e-24
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 1 

Query: 4   QLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTA 63
           +L     GR +HG + K G E D  +++ ++ MY   GCL   +R+F  +   DVV   +
Sbjct: 138 RLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNS 197

Query: 64  MVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVK 122
           M+   AKCG  D A+ LFDEMPQR+ VSWN+MI+G+ + G+ ++AL++F+ MQ   VK
Sbjct: 198 MIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVK 255

[Close]
BLAST of Cp4.1LG09g01400 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 5.5e-23
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           A+  A + G+ +HG + K G + D +V + LI MY + G L   ++VF+   + DVV  T
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT 204

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           A++   A  G  + A++LFDE+P +D VSWNAMI+GYA+ G  +EAL LFK M    V+ 
Sbjct: 205 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 264

Query: 123 NEPALTWV 131
           +E  +  V
Sbjct: 265 DESTMVTV 272

[Close]
BLAST of Cp4.1LG09g01400 vs. TAIR10
Match: AT5G06540.1 (AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 5.2e-21
Identity = 45/128 (35.16%), Postives = 75/128 (58.59%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           +++     G   H  + + GF+ D +V++ L+ MYA  G + +  R+F  +   DVV  T
Sbjct: 128 SEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWT 187

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           +MV+   KCG  + AR++FDEMP R+  +W+ MI GYA+     +A++LF+ M+ +GV  
Sbjct: 188 SMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVA 247

Query: 123 NEPALTWV 131
           NE  +  V
Sbjct: 248 NETVMVSV 255

[Close]
BLAST of Cp4.1LG09g01400 vs. TAIR10
Match: AT4G37380.1 (AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-20
Identity = 48/117 (41.03%), Postives = 73/117 (62.39%), Query Frame = 1 

Query: 5   LSAC--EAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 64
           L +C  ++G+ +H  + K G   DP+V +GL+ +YA+ G + S  +VF+ +    +V  T
Sbjct: 137 LKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSST 196

Query: 65  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDG 120
           AM++  AK G+ + AR LFD M +RD VSWN MI GYAQ G   +AL LF+ +  +G
Sbjct: 197 AMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG 253

[Close]
BLAST of Cp4.1LG09g01400 vs. NCBI nr
Match: gi|659090971|ref|XP_008446300.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 8.8e-55
Identity = 103/125 (82.40%), Postives = 112/125 (89.60%), Query Frame = 1 

Query: 6   SACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTAMV 65
           SACEAG  VHGAL KHGFE+DPHV+SGLIFMYAEMGCL+SC+RVFESVQ PD+VCQT MV
Sbjct: 124 SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMGCLSSCHRVFESVQKPDLVCQTTMV 183

Query: 66  SACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEP 125
           SACAKCGD  +AR LFD MPQRD VSWNAMIAGYAQRGQSREALNLFKLMQ+DGVKVNE 
Sbjct: 184 SACAKCGDIGFARNLFDSMPQRDYVSWNAMIAGYAQRGQSREALNLFKLMQVDGVKVNEV 243

Query: 126 ALTWV 131
           ++  V
Sbjct: 244 SMVSV 248

[Close]
BLAST of Cp4.1LG09g01400 vs. NCBI nr
Match: gi|449435364|ref|XP_004135465.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-54
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 1 

Query: 6   SACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTAMV 65
           SACEAG  VHGAL KHGFE+DPHV+SGLIFMYAEM CL+SC+RVFESVQ PD+VCQT MV
Sbjct: 124 SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMV 183

Query: 66  SACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEP 125
           SACAKCGD  +AR LFD MPQRD VSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNE 
Sbjct: 184 SACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEV 243

Query: 126 AL 128
           ++
Sbjct: 244 SM 245

[Close]
BLAST of Cp4.1LG09g01400 vs. NCBI nr
Match: gi|700196697|gb|KGN51874.1| (hypothetical protein Csa_5G604190 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-54
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 1 

Query: 6   SACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQTAMV 65
           SACEAG  VHGAL KHGFE+DPHV+SGLIFMYAEM CL+SC+RVFESVQ PD+VCQT MV
Sbjct: 45  SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMV 104

Query: 66  SACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEP 125
           SACAKCGD  +AR LFD MPQRD VSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNE 
Sbjct: 105 SACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEV 164

Query: 126 AL 128
           ++
Sbjct: 165 SM 166

[Close]
BLAST of Cp4.1LG09g01400 vs. NCBI nr
Match: gi|657994461|ref|XP_008389535.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica])

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 93/128 (72.66%), Postives = 106/128 (82.81%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           AQL A E G TVHG L KHGFE DPHVQSGLIFMYAE+G L+ C+RVF  +  PD+VCQT
Sbjct: 122 AQLLARETGPTVHGGLIKHGFENDPHVQSGLIFMYAELGSLDPCHRVFREIVEPDLVCQT 181

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           AMVSACA+CGD  +AR LFDEMPQRD V+WNAMIAGYAQ G+SREALNLF LMQM+GV+V
Sbjct: 182 AMVSACARCGDVGFARDLFDEMPQRDPVAWNAMIAGYAQCGKSREALNLFHLMQMEGVRV 241

Query: 123 NEPALTWV 131
           NE ++  V
Sbjct: 242 NEVSMVSV 249

[Close]
BLAST of Cp4.1LG09g01400 vs. NCBI nr
Match: gi|645229921|ref|XP_008221687.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Prunus mume])

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 92/128 (71.88%), Postives = 108/128 (84.38%), Query Frame = 1 

Query: 3   AQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVFESVQNPDVVCQT 62
           AQL A E G +VH AL K GFE DPHVQSGLIFMYAE+GCL+SC+RVF  +  PD+VCQT
Sbjct: 122 AQLLARETGPSVHAALTKRGFENDPHVQSGLIFMYAELGCLHSCHRVFGEIVEPDLVCQT 181

Query: 63  AMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 122
           AMVSACA+CGD  +AR+LFDEMPQRD ++WNAMIAGYAQ G+SREALNLF LMQM+GV+V
Sbjct: 182 AMVSACARCGDVGFARELFDEMPQRDPIAWNAMIAGYAQCGKSREALNLFHLMQMEGVRV 241

Query: 123 NEPALTWV 131
           NE ++  V
Sbjct: 242 NEVSMVSV 249

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g01400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP410_ARATH3.2e-4162.18Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th... [more]
PP200_ARATH1.2e-2241.53Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
PPR21_ARATH9.8e-2240.63Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PP367_ARATH9.2e-2035.16Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN... [more]
PP354_ARATH4.6e-1941.03Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
BLAST of Cp4.1LG09g01400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSJ7_CUCSA1.8e-5483.61Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1[more]
M5XCT1_PRUPE4.7e-4771.09Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1[more]
K7L9R1_SOYBN2.0e-4566.41Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
W9R9L3_9ROSA2.0e-4571.09Uncharacterized protein OS=Morus notabilis GN=L484_021080 PE=4 SV=1[more]
A0A0B2PVW4_GLYSO2.0e-4566.41Putative pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_... [more]
BLAST of Cp4.1LG09g01400 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G40405.11.8e-4262.18 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G42920.16.5e-2441.53 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G08070.15.5e-2340.63 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G06540.15.2e-2135.16 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G37380.12.6e-2041.03 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG09g01400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090971|ref|XP_008446300.1|8.8e-5582.40PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum... [more]
gi|449435364|ref|XP_004135465.1|2.6e-5483.61PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum... [more]
gi|700196697|gb|KGN51874.1|2.6e-5483.61hypothetical protein Csa_5G604190 [Cucumis sativus][more]
gi|657994461|ref|XP_008389535.1|1.4e-4772.66PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus... [more]
gi|645229921|ref|XP_008221687.1|2.3e-4771.88PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Prunu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g01400.1Cp4.1LG09g01400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 62..87
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 88..124
score: 1.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 90..124
score: 4.1E-9coord: 60..88
score: 7.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 57..87
score: 9.449coord: 88..122
score: 12
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..130
score: 1.9
NoneNo IPR availablePANTHERPTHR24015:SF6SUBFAMILY NOT NAMEDcoord: 3..130
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g01400Lsi04G004630Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g01400Carg17243Silver-seed gourdcarcpeB0146
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g01400Cucurbita pepo (Zucchini)cpecpeB031
Cp4.1LG09g01400Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG09g01400Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g01400Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g01400Cucurbita maxima (Rimu)cmacpeB695
Cp4.1LG09g01400Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g01400Cucurbita moschata (Rifu)cmocpeB647
Cp4.1LG09g01400Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g01400Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g01400Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g01400Watermelon (97103) v1cpewmB031
Cp4.1LG09g01400Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g01400Cucumber (Gy14) v2cgybcpeB014
Cp4.1LG09g01400Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g01400Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g01400Melon (DHL92) v3.6.1cpemedB039
Cp4.1LG09g01400Silver-seed gourdcarcpeB1170
Cp4.1LG09g01400Cucumber (Chinese Long) v3cpecucB0027
Cp4.1LG09g01400Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g01400Wax gourdcpewgoB0058
Cp4.1LG09g01400Wax gourdcpewgoB0062