Cp4.1LG08g07240 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g07240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEthylene-responsive transcription factor 5
LocationCp4.1LG08 : 5699916 .. 5700977 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTGTGAATCTGGAGCAAGCTACTGCGTTGCAGAATATCAAGCTTCATCTTCTCGGCGAACTCTCTCCGTTGCCGACGAATTTGGCCTTTGATAATCTTTGCGTCTCGTCTTCGGATCGGTCGATGAGTTCCGGTGCTTCTTCTTCTTCTACCTCGAACTGTCCTCTTACAATCTCTGATTATTTCAATTCGGATGAAAATTTTGAATTCTCCTCTGATTTTATACGGTGCGAGTTGTCGATGTCGTCAAACGACGATTTCTTCGGATTCGAGATGAAACCTAACGTAATCGACCTAACCACAATGAATTCCGCGGAATCTATTGAATTCGAGACGAAACCGTTTGTTTTCAATGATTCGAGTTCTAGTTCGAGTTCGAGTTCGATTTCTCTGTATAGCAATAGTTCGTTTGAAGTTGAATCGAAGACTAATTTGATGAGTCAGGCAGCGAATTCGAATCGGAAACGAGCGAATTTGAAAATCTCGCTTCCGAATAAGACGACGCAATGGATCAATTTCGACACGGCGGAGAAGAAGAATCCGGTTGTGATACAGAGGAGTAAGGATCTTGAGGCGGAGAGGAAAGTTCACTACAGAGGCGTTCGACAGAGGCCTTGGGGAAAATTCGCGGCGGAGATTAGGGATCCGAATCGTCGTGGATCTAGAGTTTGGCTTGGAACTTTTGAGACAGCAATTGAAGCGGCGAGAGCGTACGATCGCGCTGCCTTCAAGCTTCGAGGATCGAAGGCGATTTTAAACTTTCCGTTGGAAGCGACGAACTCTTACTCGGAACCGATGGCCGCTGGAAAGCGGCAGAGGGAGGAGGAAGTGGGAGAGGTGGTTGAAGCGGTAGCGTTGAAGAAAGAGAAGGTGGAGGAGGTGAACCCGGCCTCCGTCCCCGCCGCGGACGTCGGTTACCTGAAAGATATGCCGTTAACGCCGTCAATTTGGTCGATGGTTTGGGACTGTGAAACGAAAGGAGTTTTCAATATTCCGCCGTTGTCGCCGTTATCTCCACATCCCGCGTTTGGTTTTTCACAGCTTGTAGTTGCATAA

mRNA sequence

ATGGAAACTCAAGCTACTGCGTTGCAGAATATCAAGCTTCATCTTCTCGGCGAACTCTCTCCGTTGCCGACGAATTTGGCCTTTGATAATCTTTGCGTCTCGTCTTCGGATCGGTCGATGAGTTCCGGTGCTTCTTCTTCTTCTACCTCGAACTGTCCTCTTACAATCTCTGATTATTTCAATTCGGATGAAAATTTTGAATTCTCCTCTGATTTTATACGGTGCGAGTTGTCGATGTCGTCAAACGACGATTTCTTCGGATTCGAGATGAAACCTAACGTAATCGACCTAACCACAATGAATTCCGCGGAATCTATTGAATTCGAGACGAAACCGTTTGTTTTCAATGATTCGAGTTCTAGTTCGAGTTCGAGTTCGATTTCTCTGTATAGCAATAGTTCGTTTGAAGTTGAATCGAAGACTAATTTGATGACGGTAGCGTTGAAGAAAGAGAAGGTGGAGGAGGTGAACCCGGCCTCCGTCCCCGCCGCGGACGTCGGTTACCTGAAAGATATGCCGTTAACGCCGTCAATTTGGTCGATGGTTTGGGACTGTGAAACGAAAGGAGTTTTCAATATTCCGCCGTTGTCGCCGTTATCTCCACATCCCGCGTTTGGTTTTTCACAGCTTGTAGTTGCATAA

Coding sequence (CDS)

ATGGAAACTCAAGCTACTGCGTTGCAGAATATCAAGCTTCATCTTCTCGGCGAACTCTCTCCGTTGCCGACGAATTTGGCCTTTGATAATCTTTGCGTCTCGTCTTCGGATCGGTCGATGAGTTCCGGTGCTTCTTCTTCTTCTACCTCGAACTGTCCTCTTACAATCTCTGATTATTTCAATTCGGATGAAAATTTTGAATTCTCCTCTGATTTTATACGGTGCGAGTTGTCGATGTCGTCAAACGACGATTTCTTCGGATTCGAGATGAAACCTAACGTAATCGACCTAACCACAATGAATTCCGCGGAATCTATTGAATTCGAGACGAAACCGTTTGTTTTCAATGATTCGAGTTCTAGTTCGAGTTCGAGTTCGATTTCTCTGTATAGCAATAGTTCGTTTGAAGTTGAATCGAAGACTAATTTGATGACGGTAGCGTTGAAGAAAGAGAAGGTGGAGGAGGTGAACCCGGCCTCCGTCCCCGCCGCGGACGTCGGTTACCTGAAAGATATGCCGTTAACGCCGTCAATTTGGTCGATGGTTTGGGACTGTGAAACGAAAGGAGTTTTCAATATTCCGCCGTTGTCGCCGTTATCTCCACATCCCGCGTTTGGTTTTTCACAGCTTGTAGTTGCATAA

Protein sequence

METQATALQNIKLHLLGELSPLPTNLAFDNLCVSSSDRSMSSGASSSSTSNCPLTISDYFNSDENFEFSSDFIRCELSMSSNDDFFGFEMKPNVIDLTTMNSAESIEFETKPFVFNDSSSSSSSSSISLYSNSSFEVESKTNLMTVALKKEKVEEVNPASVPAADVGYLKDMPLTPSIWSMVWDCETKGVFNIPPLSPLSPHPAFGFSQLVVA
BLAST of Cp4.1LG08g07240 vs. Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1

Query: 131 SNSSFEVESKTNLMTVALKKEKVEEVNPASVPAADVGYLKDMPLTPSIWSMVWDCET-KG 190
           +NS  +   +T    + +KKE   E     VPAA        PLTPS WS +W+ E  KG
Sbjct: 219 ANSGRKRMRETENEEIVIKKEVKREER---VPAAAA------PLTPSSWSAIWEGEDGKG 278

Query: 191 VFNIPPLSPLSPHPAFGFSQLVV 213
           +F +PPLSPLSPH A  +SQLV+
Sbjct: 279 IFEVPPLSPLSPHMA--YSQLVM 290

BLAST of Cp4.1LG08g07240 vs. TrEMBL
Match: A0A0A0L465_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G018320 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.8e-33
Identity = 96/150 (64.00%), Postives = 111/150 (74.00%), Query Frame = 1

Query: 4   QATALQNIKLHLLGELSPLPTNLAF--DNLCVSSSDRSMSSGASSSSTSNCPLTISDYFN 63
           +A AL+NIKLHLLGELSP P  L    DNLCVSSSDRS+SSG  SSSTSNC L ISD+FN
Sbjct: 8   EAVALENIKLHLLGELSPFPRILPSNDDNLCVSSSDRSVSSG--SSSTSNCVLNISDFFN 67

Query: 64  SDENFEFSSDFIRCE-LSMSSNDDFFGFEMKPNVIDLTTMNSAESIEFETKPFVFNDSSS 123
           SDE F+FSSD +  +  S+SSNDDFFGFEMKPNVIDLTT  S E +EFE KP VF D +S
Sbjct: 68  SDEIFQFSSDLMPTQSSSVSSNDDFFGFEMKPNVIDLTTPKSTELVEFEMKPRVFEDFNS 127

Query: 124 SSSSSSISLYSNSSFEVESKTNLMTVALKK 151
            +       YSNSS EVESK + +T + +K
Sbjct: 128 RTR------YSNSSIEVESKISQVTNSNRK 149

BLAST of Cp4.1LG08g07240 vs. TrEMBL
Match: A0A097LG19_9ROSA (AP2/EREBP family transcription factor-like protein 7 OS=Prunus pseudocerasus GN=ERF1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1

Query: 136 EVESKTNLMTVALKKEKVEEVNPASVPAADVGYLKDMPLTPSIWSMVWDCET----KGVF 195
           E   +   + VA+KKE++ E   A      VG++KDMPLTPS W+ +WD E+    KG+F
Sbjct: 277 EGREEVKAVAVAVKKERLTEAPEA------VGFIKDMPLTPSSWTAIWDSESMEDVKGIF 336

Query: 196 NIPPLSPLSPHPAFGFSQLVV 213
           N+PPLSPLSPHPA G+ QL+V
Sbjct: 337 NVPPLSPLSPHPAMGYPQLMV 351

BLAST of Cp4.1LG08g07240 vs. TrEMBL
Match: A0A068UAZ9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020395001 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1

Query: 146 VALKKEKVEEVNPASVPAADVGYLKDMPLTPSIWSMVWDC-ETKGVFNIPPLSPLSPHPA 205
           +  K+ K EEV+PASV   +   L   PLTPS W+ VWDC + KG+F IPPLSPLSPHP+
Sbjct: 250 IVKKEVKREEVSPASVRKGEERGLPTDPLTPSSWTAVWDCGDVKGIFEIPPLSPLSPHPS 309

Query: 206 FGFSQLVV 213
            G+SQL+V
Sbjct: 310 LGYSQLMV 317

BLAST of Cp4.1LG08g07240 vs. TrEMBL
Match: A0A0B2R939_GLYSO (Ethylene-responsive transcription factor 6 OS=Glycine soja GN=glysoja_035839 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-12
Identity = 74/227 (32.60%), Postives = 107/227 (47.14%), Query Frame = 1

Query: 4   QATALQNIKLHLLGELSPLPTNLAFDNLCVSSSDRSMSSGASSSSTSNCPLTISDYFNSD 63
           + +AL+ IKLHLLGELSPL T         +  D++  S + SS++ +  ++++ YF   
Sbjct: 6   EVSALKRIKLHLLGELSPLATPQ-------NKFDQTNPSPSESSNSESSSISLNHYF--- 65

Query: 64  ENFEFSSDFIRCELSMSSNDDFFGFEMKPNVIDLTTMNSAESIE----FETKPFVF---- 123
                 +D +  E+        F F+ KP VIDL T  +  S E    F  KP +     
Sbjct: 66  ------TDLLEPEIEFP----LFEFDSKPQVIDLETPKTLISAEKKPQFNRKPSLLIAVP 125

Query: 124 ---------NDSSSSSSSSSISLYSNSSFEVESKTNLMTV--ALKKEKVEEVNPASVPAA 183
                    N   ++  +     +       E +  +  V   +KKEK+ E         
Sbjct: 126 KKTEWIQFGNPEVAAPENQPEKKHYRGVRREEEEVVVEDVKAVVKKEKITE--------H 185

Query: 184 DVGYLKDMPLTPSIWSMVWDCETKGVFNIPPLSPLSPHPAFGFSQLV 212
           DV   + MPLTPS+W+  WD + K +FNIPPLSPLSP   FGFS LV
Sbjct: 186 DVSCFRGMPLTPSMWTGFWDSDVKDIFNIPPLSPLSP---FGFSPLV 201

BLAST of Cp4.1LG08g07240 vs. TrEMBL
Match: A0A0L9TQV8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g210000 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1

Query: 149 KKEKVEEVNPA----SVPAADVGYLKDMPLTPSIWSMVWDCETKGVFNIPPLSPLSPHPA 208
           ++E+VEEV P          +V   ++MPLTPS+W+  WD + K +FN+PPLSPLSP PA
Sbjct: 210 EEEEVEEVKPVVKKEKTTEQEVNCFREMPLTPSMWTGFWDNDVKEIFNVPPLSPLSPLPA 269

Query: 209 FGFSQLVV 213
           FGFSQL+V
Sbjct: 270 FGFSQLMV 277

BLAST of Cp4.1LG08g07240 vs. NCBI nr
Match: gi|449458980|ref|XP_004147224.1| (PREDICTED: ethylene-responsive transcription factor 6 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 6.9e-33
Identity = 96/150 (64.00%), Postives = 111/150 (74.00%), Query Frame = 1

Query: 4   QATALQNIKLHLLGELSPLPTNLAF--DNLCVSSSDRSMSSGASSSSTSNCPLTISDYFN 63
           +A AL+NIKLHLLGELSP P  L    DNLCVSSSDRS+SSG  SSSTSNC L ISD+FN
Sbjct: 8   EAVALENIKLHLLGELSPFPRILPSNDDNLCVSSSDRSVSSG--SSSTSNCVLNISDFFN 67

Query: 64  SDENFEFSSDFIRCE-LSMSSNDDFFGFEMKPNVIDLTTMNSAESIEFETKPFVFNDSSS 123
           SDE F+FSSD +  +  S+SSNDDFFGFEMKPNVIDLTT  S E +EFE KP VF D +S
Sbjct: 68  SDEIFQFSSDLMPTQSSSVSSNDDFFGFEMKPNVIDLTTPKSTELVEFEMKPRVFEDFNS 127

Query: 124 SSSSSSISLYSNSSFEVESKTNLMTVALKK 151
            +       YSNSS EVESK + +T + +K
Sbjct: 128 RTR------YSNSSIEVESKISQVTNSNRK 149

BLAST of Cp4.1LG08g07240 vs. NCBI nr
Match: gi|659095866|ref|XP_008448805.1| (PREDICTED: ethylene-responsive transcription factor 5 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 93/150 (62.00%), Postives = 107/150 (71.33%), Query Frame = 1

Query: 4   QATALQNIKLHLLGELSPLPTNLAFD--NLCVSSSDRSMSSGASSSSTSNCPLTISDYFN 63
           +A AL++IKLHLLGELSP P  L  D  NLCVSSSDR   S  SSS+++NC L ISDYFN
Sbjct: 8   EAVALESIKLHLLGELSPFPRILPSDDDNLCVSSSDRRSVSSGSSSTSNNCVLNISDYFN 67

Query: 64  SDENFEFSSDFIRCEL-SMSSNDDFFGFEMKPNVIDLTTMNSAESIEFETKPFVFNDSSS 123
           SDE FEFS D +  E  SMSSNDDFFGFEMKPNVIDLTT  S E +EFETKP VF D +S
Sbjct: 68  SDEIFEFSPDLMPTESSSMSSNDDFFGFEMKPNVIDLTTPKSTELVEFETKPRVFEDFNS 127

Query: 124 SSSSSSISLYSNSSFEVESKTNLMTVALKK 151
            +       YSNSS EVESK + +  + +K
Sbjct: 128 RTQ------YSNSSIEVESKISQVANSNRK 151

BLAST of Cp4.1LG08g07240 vs. NCBI nr
Match: gi|698876290|gb|AIU05285.1| (EREBP-like factor [Prunus pseudocerasus])

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1

Query: 136 EVESKTNLMTVALKKEKVEEVNPASVPAADVGYLKDMPLTPSIWSMVWDCET----KGVF 195
           E   +   + VA+KKE++ E   A      VG++KDMPLTPS W+ +WD E+    KG+F
Sbjct: 277 EGREEVKAVAVAVKKERLTEAPEA------VGFIKDMPLTPSSWTAIWDSESMEDVKGIF 336

Query: 196 NIPPLSPLSPHPAFGFSQLVV 213
           N+PPLSPLSPHPA G+ QL+V
Sbjct: 337 NVPPLSPLSPHPAMGYPQLMV 351

BLAST of Cp4.1LG08g07240 vs. NCBI nr
Match: gi|1009157316|ref|XP_015896698.1| (PREDICTED: ethylene-responsive transcription factor 5-like [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1

Query: 146 VALKKEKVEEVNPASVPAADVGYLKDMPLTPSIWSMVWDCETKGVFNIPPLSPLSPHPAF 205
           V +KKE++ E +        V YLKD+PLTPS W+ +WD + KGVFN+PPLSPLSP P F
Sbjct: 294 VVVKKERLTERDET------VNYLKDIPLTPSSWNTIWDSDVKGVFNVPPLSPLSPLPPF 353

Query: 206 GFSQLVV 213
           GF QL+V
Sbjct: 354 GFPQLMV 354

BLAST of Cp4.1LG08g07240 vs. NCBI nr
Match: gi|661891497|emb|CDP05379.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1

Query: 146 VALKKEKVEEVNPASVPAADVGYLKDMPLTPSIWSMVWDC-ETKGVFNIPPLSPLSPHPA 205
           +  K+ K EEV+PASV   +   L   PLTPS W+ VWDC + KG+F IPPLSPLSPHP+
Sbjct: 250 IVKKEVKREEVSPASVRKGEERGLPTDPLTPSSWTAVWDCGDVKGIFEIPPLSPLSPHPS 309

Query: 206 FGFSQLVV 213
            G+SQL+V
Sbjct: 310 LGYSQLMV 317

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ERF5_TOBAC1.5e-0644.58Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0L465_CUCSA4.8e-3364.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G018320 PE=4 SV=1[more]
A0A097LG19_9ROSA1.5e-1350.62AP2/EREBP family transcription factor-like protein 7 OS=Prunus pseudocerasus GN=... [more]
A0A068UAZ9_COFCA1.2e-1257.35Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020395001 PE=4 SV=1[more]
A0A0B2R939_GLYSO6.1e-1232.60Ethylene-responsive transcription factor 6 OS=Glycine soja GN=glysoja_035839 PE=... [more]
A0A0L9TQV8_PHAAN1.8e-1152.94Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g210000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449458980|ref|XP_004147224.1|6.9e-3364.00PREDICTED: ethylene-responsive transcription factor 6 [Cucumis sativus][more]
gi|659095866|ref|XP_008448805.1|4.5e-3262.00PREDICTED: ethylene-responsive transcription factor 5 [Cucumis melo][more]
gi|698876290|gb|AIU05285.1|2.1e-1350.62EREBP-like factor [Prunus pseudocerasus][more]
gi|1009157316|ref|XP_015896698.1|1.4e-1256.72PREDICTED: ethylene-responsive transcription factor 5-like [Ziziphus jujuba][more]
gi|661891497|emb|CDP05379.1|1.8e-1257.35unnamed protein product [Coffea canephora][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g07240.1Cp4.1LG08g07240.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31677FAMILY NOT NAMEDcoord: 149..212
score: 2.4
NoneNo IPR availablePANTHERPTHR31677:SF8SUBFAMILY NOT NAMEDcoord: 149..212
score: 2.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g07240Cp4.1LG14g09280Cucurbita pepo (Zucchini)cpecpeB250