Cp4.1LG09g00890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g00890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG09 : 537594 .. 539315 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGCCTGCAACTTGGAGGCCAAATTTCAGAGATATTACCGAGATGCAGCTTCGTGCAGCTCAAACAAATCCACGCTCTCCTCTTAACATCATCTATTCACCAAAGCATCCATGTTTTTTCGAGCTTTCTTCGACGAACCACCGAATTGGGGACCATGGATTACGCAAGTCTTGTGTTTTCTCATCTCAATCCCAGTTTCAGAACCGAAGTTCAATTCTGGAATGCGATGGTTAGGGGCTATGCTTTTAATGGCCCTGTCGAGAAATCTGTGTCCTTGTATGGCGAATTGCTTCAGAGAGGGCTCAAACCCCATAATTTCACCTACCCATATGTGCTAAACTCATGTGCTGATTTGGGTTGGTTCTGGGATGGGAAAAAAGTGCATTGCCGAATTATCAAGACTGGATTTTCGTTAAACTATTCTGTTTCTGATGCGCTTTTAAATTTGTATTTGAAAATTTCAGAATTTTCTGGACCTGGGGCTGTTTCTGATGGGAAGGTCTGGGATGCTCGCAAGCTGTTCGATGAAATGCGTGATAGAACTATTGAAGTTTGGAACCGAATGATCTTGGTGTATATGAGAACTGGGGATGTCTATGGTGCACGGCAGTTGTTTGATAGTATCGAAGATCGAGATGTCGTTTCATGGAATACGATGATTTCTGGTTATGTTAAAGTACGAGACATAGCGAAAGCAAGAGAGTTATTCGAACAAATGCCGGAGAAGAATATTGTGTCTTGGACTTCAATGATTGGGGCATATGCCAAAGCTGGAGATATTATTACAGCAAGAATGTTTTTCAATAAAATGCCTCAAAGAAATGTGGTGTCTTGGAATTCTATGGTTTCTAGCTACGTTCAACACAGGGATTTTCAGGAAGCACGGAATCTCTTTATCCAAATGCTATCAGAAGGCATAACTCCTGATAGGTATACTTTTGTTTCTGTTTTATCAGCTTGTTCTCATTTGGGGGATCTAGAGTTTGGGAAGTGGATACATTACTTGATTGATGATTTCTCTCAACTTGGAGTTATATCTGCAACTGCCCTTGTTGAAATGTATGCAAAATGTGGAGACATTAACAGAGCTTTTACTATTTTCATCAAAATCGGGACGAAGGACGTGTTTTGTTGGAACGTTATGCTGAAATCACTTGCCCTCCATGGAAAGGCTCAAGATGCCATTAAATTACTCTCTTTGATGCAAAAAGAAGGCTTGAAGCCAAATGACTTCACCTTTCTTGGAGCTTTGTTCGCCTGCAGCCATGGAGGCATGACAGAAGAAGGTCAAATCATATTTGATAACATGCAGAAGGAACATGGGATTAGCCCTACGATCGAACATTATGGTTGTGTCATTGATTTGCTTAGTCGAAACGGTCGATTAGAGGAAGCACTGCGTATAGTAGACCAGATGCCGTTTGAGCCTGATGTTGCAATATGGGGAGCTTTGCTGGGTGGTTGCAAGTTAAGAAGTGATTTCAAGAGAGCAGAAGAAATAGTTGAGAGAGTGAGAAAATTGAGATCAAATGAAGGTGGAATCCATGTGAGCTTGTCGAACATGTATGCATCAGTTGAGCATTGGCAAGAGGCTCTAACTGCAAGGGAAAAGATGGAAGAGGAGAATATATTAAAGAAAACTGGCCAGAGTAGTGTTATTTATGCACCCTGTGGAAGCTCAACGTTCACAAGATACTTTCAAGAGGATAATGGCTAA

mRNA sequence

ATGAATGGCCTGCAACTTGGAGGCCAAATTTCAGAGATATTACCGAGATGCAGCTTCGTGCAGCTCAAACAAATCCACGCTCTCCTCTTAACATCATCTATTCACCAAAGCATCCATGTTTTTTCGAGCTTTCTTCGACGAACCACCGAATTGGGGACCATGGATTACGCAAGTCTTGTGTTTTCTCATCTCAATCCCAGTTTCAGAACCGAAGTTCAATTCTGGAATGCGATGGTTAGGGGCTATGCTTTTAATGGCCCTGTCGAGAAATCTGTGTCCTTGTATGGCGAATTGCTTCAGAGAGGGCTCAAACCCCATAATTTCACCTACCCATATGTGCTAAACTCATGTGCTGATTTGGGTTGGTTCTGGGATGGGAAAAAAGTGCATTGCCGAATTATCAAGACTGGATTTTCGTTAAACTATTCTGTTTCTGATGCGCTTTTAAATTTGTATTTGAAAATTTCAGAATTTTCTGGACCTGGGGCTGTTTCTGATGGGAAGGTCTGGGATGCTCGCAAGCTGTTCGATGAAATGCGTGATAGAACTATTGAAGTTTGGAACCGAATGATCTTGGTGTATATGAGAACTGGGGATGTCTATGGTGCACGGCAGTTGTTTGATAGTATCGAAGATCGAGATGTCGTTTCATGGAATACGATGATTTCTGGTTATGTTAAAAGTAGTGTTATTTATGCACCCTGTGGAAGCTCAACGTTCACAAGATACTTTCAAGAGGATAATGGCTAA

Coding sequence (CDS)

ATGAATGGCCTGCAACTTGGAGGCCAAATTTCAGAGATATTACCGAGATGCAGCTTCGTGCAGCTCAAACAAATCCACGCTCTCCTCTTAACATCATCTATTCACCAAAGCATCCATGTTTTTTCGAGCTTTCTTCGACGAACCACCGAATTGGGGACCATGGATTACGCAAGTCTTGTGTTTTCTCATCTCAATCCCAGTTTCAGAACCGAAGTTCAATTCTGGAATGCGATGGTTAGGGGCTATGCTTTTAATGGCCCTGTCGAGAAATCTGTGTCCTTGTATGGCGAATTGCTTCAGAGAGGGCTCAAACCCCATAATTTCACCTACCCATATGTGCTAAACTCATGTGCTGATTTGGGTTGGTTCTGGGATGGGAAAAAAGTGCATTGCCGAATTATCAAGACTGGATTTTCGTTAAACTATTCTGTTTCTGATGCGCTTTTAAATTTGTATTTGAAAATTTCAGAATTTTCTGGACCTGGGGCTGTTTCTGATGGGAAGGTCTGGGATGCTCGCAAGCTGTTCGATGAAATGCGTGATAGAACTATTGAAGTTTGGAACCGAATGATCTTGGTGTATATGAGAACTGGGGATGTCTATGGTGCACGGCAGTTGTTTGATAGTATCGAAGATCGAGATGTCGTTTCATGGAATACGATGATTTCTGGTTATGTTAAAAGTAGTGTTATTTATGCACCCTGTGGAAGCTCAACGTTCACAAGATACTTTCAAGAGGATAATGGCTAA

Protein sequence

MNGLQLGGQISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPSFRTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKVHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVKSSVIYAPCGSSTFTRYFQEDNG
Homology
[Close]
BLAST of Cp4.1LG09g00890 vs. Swiss-Prot
Match: PPR23_ARATH (Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-29
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = 1 

Query: 21  QLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHL-NPSFRTEVQFWNAMV 80
           +L +IHA LL   +H S  + + F+     L   DYA+ VFSH+ NP+    V  +NAM+
Sbjct: 19  RLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPN----VLVFNAMI 78

Query: 81  RGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKVHCRIIKTGFS 140
           + Y+  GP  +S+S +  +  RG+    +TY  +L SC+ L     GK VH  +I+TGF 
Sbjct: 79  KCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFH 138

Query: 141 LNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMILVYMRTGD 200
               +   ++ LY            S G++ DA+K+FDEM +R + VWN MI  +  +GD
Sbjct: 139 RLGKIRIGVVELY-----------TSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGD 198

Query: 201 VYGARQLFDSIEDRDVVSWNTMISGYVK 228
           V     LF  + +R +VSWN+MIS   K
Sbjct: 199 VERGLHLFKQMSERSIVSWNSMISSLSK 211

[Close]
BLAST of Cp4.1LG09g00890 vs. Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-28
Identity = 72/214 (33.64%), Postives = 121/214 (56.54%), Query Frame = 1 

Query: 18  SFVQLKQIHALLLTSSIHQSIHVFSSFLRRT--TELGTMDYASLVFSHLN--PSFRTEVQ 77
           S  +L +IH LL+T  + +     S  L  +  +  G +DYA    S L+  P++     
Sbjct: 20  SMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYG---- 79

Query: 78  FWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKVHCRI 137
            WN ++RG++ +   EKS+S+Y ++L+ GL P + TYP+++ S + L     G  +HC +
Sbjct: 80  -WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSV 139

Query: 138 IKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMILV 197
           +K+G   +  + + L+++Y         G+  D     ARKLFDEM  + +  WN ++  
Sbjct: 140 VKSGLEWDLFICNTLIHMY---------GSFRDQA--SARKLFDEMPHKNLVTWNSILDA 199

Query: 198 YMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           Y ++GDV  AR +FD + +RDVV+W++MI GYVK
Sbjct: 200 YAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVK 217

[Close]
BLAST of Cp4.1LG09g00890 vs. Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.8e-28
Identity = 68/215 (31.63%), Postives = 118/215 (54.88%), Query Frame = 1 

Query: 14  LPRCSFV-QLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPSFRTEV 73
           LP+C+ + Q+KQ+HA ++  ++H+ +H+    +   +     + A  VF+ +       V
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQ---EPNV 85

Query: 74  QFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKVHCR 133
              N+++R +A N    ++  ++ E+ + GL   NFTYP++L +C+   W    K +H  
Sbjct: 86  HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 145

Query: 134 IIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMIL 193
           I K G S +  V +AL++ Y   S   G G      V DA KLF++M +R    WN M+ 
Sbjct: 146 IEKLGLSSDIYVPNALIDCY---SRCGGLG------VRDAMKLFEKMSERDTVSWNSMLG 205

Query: 194 VYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
             ++ G++  AR+LFD +  RD++SWNTM+ GY +
Sbjct: 206 GLVKAGELRDARRLFDEMPQRDLISWNTMLDGYAR 228

[Close]
BLAST of Cp4.1LG09g00890 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.3e-26
Identity = 67/220 (30.45%), Postives = 116/220 (52.73%), Query Frame = 1 

Query: 13  ILPRCSFVQ-LKQIHALLLTSSIHQSIHVFSSFLR---RTTELGTMDYASLVFSHLNPSF 72
           +L  C  +Q L+ IHA ++   +H + +  S  +     +     + YA  VF  +    
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQ--- 98

Query: 73  RTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKK 132
              +  WN M RG+A +     ++ LY  ++  GL P+++T+P+VL SCA    F +G++
Sbjct: 99  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 158

Query: 133 VHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWN 192
           +H  ++K G  L+  V  +L+++Y           V +G++ DA K+FD+   R +  + 
Sbjct: 159 IHGHVLKLGCDLDLYVHTSLISMY-----------VQNGRLEDAHKVFDKSPHRDVVSYT 218

Query: 193 RMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVKS 229
            +I  Y   G +  A++LFD I  +DVVSWN MISGY ++
Sbjct: 219 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244

[Close]
BLAST of Cp4.1LG09g00890 vs. Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-25
Identity = 64/205 (31.22%), Postives = 112/205 (54.63%), Query Frame = 1 

Query: 23  KQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHL-NPSFRTEVQFWNAMVRG 82
           K+I+A ++   + QS  + +  +    ++  MDYA+ +F+ + NP+    V  +N+++R 
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPN----VFLYNSIIRA 86

Query: 83  YAFNGPVEKSVSLYGELLQRGLK-PHNFTYPYVLNSCADLGWFWDGKKVHCRIIKTGFSL 142
           Y  N      + +Y +LL++  + P  FT+P++  SCA LG  + GK+VH  + K G   
Sbjct: 87  YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 146

Query: 143 NYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMILVYMRTGDV 202
           +    +AL+++Y+K  +             DA K+FDEM +R +  WN ++  Y R G +
Sbjct: 147 HVVTENALIDMYMKFDDLV-----------DAHKVFDEMYERDVISWNSLLSGYARLGQM 206

Query: 203 YGARQLFDSIEDRDVVSWNTMISGY 226
             A+ LF  + D+ +VSW  MISGY
Sbjct: 207 KKAKGLFHLMLDKTIVSWTAMISGY 216

[Close]
BLAST of Cp4.1LG09g00890 vs. TrEMBL
Match: A0A0A0L9R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182030 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.6e-96
Identity = 166/224 (74.11%), Postives = 196/224 (87.50%), Query Frame = 1 

Query: 4   LQLGGQISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSH 63
           + L  +ISE+LPRC+F QLKQIHALLLT+SIHQ+IH+ SSFLRRTTE   MDYASLVFSH
Sbjct: 3   MNLEPKISELLPRCNFPQLKQIHALLLTTSIHQNIHISSSFLRRTTEFRIMDYASLVFSH 62

Query: 64  LNPSFRTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWF 123
           L+PSF+TE+QFWNAM+RGYAFNGP  +SVSLYG+LLQRGLKPH+FTYP+VL SCADLGWF
Sbjct: 63  LSPSFKTEIQFWNAMIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWF 122

Query: 124 WDGKKVHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRT 183
           WDGKKVHCRI+KTGFSLN SVSDAL +LY+  S+F+GP   +DG   DARK+FDEM  R+
Sbjct: 123 WDGKKVHCRILKTGFSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRS 182

Query: 184 IEVWNRMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           +EVWNRMIL Y  TGDV GA++LF+++EDRD VSWNTMISGY+K
Sbjct: 183 VEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIK 226

[Close]
BLAST of Cp4.1LG09g00890 vs. TrEMBL
Match: B9R9C6_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1496390 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 116/220 (52.73%), Postives = 167/220 (75.91%), Query Frame = 1 

Query: 9   QISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPS- 68
           +IS ILP+C+F  LKQIHA ++ +S+  +I +FS FLRR+TE G+MDY+ L+FS +    
Sbjct: 8   KISHILPKCTFQHLKQIHAFIIAASLTHNIQIFSKFLRRSTEFGSMDYSHLIFSQMGHDY 67

Query: 69  FRTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGK 128
           F TE+  WN M+RGYAFNGP E+++S++ E+ QRGLKPHN+TYPYVLNSC ++G +  GK
Sbjct: 68  FITEIMLWNIMIRGYAFNGPFERAISMFDEIPQRGLKPHNYTYPYVLNSCCEMGIYEKGK 127

Query: 129 KVHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVW 188
           +VHC+IIK+GF  N++V  +L N+Y+K+  F+      + ++ DARK+FD M  R +EVW
Sbjct: 128 RVHCQIIKSGFESNFAVGHSLFNMYIKMPAFTDTVFADNYEMIDARKIFDNMCVRPVEVW 187

Query: 189 NRMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           N+M+  Y+  G+V  AR+LF+++ +RDVVSWN+MISGYVK
Sbjct: 188 NKMVSQYVSFGNVRSARELFEAMPERDVVSWNSMISGYVK 227

[Close]
BLAST of Cp4.1LG09g00890 vs. TrEMBL
Match: A0A061G1Y3_THECC (Tetratricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM_015156 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58
Identity = 109/218 (50.00%), Postives = 156/218 (71.56%), Query Frame = 1 

Query: 10  ISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPSFR 69
           IS +LP C+F QLKQIHAL++T+++ Q+ H+FS+FLRR+TE G+M Y+ L+FS +   F 
Sbjct: 4   ISNLLPHCTFNQLKQIHALIITTALCQNFHIFSTFLRRSTEFGSMVYSDLIFSKMGTPFY 63

Query: 70  TEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKV 129
           + +  WN MVRGYAFNGP+E  +S++ EL QRGL+P N+TYPYVLNSC+ LG F   + V
Sbjct: 64  SRIMPWNIMVRGYAFNGPLEDCMSVFDELPQRGLRPDNYTYPYVLNSCSQLGLFRKSQNV 123

Query: 130 HCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNR 189
           HC+I+K+GF  ++ VS++L N+YLK+        V  G+  DARK+FD+M  + ++VWN+
Sbjct: 124 HCQILKSGFESSFEVSNSLFNMYLKM---QASLEVKKGERRDARKVFDDMSVKPVQVWNQ 183

Query: 190 MILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           MI   +  G+V  A  LF S+  +DV+SWN MI GY +
Sbjct: 184 MIYQCVCNGNVSSAIDLFVSMPVKDVISWNIMILGYTR 218

[Close]
BLAST of Cp4.1LG09g00890 vs. TrEMBL
Match: U5G025_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13270g PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.3e-57
Identity = 105/219 (47.95%), Postives = 149/219 (68.04%), Query Frame = 1 

Query: 9   QISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPSF 68
           +IS+ LP+C+F  LKQIHAL++T S+ ++I +FS FLRRTTE G MDY++L+FS +    
Sbjct: 8   KISKTLPKCTFQHLKQIHALIITCSLSKNIKIFSKFLRRTTEFGRMDYSNLIFSQMGHDS 67

Query: 69  RTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKK 128
             E+  WNAM+RGYAFNGP ++ + ++ E+ QRGLKPHNFTYPYV+NSC +L W+  GK+
Sbjct: 68  SAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKR 127

Query: 129 VHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWN 188
           VHC I+K+GF  N    ++++  Y K            GKV +AR LF++M ++ +  W 
Sbjct: 128 VHCEIVKSGFESNIVSWNSMILGYAK-----------GGKVANARGLFEKMPEKNVISWT 187

Query: 189 RMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
            MI  Y  T D+  AR  F+++  R+VVSWN+MIS Y K
Sbjct: 188 SMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAK 215

[Close]
BLAST of Cp4.1LG09g00890 vs. TrEMBL
Match: M5X3W1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022784mg PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.2e-55
Identity = 108/218 (49.54%), Postives = 147/218 (67.43%), Query Frame = 1 

Query: 10  ISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPSFR 69
           +S++LP+C+F QLKQIHAL++T+ ++Q+I +FS FLRR+TE GTM+Y +L+FS L P   
Sbjct: 9   LSKVLPQCTFRQLKQIHALIVTTFLNQNIQIFSKFLRRSTEFGTMEYPNLIFSQLGPELS 68

Query: 70  TEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKV 129
            ++   NAM+RGY  NGP EK VSLY E+  RGLKPHNFTYPYVLNSC  +GW+  GK+V
Sbjct: 69  NDIMIQNAMIRGYDTNGPFEKCVSLYDEMPLRGLKPHNFTYPYVLNSCTKMGWYRKGKQV 128

Query: 130 HCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNR 189
           HC I+K GF    S +          S  SG   V D  V +AR LF+ M ++ +  W  
Sbjct: 129 HCHIVKHGFEDVVSWN----------SMVSGYAEVRD--VGNARDLFERMPEKDVVSWTL 188

Query: 190 MILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           MI VY   GD+  AR+ F+++  ++VVSWN+MIS Y +
Sbjct: 189 MIGVYANAGDLITARKFFETMPCKNVVSWNSMISSYTQ 214

[Close]
BLAST of Cp4.1LG09g00890 vs. TAIR10
Match: AT1G09190.1 (AT1G09190.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-30
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = 1 

Query: 21  QLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHL-NPSFRTEVQFWNAMV 80
           +L +IHA LL   +H S  + + F+     L   DYA+ VFSH+ NP+    V  +NAM+
Sbjct: 19  RLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPN----VLVFNAMI 78

Query: 81  RGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKVHCRIIKTGFS 140
           + Y+  GP  +S+S +  +  RG+    +TY  +L SC+ L     GK VH  +I+TGF 
Sbjct: 79  KCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFH 138

Query: 141 LNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMILVYMRTGD 200
               +   ++ LY            S G++ DA+K+FDEM +R + VWN MI  +  +GD
Sbjct: 139 RLGKIRIGVVELY-----------TSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGD 198

Query: 201 VYGARQLFDSIEDRDVVSWNTMISGYVK 228
           V     LF  + +R +VSWN+MIS   K
Sbjct: 199 VERGLHLFKQMSERSIVSWNSMISSLSK 211

[Close]
BLAST of Cp4.1LG09g00890 vs. TAIR10
Match: AT5G08305.1 (AT5G08305.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-29
Identity = 72/214 (33.64%), Postives = 121/214 (56.54%), Query Frame = 1 

Query: 18  SFVQLKQIHALLLTSSIHQSIHVFSSFLRRT--TELGTMDYASLVFSHLN--PSFRTEVQ 77
           S  +L +IH LL+T  + +     S  L  +  +  G +DYA    S L+  P++     
Sbjct: 20  SMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYG---- 79

Query: 78  FWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKVHCRI 137
            WN ++RG++ +   EKS+S+Y ++L+ GL P + TYP+++ S + L     G  +HC +
Sbjct: 80  -WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSV 139

Query: 138 IKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMILV 197
           +K+G   +  + + L+++Y         G+  D     ARKLFDEM  + +  WN ++  
Sbjct: 140 VKSGLEWDLFICNTLIHMY---------GSFRDQA--SARKLFDEMPHKNLVTWNSILDA 199

Query: 198 YMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           Y ++GDV  AR +FD + +RDVV+W++MI GYVK
Sbjct: 200 YAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVK 217

[Close]
BLAST of Cp4.1LG09g00890 vs. TAIR10
Match: AT3G29230.1 (AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-29
Identity = 68/215 (31.63%), Postives = 118/215 (54.88%), Query Frame = 1 

Query: 14  LPRCSFV-QLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPSFRTEV 73
           LP+C+ + Q+KQ+HA ++  ++H+ +H+    +   +     + A  VF+ +       V
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQ---EPNV 85

Query: 74  QFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKKVHCR 133
              N+++R +A N    ++  ++ E+ + GL   NFTYP++L +C+   W    K +H  
Sbjct: 86  HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 145

Query: 134 IIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMIL 193
           I K G S +  V +AL++ Y   S   G G      V DA KLF++M +R    WN M+ 
Sbjct: 146 IEKLGLSSDIYVPNALIDCY---SRCGGLG------VRDAMKLFEKMSERDTVSWNSMLG 205

Query: 194 VYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
             ++ G++  AR+LFD +  RD++SWNTM+ GY +
Sbjct: 206 GLVKAGELRDARRLFDEMPQRDLISWNTMLDGYAR 228

[Close]
BLAST of Cp4.1LG09g00890 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-27
Identity = 67/220 (30.45%), Postives = 116/220 (52.73%), Query Frame = 1 

Query: 13  ILPRCSFVQ-LKQIHALLLTSSIHQSIHVFSSFLR---RTTELGTMDYASLVFSHLNPSF 72
           +L  C  +Q L+ IHA ++   +H + +  S  +     +     + YA  VF  +    
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQ--- 98

Query: 73  RTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKK 132
              +  WN M RG+A +     ++ LY  ++  GL P+++T+P+VL SCA    F +G++
Sbjct: 99  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 158

Query: 133 VHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWN 192
           +H  ++K G  L+  V  +L+++Y           V +G++ DA K+FD+   R +  + 
Sbjct: 159 IHGHVLKLGCDLDLYVHTSLISMY-----------VQNGRLEDAHKVFDKSPHRDVVSYT 218

Query: 193 RMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVKS 229
            +I  Y   G +  A++LFD I  +DVVSWN MISGY ++
Sbjct: 219 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244

[Close]
BLAST of Cp4.1LG09g00890 vs. TAIR10
Match: AT2G20540.1 (AT2G20540.1 mitochondrial editing factor 21)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-26
Identity = 64/205 (31.22%), Postives = 112/205 (54.63%), Query Frame = 1 

Query: 23  KQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHL-NPSFRTEVQFWNAMVRG 82
           K+I+A ++   + QS  + +  +    ++  MDYA+ +F+ + NP+    V  +N+++R 
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPN----VFLYNSIIRA 86

Query: 83  YAFNGPVEKSVSLYGELLQRGLK-PHNFTYPYVLNSCADLGWFWDGKKVHCRIIKTGFSL 142
           Y  N      + +Y +LL++  + P  FT+P++  SCA LG  + GK+VH  + K G   
Sbjct: 87  YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 146

Query: 143 NYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWNRMILVYMRTGDV 202
           +    +AL+++Y+K  +             DA K+FDEM +R +  WN ++  Y R G +
Sbjct: 147 HVVTENALIDMYMKFDDLV-----------DAHKVFDEMYERDVISWNSLLSGYARLGQM 206

Query: 203 YGARQLFDSIEDRDVVSWNTMISGY 226
             A+ LF  + D+ +VSW  MISGY
Sbjct: 207 KKAKGLFHLMLDKTIVSWTAMISGY 216

[Close]
BLAST of Cp4.1LG09g00890 vs. NCBI nr
Match: gi|778679557|ref|XP_004140846.2| (PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like isoform X1 [Cucumis sativus])

HSP 1 Score: 360.5 bits (924), Expect = 2.3e-96
Identity = 166/224 (74.11%), Postives = 196/224 (87.50%), Query Frame = 1 

Query: 4   LQLGGQISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSH 63
           + L  +ISE+LPRC+F QLKQIHALLLT+SIHQ+IH+ SSFLRRTTE   MDYASLVFSH
Sbjct: 3   MNLEPKISELLPRCNFPQLKQIHALLLTTSIHQNIHISSSFLRRTTEFRIMDYASLVFSH 62

Query: 64  LNPSFRTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWF 123
           L+PSF+TE+QFWNAM+RGYAFNGP  +SVSLYG+LLQRGLKPH+FTYP+VL SCADLGWF
Sbjct: 63  LSPSFKTEIQFWNAMIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWF 122

Query: 124 WDGKKVHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRT 183
           WDGKKVHCRI+KTGFSLN SVSDAL +LY+  S+F+GP   +DG   DARK+FDEM  R+
Sbjct: 123 WDGKKVHCRILKTGFSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRS 182

Query: 184 IEVWNRMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           +EVWNRMIL Y  TGDV GA++LF+++EDRD VSWNTMISGY+K
Sbjct: 183 VEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIK 226

[Close]
BLAST of Cp4.1LG09g00890 vs. NCBI nr
Match: gi|700202234|gb|KGN57367.1| (hypothetical protein Csa_3G182030 [Cucumis sativus])

HSP 1 Score: 360.5 bits (924), Expect = 2.3e-96
Identity = 166/224 (74.11%), Postives = 196/224 (87.50%), Query Frame = 1 

Query: 4   LQLGGQISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSH 63
           + L  +ISE+LPRC+F QLKQIHALLLT+SIHQ+IH+ SSFLRRTTE   MDYASLVFSH
Sbjct: 3   MNLEPKISELLPRCNFPQLKQIHALLLTTSIHQNIHISSSFLRRTTEFRIMDYASLVFSH 62

Query: 64  LNPSFRTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWF 123
           L+PSF+TE+QFWNAM+RGYAFNGP  +SVSLYG+LLQRGLKPH+FTYP+VL SCADLGWF
Sbjct: 63  LSPSFKTEIQFWNAMIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWF 122

Query: 124 WDGKKVHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRT 183
           WDGKKVHCRI+KTGFSLN SVSDAL +LY+  S+F+GP   +DG   DARK+FDEM  R+
Sbjct: 123 WDGKKVHCRILKTGFSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRS 182

Query: 184 IEVWNRMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           +EVWNRMIL Y  TGDV GA++LF+++EDRD VSWNTMISGY+K
Sbjct: 183 VEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIK 226

[Close]
BLAST of Cp4.1LG09g00890 vs. NCBI nr
Match: gi|659077811|ref|XP_008439399.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis melo])

HSP 1 Score: 294.7 bits (753), Expect = 1.6e-76
Identity = 130/174 (74.71%), Postives = 153/174 (87.93%), Query Frame = 1 

Query: 54  MDYASLVFSHLNPSFRTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYV 113
           MDYA+LVFSHLNPSF+TE+QFWNAM+RGYAFNGP  +S+SLYG+LLQRGLKPH+FTYP+V
Sbjct: 1   MDYANLVFSHLNPSFKTEIQFWNAMIRGYAFNGPAHQSLSLYGDLLQRGLKPHSFTYPFV 60

Query: 114 LNSCADLGWFWDGKKVHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDAR 173
           L SCADLGWFWDGKKVHCRI+KTGFSLN SVSDAL NLY+  S+F+GP   +DG   DAR
Sbjct: 61  LKSCADLGWFWDGKKVHCRILKTGFSLNSSVSDALFNLYVNFSKFTGPKDAADGMASDAR 120

Query: 174 KLFDEMRDRTIEVWNRMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           K+FDEM  R++EVWNRMIL Y   GDV GA++LFD++EDRD VSWNTM+SGY+K
Sbjct: 121 KVFDEMCVRSVEVWNRMILRYTSAGDVSGAQKLFDTMEDRDTVSWNTMLSGYIK 174

[Close]
BLAST of Cp4.1LG09g00890 vs. NCBI nr
Match: gi|743857119|ref|XP_011030096.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Populus euphratica])

HSP 1 Score: 270.4 bits (690), Expect = 3.1e-69
Identity = 118/223 (52.91%), Postives = 168/223 (75.34%), Query Frame = 1 

Query: 9   QISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPSF 68
           +IS+ LP+C+F  LKQIHAL++T S+ ++I +FS FLRRTTE G MDY++L+FS +    
Sbjct: 8   KISKTLPKCTFQHLKQIHALIITCSLSKNIKIFSKFLRRTTEFGRMDYSNLIFSQMGHDS 67

Query: 69  RTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGKK 128
             E+  WNAM+RGYAFNGP ++ + ++ E+ QRGLKPHNFTYPYV+NSC +L W+  GK+
Sbjct: 68  SAEIVIWNAMIRGYAFNGPFQECIQMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKR 127

Query: 129 VHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVWN 188
           VHC I+K+GF  +Y+V+++L N+YLK+      G  S+ K+ DARK+FD++  R +E+WN
Sbjct: 128 VHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDDARKIFDDICVRPVELWN 187

Query: 189 RMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVKSSVI 232
           +MI  Y+  GDV  AR+LFDS+ +RDVVSWN+MI GY K+  +
Sbjct: 188 QMIGKYVNIGDVKSARELFDSMPERDVVSWNSMILGYAKAGKV 230

[Close]
BLAST of Cp4.1LG09g00890 vs. NCBI nr
Match: gi|223549916|gb|EEF51403.1| (pentatricopeptide repeat-containing protein, putative [Ricinus communis])

HSP 1 Score: 263.8 bits (673), Expect = 2.9e-67
Identity = 116/220 (52.73%), Postives = 167/220 (75.91%), Query Frame = 1 

Query: 9   QISEILPRCSFVQLKQIHALLLTSSIHQSIHVFSSFLRRTTELGTMDYASLVFSHLNPS- 68
           +IS ILP+C+F  LKQIHA ++ +S+  +I +FS FLRR+TE G+MDY+ L+FS +    
Sbjct: 8   KISHILPKCTFQHLKQIHAFIIAASLTHNIQIFSKFLRRSTEFGSMDYSHLIFSQMGHDY 67

Query: 69  FRTEVQFWNAMVRGYAFNGPVEKSVSLYGELLQRGLKPHNFTYPYVLNSCADLGWFWDGK 128
           F TE+  WN M+RGYAFNGP E+++S++ E+ QRGLKPHN+TYPYVLNSC ++G +  GK
Sbjct: 68  FITEIMLWNIMIRGYAFNGPFERAISMFDEIPQRGLKPHNYTYPYVLNSCCEMGIYEKGK 127

Query: 129 KVHCRIIKTGFSLNYSVSDALLNLYLKISEFSGPGAVSDGKVWDARKLFDEMRDRTIEVW 188
           +VHC+IIK+GF  N++V  +L N+Y+K+  F+      + ++ DARK+FD M  R +EVW
Sbjct: 128 RVHCQIIKSGFESNFAVGHSLFNMYIKMPAFTDTVFADNYEMIDARKIFDNMCVRPVEVW 187

Query: 189 NRMILVYMRTGDVYGARQLFDSIEDRDVVSWNTMISGYVK 228
           N+M+  Y+  G+V  AR+LF+++ +RDVVSWN+MISGYVK
Sbjct: 188 NKMVSQYVSFGNVRSARELFEAMPERDVVSWNSMISGYVK 227

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g00890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR23_ARATH4.1e-2936.06Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN... [more]
PP369_ARATH2.7e-2833.64Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN... [more]
PP261_ARATH7.8e-2831.63Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN... [more]
PPR21_ARATH4.3e-2630.45Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PP165_ARATH4.7e-2531.22Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG09g00890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9R7_CUCSA1.6e-9674.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182030 PE=4 SV=1[more]
B9R9C6_RICCO2.0e-6752.73Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A061G1Y3_THECC1.0e-5850.00Tetratricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM... [more]
U5G025_POPTR4.3e-5747.95Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13270g PE=4 SV=1[more]
M5X3W1_PRUPE5.2e-5549.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022784mg PE=4 SV=1[more]
BLAST of Cp4.1LG09g00890 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09190.12.3e-3036.06 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G08305.11.5e-2933.64 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G29230.14.4e-2931.63 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G08070.12.4e-2730.45 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G20540.12.7e-2631.22 mitochondrial editing factor 21[more]
BLAST of Cp4.1LG09g00890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679557|ref|XP_004140846.2|2.3e-9674.11PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like isoform X1... [more]
gi|700202234|gb|KGN57367.1|2.3e-9674.11hypothetical protein Csa_3G182030 [Cucumis sativus][more]
gi|659077811|ref|XP_008439399.1|1.6e-7674.71PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis m... [more]
gi|743857119|ref|XP_011030096.1|3.1e-6952.91PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Populus e... [more]
gi|223549916|gb|EEF51403.1|2.9e-6752.73pentatricopeptide repeat-containing protein, putative [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g00890.1Cp4.1LG09g00890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 186..214
score: 0.01coord: 164..182
score: 0.16coord: 216..228
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 74..118
score: 3.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 75..105
score: 0
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 106..140
score: 6.796coord: 71..105
score: 10.337coord: 183..217
score: 8
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 19..227
score: 3.5
NoneNo IPR availablePANTHERPTHR24015:SF907SUBFAMILY NOT NAMEDcoord: 19..227
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g00890CmaCh18G012430Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g00890CmoCh18G012660Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g00890Cla006187Watermelon (97103) v1cpewmB032
Cp4.1LG09g00890Csa3G182030Cucumber (Chinese Long) v2cpecuB039
Cp4.1LG09g00890CSPI03G16860Wild cucumber (PI 183967)cpecpiB034
Cp4.1LG09g00890Lsi05G012350Bottle gourd (USVL1VR-Ls)cpelsiB035
Cp4.1LG09g00890CsaV3_3G017030Cucumber (Chinese Long) v3cpecucB0039
Cp4.1LG09g00890Bhi01G000969Wax gourdcpewgoB0025
Cp4.1LG09g00890CsGy3G016950Cucumber (Gy14) v2cgybcpeB287
Cp4.1LG09g00890Carg22096Silver-seed gourdcarcpeB1038
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g00890Melon (DHL92) v3.6.1cpemedB050
Cp4.1LG09g00890Silver-seed gourdcarcpeB0994
Cp4.1LG09g00890Silver-seed gourdcarcpeB1373
Cp4.1LG09g00890Cucumber (Chinese Long) v3cpecucB0045
Cp4.1LG09g00890Cucurbita pepo (Zucchini)cpecpeB023
Cp4.1LG09g00890Cucurbita pepo (Zucchini)cpecpeB052
Cp4.1LG09g00890Cucurbita pepo (Zucchini)cpecpeB057
Cp4.1LG09g00890Cucumber (Gy14) v1cgycpeB0240
Cp4.1LG09g00890Cucumber (Gy14) v1cgycpeB0788
Cp4.1LG09g00890Cucurbita maxima (Rimu)cmacpeB253
Cp4.1LG09g00890Cucurbita maxima (Rimu)cmacpeB339
Cp4.1LG09g00890Cucurbita maxima (Rimu)cmacpeB598
Cp4.1LG09g00890Cucurbita moschata (Rifu)cmocpeB303
Cp4.1LG09g00890Cucurbita moschata (Rifu)cmocpeB546
Cp4.1LG09g00890Wild cucumber (PI 183967)cpecpiB040
Cp4.1LG09g00890Cucumber (Chinese Long) v2cpecuB046
Cp4.1LG09g00890Bottle gourd (USVL1VR-Ls)cpelsiB039
Cp4.1LG09g00890Watermelon (Charleston Gray)cpewcgB023
Cp4.1LG09g00890Watermelon (Charleston Gray)cpewcgB044
Cp4.1LG09g00890Watermelon (Charleston Gray)cpewcgB046
Cp4.1LG09g00890Watermelon (97103) v1cpewmB036
Cp4.1LG09g00890Melon (DHL92) v3.5.1cpemeB020
Cp4.1LG09g00890Melon (DHL92) v3.5.1cpemeB043
Cp4.1LG09g00890Cucumber (Gy14) v2cgybcpeB584