Cp4.1LG08g13760 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g13760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	WUSCHEL related homeobox 11
Location	Cp4.1LG08 : 9902855 .. 9903650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAACCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGTAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGCGGCGGCGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTATGGGTATGCATGTTGGTTCAAACCCTCATTTTATTTCACCAAAATATCCAAAAAAAACACCAAAAAAAGGGTTTTTGATGAAGACCCAATAATCAAAATGGATGGAATATAGTAAATTTAGCAACTTTTTTTGATTCAGCTTTTTGAAGAGAGTTCCAATGAATTGTTCTCCTTTTGATGATGATGTGACAGTTCTTTCTTGAGCTGCAATTTTTTTAACACTAATAACATAAAAAAACGTTTGCTTTGAATTATTTGAATTGATTCACGGGTTTGAGCATTAAATTTTGTGTAAAAATGTTTGATTTTGAAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTT

mRNA sequence

GCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAACCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGTAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGCGGCGGCGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTT

Coding sequence (CDS)

GCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAACCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGTAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGCGGCGGCGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTT

Protein sequence

ANVFYWFQNRRSRSRRRQRQLQAAATHQGGSAIHYDSGCSGGSVMNFAPSSSYLGEGGSSSSGGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYF

Homology

[Close]

BLAST of Cp4.1LG08g13760 vs. Swiss-Prot
Match: WOX11_ARATH (WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana GN=WOX11 PE=2 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 6.8e-33
Identity = 92/188 (48.94%), Postives = 108/188 (57.45%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAAT--------------------HQGGSAIHYDSGCS 60
           ANVFYWFQNRRSRSRRRQRQLQAAA                     H  GS + +  GCS
Sbjct: 76  ANVFYWFQNRRSRSRRRQRQLQAAAAAADATTNTCDQTMMVSNSLPHHSGSDLGF-GGCS 135

Query: 61  GGSVMNFAPSSSYLGEGGSSSSGGGGGGF-SMTDHMGISEI------DQPMVVTPSFCPS 120
             S   FA SSS  G G  + S  G     +M+  M   E       +    VT   CPS
Sbjct: 136 TSSNYLFASSSSSYGGGCDNQSNSGMENLLTMSGQMSYHEATHHHYQNHSSNVTSILCPS 195

Query: 121 -ATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHS 161
              SN ++Q G I +FINGVPTEV +G +DMKA FG+D VLVHSSG+P+ T+EFG  +HS
Sbjct: 196 DQNSNFQYQQGAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHS 255

[Close]

BLAST of Cp4.1LG08g13760 vs. Swiss-Prot
Match: WOX12_ARATH (WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana GN=WOX12 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 89/202 (44.06%), Postives = 107/202 (52.97%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAAT------------HQGGSAIHY--------DSG-- 60
           ANVFYWFQNRRSRSRRR RQL AA T            H    ++H         D G  
Sbjct: 64  ANVFYWFQNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMSMHQYPCSNNEIDLGFG 123

Query: 61  -CSGGSVMNFAPSSS-------YLG----EGGSSSSGGGGGGFSMTDHMGISEIDQP--- 120
            CS  S   F   SS       +LG     GG  ++ G    F M  H       Q    
Sbjct: 124 SCSNLSANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDHNHQQQHHS 183

Query: 121 ----MVVTPSFCPSATSNLEF-QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSG 161
                V+ PS      SN ++ Q G++ +FINGVP EV KGA+DMK MFGDD+VL+HSSG
Sbjct: 184 SNAASVLNPS---DQNSNSQYEQEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSG 243

[Close]

BLAST of Cp4.1LG08g13760 vs. Swiss-Prot
Match: WOX11_ORYSJ (WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica GN=WOX11 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.0e-21
Identity = 75/192 (39.06%), Postives = 98/192 (51.04%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAAT----------------------HQGGSA------ 60
           ANVFYWFQNRRSRSRRRQRQLQA A                       H G  A      
Sbjct: 65  ANVFYWFQNRRSRSRRRQRQLQAQAQAAAAAASSGSPPTASSGGLAPGHAGSPASSLGMF 124

Query: 61  IHYDSGCSGGSVMNFAPSSSYLGE--GGSSSSGGGGGGFSMTDHMGISEIDQPMVVTPSF 120
            H  +G S  S  ++  S   +G   G     GGG   F+++  MG  +       + + 
Sbjct: 125 AHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQMGYMDGGGGSSSSAAA 184

Query: 121 CPSATSNLEF--QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGI 161
                  L +  Q   + +FINGV TEVP+G +D+++MFG D +LVHS+G  +  NE+GI
Sbjct: 185 GQHQQQQLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGI 244

[Close]

BLAST of Cp4.1LG08g13760 vs. Swiss-Prot
Match: WOX6_ORYSI (WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica GN=WOX6 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.6e-20
Identity = 82/238 (34.45%), Postives = 108/238 (45.38%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATH--------------------------------- 60
           ANVFYWFQNRRSRSRRRQRQ+QAAA                                   
Sbjct: 85  ANVFYWFQNRRSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGLPPVAV 144

Query: 61  -----QGGSAIHYD--------SGCSGGSVMN-FAPSSSYLGEGG--------SSS---- 120
                 GGSA  Y+        SG +GGS +  FA  +   G GG        S+S    
Sbjct: 145 VHTMAMGGSACQYEQQASSSSSSGSTGGSSLGLFAHGAGASGAGGYLQASCGASASASSA 204

Query: 121 -----------SGGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGY------ 161
                      SGG    F+++  MG     +    +    PS+ +    Q  Y      
Sbjct: 205 LAPGLMGDVVDSGGSDDLFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQFYSCQLPA 264

[Close]

BLAST of Cp4.1LG08g13760 vs. Swiss-Prot
Match: WOX6_ORYSJ (WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. japonica GN=WOX6 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.6e-20
Identity = 82/238 (34.45%), Postives = 108/238 (45.38%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATH--------------------------------- 60
           ANVFYWFQNRRSRSRRRQRQ+QAAA                                   
Sbjct: 85  ANVFYWFQNRRSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGLPPGAV 144

Query: 61  -----QGGSAIHYD--------SGCSGGSVMN-FAPSSSYLGEGG--------SSS---- 120
                 GGSA  Y+        SG +GGS +  FA  +   G GG        S+S    
Sbjct: 145 VHTMAMGGSACQYEQQASSSSSSGSTGGSSLGLFAHGAGASGAGGYLQASCGASASASSA 204

Query: 121 -----------SGGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGY------ 161
                      SGG    F+++  MG     +    +    PS+ +    Q  Y      
Sbjct: 205 LAPGLMGDVVDSGGSDDLFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQFYSCQLPA 264

[Close]

BLAST of Cp4.1LG08g13760 vs. TrEMBL
Match: A0A0A0LC01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812740 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60
Identity = 140/185 (75.68%), Postives = 149/185 (80.54%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATHQGGS-AIHYD------SGCSGGS--VMNFAP-S 60
           ANVFYWFQNRRSRSRRRQRQLQAAATHQG + AIHYD       G +GGS  +MNFA  S
Sbjct: 67  ANVFYWFQNRRSRSRRRQRQLQAAATHQGSTGAIHYDCGNVSSGGYNGGSGGIMNFAGVS 126

Query: 61  SSYLGEGGSSSS-----------GGGGG--GFSMTDHMGISEIDQPMVVT--PSFCPSAT 120
           SSYLG G SSSS           GG GG  GFSM+ HMG SE+DQ MVVT  PSFCPS T
Sbjct: 127 SSYLGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSET 186

Query: 121 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQH 161
           SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFG++TVLVHSSGLPVLTNEFGISLH+LQH
Sbjct: 187 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQH 246

[Close]

BLAST of Cp4.1LG08g13760 vs. TrEMBL
Match: D7TL39_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g01200 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-39
Identity = 101/172 (58.72%), Postives = 115/172 (66.86%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQA-------AATHQGGSAIHYDSGCSGGSVMNFAPSSSY 60
           ANVFYWFQNRRSRSRRRQRQ+QA       A  H GG AIHY S     S   F PSSS 
Sbjct: 62  ANVFYWFQNRRSRSRRRQRQIQASLAGDRGAQAHAGG-AIHYQSNLMPPSA--FVPSSSS 121

Query: 61  LGEGGSSSSGGGGGG-----FSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIF 120
              G SSS GG         FS +  +G+ E++    VT + CPS TSNL +QSG + +F
Sbjct: 122 CLVGSSSSCGGMNDDGVDNLFSFSGQVGLQEMENSSGVTSTLCPSNTSNLHYQSGCVTVF 181

Query: 121 INGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYF 161
           INGVPTEVPKG+ DMKAMFG D VLVHSSG+PV  NEFG S+ SLQHGE+YF
Sbjct: 182 INGVPTEVPKGSFDMKAMFGQDFVLVHSSGVPVPFNEFGFSMQSLQHGESYF 230

[Close]

BLAST of Cp4.1LG08g13760 vs. TrEMBL
Match: A0A061F179_THECC (WUSCHEL related homeobox 11 OS=Theobroma cacao GN=TCM_025805 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.1e-37
Identity = 104/178 (58.43%), Postives = 115/178 (64.61%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQA--AATHQG-------GSAIHYDSGCSGGSVMN---FA 60
           ANVFYWFQNRRSRSRRRQRQLQA  A  HQ        G AI Y++  +     N   FA
Sbjct: 96  ANVFYWFQNRRSRSRRRQRQLQASLAGDHQQRNQAQVPGGAIQYENSTAAMGFANCPSFA 155

Query: 61  PSSSYLGEGGSSSSGG--GGGGF----SMTDHMGISEIDQPMVVTPSFCPSATSNLEFQS 120
            SS      GSSSS G  G  GF    SM+  MG  EI Q   VT   CPS TSNL +QS
Sbjct: 156 NSSPSSFLVGSSSSCGVMGDDGFENLLSMSGQMGFQEIGQSSSVTSVLCPSETSNLHYQS 215

Query: 121 GYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYF 161
           G+I +FINGVPTEVP+G +DMKAMFG D VLVHSSG+PV  NEFG  L SLQ GE+YF
Sbjct: 216 GFITVFINGVPTEVPRGPLDMKAMFGQDVVLVHSSGVPVPMNEFGFLLQSLQPGESYF 273

[Close]

BLAST of Cp4.1LG08g13760 vs. TrEMBL
Match: B9SI52_RICCO (Protein WUSCHEL, putative OS=Ricinus communis GN=RCOM_1320640 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 95/187 (50.80%), Postives = 118/187 (63.10%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATHQ--------GGSAIHYDSGCSGGSVMNFAPSSS 60
           ANVFYWFQNRRSRSRRRQRQ+QA    +         G AI YD G +  S + FA SSS
Sbjct: 70  ANVFYWFQNRRSRSRRRQRQMQATLAEEQRNQQAQASGGAIQYDGGST--SSLGFANSSS 129

Query: 61  YLGEG--------GSSSSG------GGGGG-----FSMTDHMGISEIDQPMVVTPSFCPS 120
           +            GSS++       GG  G     +S+ + MG  E+     ++   CP+
Sbjct: 130 FSAVSVSPPPFVVGSSTTSCGLVACGGEDGVANNLYSIPNQMGFQEMGHTSGISSILCPT 189

Query: 121 ATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSL 161
            TSNL +Q+G+I +FINGVPTEVP+G +DMKAMFG D VLVHSSG+PV TNEFG  +HSL
Sbjct: 190 ETSNLNYQTGFITVFINGVPTEVPRGPLDMKAMFGQDVVLVHSSGMPVPTNEFGFLMHSL 249

[Close]

BLAST of Cp4.1LG08g13760 vs. TrEMBL
Match: W8PIK6_POPTO (WOX11/12a OS=Populus tomentosa GN=12a PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 97/182 (53.30%), Postives = 115/182 (63.19%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAAT----------HQGGSAIHYDSGCSGGSVMNFAPS 60
           ANVFYWFQNRRSRSRRRQRQ+QA+               G AI Y  GC+       +PS
Sbjct: 69  ANVFYWFQNRRSRSRRRQRQMQASLVAGEQTNNQQAQASGGAIQY-KGCNTSIGFANSPS 128

Query: 61  -----SSYLGEGGSSSSG------GGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLE 120
                SSYLG G SSS G      GG   +S ++ M   E+DQ   VT    PS TSNL 
Sbjct: 129 FVQSPSSYLG-GSSSSYGVVDEDHGGESLYSFSNQMAFQEVDQTSGVTSILYPSETSNLH 188

Query: 121 FQS-GYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGET 161
           +Q+ G+I +FING+PTEVP+GA+DM AMFG D VLVHSSG+PV TNEFG  + SL HGE+
Sbjct: 189 YQTAGFITVFINGLPTEVPRGALDMNAMFGQDVVLVHSSGVPVPTNEFGFLMQSLHHGES 248

[Close]

BLAST of Cp4.1LG08g13760 vs. TAIR10
Match: AT3G03660.2 (AT3G03660.2 WUSCHEL related homeobox 11)

HSP 1 Score: 131.3 bits (329), Expect = 5.2e-31
Identity = 93/217 (42.86%), Postives = 110/217 (50.69%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAAT--------------------HQGGSAIHYDSGCS 60
           ANVFYWFQNRRSRSRRRQRQLQAAA                     H  GS + +  GCS
Sbjct: 76  ANVFYWFQNRRSRSRRRQRQLQAAAAAADATTNTCDQTMMVSNSLPHHSGSDLGF-GGCS 135

Query: 61  GGSVMNFAPSSS----YLGEGGS--------------SSSGGGGGGFSMTDHMGISEI-- 120
             S   F  SS     +LG   S              SSS   GGG     + G+  +  
Sbjct: 136 TSSNYLFGGSSQVPSFFLGLSSSPSSCSSSSSTSSSASSSSSYGGGCDNQSNSGMENLLT 195

Query: 121 ----------------DQPMVVTPSFCPS-ATSNLEFQSGYIIIFINGVPTEVPKGAVDM 161
                           +    VT   CPS   SN ++Q G I +FINGVPTEV +G +DM
Sbjct: 196 MSGQMSYHEATHHHYQNHSSNVTSILCPSDQNSNFQYQQGAITVFINGVPTEVTRGGIDM 255

[Close]

BLAST of Cp4.1LG08g13760 vs. TAIR10
Match: AT5G17810.1 (AT5G17810.1 WUSCHEL related homeobox 12)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-28
Identity = 89/202 (44.06%), Postives = 107/202 (52.97%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAAT------------HQGGSAIHY--------DSG-- 60
           ANVFYWFQNRRSRSRRR RQL AA T            H    ++H         D G  
Sbjct: 64  ANVFYWFQNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMSMHQYPCSNNEIDLGFG 123

Query: 61  -CSGGSVMNFAPSSS-------YLG----EGGSSSSGGGGGGFSMTDHMGISEIDQP--- 120
            CS  S   F   SS       +LG     GG  ++ G    F M  H       Q    
Sbjct: 124 SCSNLSANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDHNHQQQHHS 183

Query: 121 ----MVVTPSFCPSATSNLEF-QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSG 161
                V+ PS      SN ++ Q G++ +FINGVP EV KGA+DMK MFGDD+VL+HSSG
Sbjct: 184 SNAASVLNPS---DQNSNSQYEQEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSG 243

[Close]

BLAST of Cp4.1LG08g13760 vs. TAIR10
Match: AT2G33880.1 (AT2G33880.1 homeobox-3)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-11
Identity = 28/70 (40.00%), Postives = 49/70 (70.00%), Query Frame = 1


Query: 92  PSATSNLEFQS-GYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISL 151
           PS +  L+ Q+   I +FIN +  EV  G  +++  FG++ VL++S+G P++T+E+G++L
Sbjct: 307 PSTSDQLQVQADARIRVFINEMELEVSSGPFNVRDAFGEEVVLINSAGQPIVTDEYGVAL 366

Query: 152 HSLQHGETYF 161
           H LQHG +Y+
Sbjct: 367 HPLQHGASYY 376

[Close]

BLAST of Cp4.1LG08g13760 vs. TAIR10
Match: AT5G45980.1 (AT5G45980.1 WUSCHEL related homeobox 8)

HSP 1 Score: 61.2 bits (147), Expect = 6.6e-10
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 107 IFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYF 161
           +FIN +P EV  G  ++KA FG+D VL++S G P+LT+EFG++   LQ+G  Y+
Sbjct: 270 VFINEMPIEVVSGLFNVKAAFGNDAVLINSFGQPILTDEFGVTYQPLQNGAIYY 323

[Close]

BLAST of Cp4.1LG08g13760 vs. NCBI nr
Match: gi|659084899|ref|XP_008443132.1| (PREDICTED: WUSCHEL-related homeobox 11 isoform X1 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-60
Identity = 140/185 (75.68%), Postives = 149/185 (80.54%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATHQGGS-AIHYD------SGCSGGS--VMNFAP-S 60
           ANVFYWFQNRRSRSRRRQRQLQAAATHQG S AIHYD       G +GGS  +MNFA  S
Sbjct: 67  ANVFYWFQNRRSRSRRRQRQLQAAATHQGSSSAIHYDCGNVSSGGYNGGSGGIMNFAGVS 126

Query: 61  SSYLGEGGSSSS-----------GGGGG--GFSMTDHMGISEIDQPMVVT--PSFCPSAT 120
           SSY+G G SSSS           GG GG  GFSM+ HMG SE+DQ MVVT  PSFCPS T
Sbjct: 127 SSYIGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSET 186

Query: 121 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQH 161
           SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFG++TVLVHSSGLPVLTNEFGISLH+LQH
Sbjct: 187 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQH 246

[Close]

BLAST of Cp4.1LG08g13760 vs. NCBI nr
Match: gi|449437944|ref|XP_004136750.1| (PREDICTED: WUSCHEL-related homeobox 11 isoform X1 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-60
Identity = 140/185 (75.68%), Postives = 149/185 (80.54%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATHQGGS-AIHYD------SGCSGGS--VMNFAP-S 60
           ANVFYWFQNRRSRSRRRQRQLQAAATHQG + AIHYD       G +GGS  +MNFA  S
Sbjct: 67  ANVFYWFQNRRSRSRRRQRQLQAAATHQGSTGAIHYDCGNVSSGGYNGGSGGIMNFAGVS 126

Query: 61  SSYLGEGGSSSS-----------GGGGG--GFSMTDHMGISEIDQPMVVT--PSFCPSAT 120
           SSYLG G SSSS           GG GG  GFSM+ HMG SE+DQ MVVT  PSFCPS T
Sbjct: 127 SSYLGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSET 186

Query: 121 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQH 161
           SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFG++TVLVHSSGLPVLTNEFGISLH+LQH
Sbjct: 187 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQH 246

[Close]

BLAST of Cp4.1LG08g13760 vs. NCBI nr
Match: gi|659084901|ref|XP_008443133.1| (PREDICTED: WUSCHEL-related homeobox 11 isoform X2 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-50
Identity = 128/185 (69.19%), Postives = 137/185 (74.05%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATHQGGS-AIHYD------SGCSGGS--VMNFAP-S 60
           ANVFYWFQNRRSRSRRRQRQLQAAATHQG S AIHYD       G +GGS  +MNFA  S
Sbjct: 67  ANVFYWFQNRRSRSRRRQRQLQAAATHQGSSSAIHYDCGNVSSGGYNGGSGGIMNFAGVS 126

Query: 61  SSYLGEGGSSSS-----------GGGGG--GFSMTDHMGISEIDQPMVVT--PSFCPSAT 120
           SSY+G G SSSS           GG GG  GFSM+ HMG SE+DQ MVVT  PSFCPS T
Sbjct: 127 SSYIGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSET 186

Query: 121 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQH 161
           SNLEFQS            EVPKGAVDMKAMFG++TVLVHSSGLPVLTNEFGISLH+LQH
Sbjct: 187 SNLEFQS------------EVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQH 239

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BLAST of Cp4.1LG08g13760 vs. NCBI nr
Match: gi|778684959|ref|XP_011652132.1| (PREDICTED: WUSCHEL-related homeobox 11 isoform X2 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50
Identity = 128/185 (69.19%), Postives = 137/185 (74.05%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQAAATHQGGS-AIHYD------SGCSGGS--VMNFAP-S 60
           ANVFYWFQNRRSRSRRRQRQLQAAATHQG + AIHYD       G +GGS  +MNFA  S
Sbjct: 67  ANVFYWFQNRRSRSRRRQRQLQAAATHQGSTGAIHYDCGNVSSGGYNGGSGGIMNFAGVS 126

Query: 61  SSYLGEGGSSSS-----------GGGGG--GFSMTDHMGISEIDQPMVVT--PSFCPSAT 120
           SSYLG G SSSS           GG GG  GFSM+ HMG SE+DQ MVVT  PSFCPS T
Sbjct: 127 SSYLGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSET 186

Query: 121 SNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQH 161
           SNLEFQS            EVPKGAVDMKAMFG++TVLVHSSGLPVLTNEFGISLH+LQH
Sbjct: 187 SNLEFQS------------EVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQH 239

[Close]

BLAST of Cp4.1LG08g13760 vs. NCBI nr
Match: gi|296085887|emb|CBI31211.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-39
Identity = 101/172 (58.72%), Postives = 115/172 (66.86%), Query Frame = 1


Query: 1   ANVFYWFQNRRSRSRRRQRQLQA-------AATHQGGSAIHYDSGCSGGSVMNFAPSSSY 60
           ANVFYWFQNRRSRSRRRQRQ+QA       A  H GG AIHY S     S   F PSSS 
Sbjct: 62  ANVFYWFQNRRSRSRRRQRQIQASLAGDRGAQAHAGG-AIHYQSNLMPPSA--FVPSSSS 121

Query: 61  LGEGGSSSSGGGGGG-----FSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIF 120
              G SSS GG         FS +  +G+ E++    VT + CPS TSNL +QSG + +F
Sbjct: 122 CLVGSSSSCGGMNDDGVDNLFSFSGQVGLQEMENSSGVTSTLCPSNTSNLHYQSGCVTVF 181

Query: 121 INGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYF 161
           INGVPTEVPKG+ DMKAMFG D VLVHSSG+PV  NEFG S+ SLQHGE+YF
Sbjct: 182 INGVPTEVPKGSFDMKAMFGQDFVLVHSSGVPVPFNEFGFSMQSLQHGESYF 230

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g13760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WOX11_ARATH	6.8e-33	48.94	WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana GN=WOX11 PE=2 SV=2	[more]
WOX12_ARATH	1.6e-26	44.06	WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana GN=WOX12 PE=2 SV=1	[more]
WOX11_ORYSJ	6.0e-21	39.06	WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica GN=WOX11 PE=2 SV=1	[more]
WOX6_ORYSI	8.6e-20	34.45	WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica GN=WOX6 PE=3 SV=1	[more]
WOX6_ORYSJ	8.6e-20	34.45	WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. japonica GN=WOX6 PE=2 SV=1	[more]

BLAST of Cp4.1LG08g13760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC01_CUCSA	1.6e-60	75.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812740 PE=4 SV=1	[more]
D7TL39_VITVI	2.0e-39	58.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g01200 PE=4 SV=...	[more]
A0A061F179_THECC	4.1e-37	58.43	WUSCHEL related homeobox 11 OS=Theobroma cacao GN=TCM_025805 PE=4 SV=1	[more]
B9SI52_RICCO	7.0e-37	50.80	Protein WUSCHEL, putative OS=Ricinus communis GN=RCOM_1320640 PE=4 SV=1	[more]
W8PIK6_POPTO	1.5e-34	53.30	WOX11/12a OS=Populus tomentosa GN=12a PE=2 SV=1	[more]

BLAST of Cp4.1LG08g13760 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03660.2	5.2e-31	42.86	WUSCHEL related homeobox 11	[more]
AT5G17810.1	9.1e-28	44.06	WUSCHEL related homeobox 12	[more]
AT2G33880.1	2.7e-11	40.00	homeobox-3	[more]
AT5G45980.1	6.6e-10	48.15	WUSCHEL related homeobox 8	[more]

BLAST of Cp4.1LG08g13760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084899\|ref\|XP_008443132.1\|	1.7e-60	75.68	PREDICTED: WUSCHEL-related homeobox 11 isoform X1 [Cucumis melo]	[more]
gi\|449437944\|ref\|XP_004136750.1\|	2.2e-60	75.68	PREDICTED: WUSCHEL-related homeobox 11 isoform X1 [Cucumis sativus]	[more]
gi\|659084901\|ref\|XP_008443133.1\|	1.6e-50	69.19	PREDICTED: WUSCHEL-related homeobox 11 isoform X2 [Cucumis melo]	[more]
gi\|778684959\|ref\|XP_011652132.1\|	2.1e-50	69.19	PREDICTED: WUSCHEL-related homeobox 11 isoform X2 [Cucumis sativus]	[more]
gi\|296085887\|emb\|CBI31211.3\|	2.8e-39	58.72	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001356	Homeobox_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g13760.1	Cp4.1LG08g13760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 1..17 score: 8
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 2..24 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g13760	Cucsa.336980	Cucumber (Gy14) v1	cgycpeB0901
Cp4.1LG08g13760	CmaCh14G004540	Cucurbita maxima (Rimu)	cmacpeB297
Cp4.1LG08g13760	CmaCh06G000700	Cucurbita maxima (Rimu)	cmacpeB846
Cp4.1LG08g13760	CmoCh06G000620	Cucurbita moschata (Rifu)	cmocpeB794
Cp4.1LG08g13760	CmoCh14G004620	Cucurbita moschata (Rifu)	cmocpeB260
Cp4.1LG08g13760	Cla017497	Watermelon (97103) v1	cpewmB830
Cp4.1LG08g13760	Csa3G812740	Cucumber (Chinese Long) v2	cpecuB864
Cp4.1LG08g13760	MELO3C009677	Melon (DHL92) v3.5.1	cpemeB797
Cp4.1LG08g13760	ClCG10G017070	Watermelon (Charleston Gray)	cpewcgB767
Cp4.1LG08g13760	CSPI03G37000	Wild cucumber (PI 183967)	cpecpiB866
Cp4.1LG08g13760	Lsi03G016920	Bottle gourd (USVL1VR-Ls)	cpelsiB708
Cp4.1LG08g13760	MELO3C009677.2	Melon (DHL92) v3.6.1	cpemedB938
Cp4.1LG08g13760	CsaV3_3G039320	Cucumber (Chinese Long) v3	cpecucB1060
Cp4.1LG08g13760	Bhi11G002247	Wax gourd	cpewgoB1087
Cp4.1LG08g13760	CsGy3G034430	Cucumber (Gy14) v2	cgybcpeB457
Cp4.1LG08g13760	Carg03535	Silver-seed gourd	carcpeB0355
Cp4.1LG08g13760	Carg01252	Silver-seed gourd	carcpeB0234

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g13760	Cp4.1LG03g03730	Cucurbita pepo (Zucchini)	cpecpeB489

The following block(s) are covering this gene:

None