Cp4.1LG08g07190 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g07190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosomal protein L19 family protein
Location	Cp4.1LG08 : 5628104 .. 5631259 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACAACCCGGTCTGACCCGACCCAGTACCGACCCGCATCATTTGAACCCGAGAGATGGTGATGGTGGTATCACAGTGGATAAGGGATCAGCTTCAAATTCTTCTTGGATGAAGAACACAACAGACACACTCTTCCTGCCATGATTCTCTCCCTTCATCTCTAATTCTGTTCCATTTCTCCACTTCAGAAGTTCCAACTCCTTCATCAATGGCCTCCAAGATTCTCCCTCAGGTACACTTCCTCCTTTCGCCTTTTCCTTTCTCTCAATTCTCCCCTTCTCTACTTCATTTTCCTTCTCAATTTTCTTCTTGTTTCTAGGCCGTGTTTTCCATTCCGAGAACCCCCAACCAATGCGCGCCGAGGAAATTAGGGTTTTGTTCCGCAATTTATGGTAACCGGCTTTCGTTTTCTACTCTTTCCTCGAGTTCAATCGGCTGCCATTTTCACCATGCCGTTGCGGGGCCGGTGAAACGGACTTTTGTTGTGAGAGCTGAGGCAAATTCTGAAGCGGAAGCGGCGGAAGAAGCTCCCGAAGTTGAAGTAGAAGGAGTAGTGGAATCTGATGCTCAGCCTGAGGAGGTGAAACCGCCGAGAAAACCTCGAGTTAAGCTTGGGGATGTAATGGGGGTAATTGTTCTATCCATTCTTGCAACTGGAAGTGTAGTTTTGTTACTGGTTCTCTTGAATTCTGTGCTTTTTAGAAGCTCATTACAGTTCAGTTTAGTATAAGATTTCAGCTATCAATGGTGAAATTTTAGATTGCAGGTGACAGTCGAACATGTGATGGGATAGTTTGAATTTGGTTTTAGTTTTGTTCATTGTTTCTCTTCTGTAGATACTTAATAAGCGGGCAGTTGAGGCATCAGAGAAGGAAAGGCCGATTCCAGACATTAGAACTGGTGATATTGTGGAAATTAAACTGGTAAATCTCATTGTTAATCTTTATAATTTAAACTCTTGTGAAGATGTAAGGTTTATCTTAACTTTCTTTTGAATAAAAATGTTATTTCCACCACAGGAAGTTCCAGAAAATAGGCGTAGGCTTTCTGTTTATAGAGGAATTGTGATATCAAAACAAAATGCTGGCATCCACACAACGATTAGAATTCGAAGAATTATTGCTGGTGTAGGTGTGGAGATTGTATTTCCACTGTAAGTATTGAGTTCATGTTGATTTCTTTCTACAATCTAATATTTGAAGTCAATAGAATATGAATGTGCTTCATTTCATTCTAACTTGCTAATATAGTCATTATGCACTACACAAAATTTTGCTTCTCTATCTTTCTATTCCCATTTCTTTTAAATAGTTGTGTTGGAACTATCTGGATTTCGCCCAAGTCCATTGCTAGCATATATTGTCCTCTTTGGGCTTTTCCTTTCGAGATTCTCCTCAAGGTTTTTAAAATGCGTTTGCTAGGGAGAGGTTTCCTCCTCAAGGTTTTTAAAATGCGTTTGCTAGGGAGAGGTTTCCACACACTTATAAAAAATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCGCTTCGCAGCCCAACGTTCTCGTTGGCACTCGTTCCTCTCTCCAATCGATGTGGGACCCCTCGATCCACCCCCTTTGGGGCCCTGCGTCCTCCCTCGCACACCGCCCGGTGTCCACCTCCATTCGGGGCTCAGCCTCCTCGCTAGCACATCGCCCGGTGCTGACTTTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTGTTGGGCTTCCCCACGCGTTTTAAAACGCGTTTGCTGGGGAGAGATTTCCACACCCTTATAAAGAATGTTTTGTTTTCCTCCCCAACCGATGTGGGATCTCACAGTTTTGAGGTCTCATAGTTCTAAAACTTGACTTATTCCCAGAATCTTTTGTTCATTTTCAACATAAAATTGAGTGTGCTTTAGAACAATCTCACGTGCTGATTTAGTAATCAAGCAAGACTAGCTTTGGTTTGAATGACTTGAGGAAACTCAAACCTTGTTACATATGTTGCTCTCAAATTCCTGTTTCCATAATAGTAAAGCCCCCCCACCAAACAAACTAAAAATAGGAAGAAGAAGAAGAATCACCACATCCATCAAAGTTAGATGAAATCAGAACACCTGCCAAAGATTTGACAGCTCCCTCTTGGCTTGCTGAAAAGTGGGCTGTGGTTGTTCGCGTAACTTATGAAATGATAAACATCCAAAATTATATCCCGAGCAACTCAAAACTTGTGCTTGAAGCTCTCGTGGGTCGCTATGCAAAGAATATGACAGTTGGATGCCTGATTGATATATTATAACCTGCTTGATTACTTGTGTGTGATTGGATCTGCAAGTATGGATTTGAGCTCATGATGAACTTCTTCTGCAGGTACTCACCAAACATCAAAGAACTTAAAGTGGTAAGCCACAGGAAGGTGAGGAGGGCAAGGTTATATTATTTGAGAGACAAACTACCAAGACTCTCTACTTTCAAGTGAAACACCCCAATGGCATCTCCTTACACTTTTCCCTTCCCTGTTTTTTCATTGAACGTGGATGTGTTGTATGTTGTTATAATTCATTTTTGTGTATTGACGCTATTCCCCTCCTTCATTAACATTTAGTAGTCTAATGATATATGAGCAGCAGGGGTGTAATGAAAGATATTGTCTTGGATTCGCTAGCTCGCACCATGTTCCCAAGCTTCTTTGCCATGCTGATGCCATTATCTTGGCTTCTTCTCAGTTGTTATATCTCCTCTTGAACTCTAAATTTATGAAGATTCTGTGGGGCATCTCGAGTTCTTTCTGCTTTGTCACAAATTAGCAATGGCTCTACCCTATAAATCTTGGAAGACAGGAAGGTTTGGGCTTTGCATCCTTATGATGTCTTTGTTGGAGGTGGGAATCGGCTAATTTAGGGAATGATCATGTGAGGAATACTAACTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCACAAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTTTACTTCTAGACCCTCCCTTTTAGTTACTTTCTATGCTCGTAGTATATACTATCTGCATCTTTTGATGAATTATGGGAAAGTTATTTTTTTTATTTTTTT

mRNA sequence

TGGACAACCCGGTCTGACCCGACCCAGTACCGACCCGCATCATTTGAACCCGAGAGATGGTGATGGTGGTATCACAGTGGATAAGGGATCAGCTTCAAATTCTTCTTGGATGAAGAACACAACAGACACACTCTTCCTGCCATGATTCTCTCCCTTCATCTCTAATTCTGTTCCATTTCTCCACTTCAGAAGTTCCAACTCCTTCATCAATGGCCTCCAAGATTCTCCCTCAGGCCGTGTTTTCCATTCCGAGAACCCCCAACCAATGCGCGCCGAGGAAATTAGGGTTTTGTTCCGCAATTTATGGTAACCGGCTTTCGTTTTCTACTCTTTCCTCGAGTTCAATCGGCTGCCATTTTCACCATGCCGTTGCGGGGCCGGTGAAACGGACTTTTGTTGTGAGAGCTGAGGCAAATTCTGAAGCGGAAGCGGCGGAAGAAGCTCCCGAAGTTGAAGTAGAAGGAGTAGTGGAATCTGATGCTCAGCCTGAGGAGGTGAAACCGCCGAGAAAACCTCGAGTTAAGCTTGGGGATGTAATGGGGATACTTAATAAGCGGGCAGTTGAGGCATCAGAGAAGGAAAGGCCGATTCCAGACATTAGAACTGGTGATATTGTGGAAATTAAACTGGAAGTTCCAGAAAATAGGCGTAGGCTTTCTGTTTATAGAGGAATTGTGATATCAAAACAAAATGCTGGCATCCACACAACGATTAGAATTCGAAGAATTATTGCTGGTGTAGGTGTGGAGATTGTATTTCCACTGTACTCACCAAACATCAAAGAACTTAAAGTGGTAAGCCACAGGAAGGTGAGGAGGGCAAGGTTATATTATTTGAGAGACAAACTACCAAGACTCTCTACTTTCAAGTGAAACACCCCAATGGCATCTCCTTACACTTTTCCCTTCCCTGTTTTTTCATTGAACGTGGATGTGTTGTATGTTGTTATAATTCATTTTTGTGTATTGACGCTATTCCCCTCCTTCATTAACATTTAGTAGTCTAATGATATATGAGCAGCAGGGGTGTAATGAAAGATATTGTCTTGGATTCGCTAGCTCGCACCATGTTCCCAAGCTTCTTTGCCATGCTGATGCCATTATCTTGGCTTCTTCTCAGTTGTTATATCTCCTCTTGAACTCTAAATTTATGAAGATTCTGTGGGGCATCTCGAGTTCTTTCTGCTTTGTCACAAATTAGCAATGGCTCTACCCTATAAATCTTGGAAGACAGGAAGGTTTGGGCTTTGCATCCTTATGATGTCTTTGTTGGAGGTGGGAATCGGCTAATTTAGGGAATGATCATGTGAGGAATACTAACTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCACAAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTTTACTTCTAGACCCTCCCTTTTAGTTACTTTCTATGCTCGTAGTATATACTATCTGCATCTTTTGATGAATTATGGGAAAGTTATTTTTTTTATTTTTTT

Coding sequence (CDS)

ATGGCCTCCAAGATTCTCCCTCAGGCCGTGTTTTCCATTCCGAGAACCCCCAACCAATGCGCGCCGAGGAAATTAGGGTTTTGTTCCGCAATTTATGGTAACCGGCTTTCGTTTTCTACTCTTTCCTCGAGTTCAATCGGCTGCCATTTTCACCATGCCGTTGCGGGGCCGGTGAAACGGACTTTTGTTGTGAGAGCTGAGGCAAATTCTGAAGCGGAAGCGGCGGAAGAAGCTCCCGAAGTTGAAGTAGAAGGAGTAGTGGAATCTGATGCTCAGCCTGAGGAGGTGAAACCGCCGAGAAAACCTCGAGTTAAGCTTGGGGATGTAATGGGGATACTTAATAAGCGGGCAGTTGAGGCATCAGAGAAGGAAAGGCCGATTCCAGACATTAGAACTGGTGATATTGTGGAAATTAAACTGGAAGTTCCAGAAAATAGGCGTAGGCTTTCTGTTTATAGAGGAATTGTGATATCAAAACAAAATGCTGGCATCCACACAACGATTAGAATTCGAAGAATTATTGCTGGTGTAGGTGTGGAGATTGTATTTCCACTGTACTCACCAAACATCAAAGAACTTAAAGTGGTAAGCCACAGGAAGGTGAGGAGGGCAAGGTTATATTATTTGAGAGACAAACTACCAAGACTCTCTACTTTCAAGTGA

Protein sequence

MASKILPQAVFSIPRTPNQCAPRKLGFCSAIYGNRLSFSTLSSSSIGCHFHHAVAGPVKRTFVVRAEANSEAEAAEEAPEVEVEGVVESDAQPEEVKPPRKPRVKLGDVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK

Homology

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BLAST of Cp4.1LG08g07190 vs. Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.4e-67
Identity = 143/222 (64.41%), Postives = 174/222 (78.38%), Query Frame = 1


Query: 6   LPQAVFSIPRTPNQCAPRKLGF-----CSAIYGNRLSFSTLSSSSIGCHFHHAVAGPVKR 65
           LPQA+  IPR P Q + + LGF     C+    +R+S S LS +  G  F  ++   V+ 
Sbjct: 8   LPQALHMIPRNPTQSS-KNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRN 67

Query: 66  TFVVRAE-ANSEAEAAEEAPEV-EVEGVVESDAQPEEVKPPRKPRVKLGDVMGILNKRAV 125
            F+VRAE  N+EAE+ E   E+ + EG VE   +  E KP RKPR+KLGDVMGILN++A+
Sbjct: 68  EFIVRAEEGNTEAESEEFVAEIADTEGNVE---EVVEAKPTRKPRIKLGDVMGILNQKAI 127

Query: 126 EASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVG 185
           E +EK RP+P+IRTGDIVEIKLEVPEN+RRLS+Y+GIV+S+QNAGIHTTIRIRRIIAG+G
Sbjct: 128 EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 187

Query: 186 VEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           VEIVFP+YSPNIKE+KVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 188 VEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225

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BLAST of Cp4.1LG08g07190 vs. Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 251.5 bits (641), Expect = 8.4e-66
Identity = 147/234 (62.82%), Postives = 177/234 (75.64%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPN-QCAPRK--LGF---------CSAIYGNRLSFSTLSSSSIGC 60
           MASK+LPQA+  IP   + QC P K  LGF          S+   + L  S  SS+    
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 61  HFHHAVAGPVKRTFVVRAEANSEAEAAEEAPEV--EVEGVVESDAQPEEVKPPRKPRVKL 120
           +F    + P + +FVVR+EA   ++A  E+  V  E E  VES+A+ EE +PPR+ RVKL
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEE-RPPRQQRVKL 120

Query: 121 GDVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHT 180
           GD+MGILNK+AV A+E+ RP+P IRTGDIV+I+LEVPEN+RRLSVY+GIVIS+QNAGIHT
Sbjct: 121 GDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHT 180

Query: 181 TIRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           TIRIRRIIAGVGVEIVFPLYSPNIKE+KVVSHRKVR+ARLYYLRDKLPRLSTFK
Sbjct: 181 TIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233

[Close]

BLAST of Cp4.1LG08g07190 vs. Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.4e-65
Identity = 136/227 (59.91%), Postives = 170/227 (74.89%), Query Frame = 1


Query: 2   ASKILPQAVFSIPRTPNQCAPRKLGFCSAI-----YGNRLSFSTLSSSSIGCHFHHAVAG 61
           +S +LPQA+  IPRTP+  + + LG  S +       +RLS S +  +    +F  A+  
Sbjct: 4   SSHLLPQALHMIPRTPS-FSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 63

Query: 62  PVKRTFVVRAEANSEAEA---AEEAPEVEVEGVVESDAQPEEVKPPRKPRVKLGDVMGIL 121
             ++ F+ +AE ++E E     E A E E EG  E+    EE KPP K RVKLGD+MG+L
Sbjct: 64  KKRKEFIAKAEESTEGETEAVVENAVETEAEGEGEATVAAEEAKPPWKTRVKLGDIMGLL 123

Query: 122 NKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRI 181
           NK+A+E +E  RP+P +RTGDIVEIKLEVPEN+RRLS+Y+GIV+S+QNAGIHTTIRIRRI
Sbjct: 124 NKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRI 183

Query: 182 IAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           IAG+GVEIVFP+YSPNIKE+KVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 184 IAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

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BLAST of Cp4.1LG08g07190 vs. Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-20
Identity = 48/106 (45.28%), Postives = 75/106 (70.75%), Query Frame = 1


Query: 116 RAVEASEKERPIPDIRTGDIVEIKLEVPE-NRRRLSVYRGIVISKQNAGIHTTIRIRRII 175
           R++EA + +  +P+I  GD V++ + + E N+ R   Y GIVI+K+N+GI+ TI +RRI 
Sbjct: 8   RSLEAEQLKSNLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIF 67

Query: 176 AGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
            GVGVE VF L+SP ++ +K++   KVRRA+LYYLRD++ + +  K
Sbjct: 68  QGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRVGKATRVK 113

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BLAST of Cp4.1LG08g07190 vs. Swiss-Prot
Match: RL19_NOSP7 (50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplS PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-19
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 116 RAVEASEKERPIPDIRTGDIVEIKLEVPENRR-RLSVYRGIVISKQNAGIHTTIRIRRII 175
           R++EA + +  +PDI  GD V++ +++ E  + R+  Y G+VI+K+N GI+ TI +R++ 
Sbjct: 8   RSIEAEQLKSNLPDIYVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVF 67

Query: 176 AGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
            GVGVE VF L+SP I  +KV+   KVRRA+LYYLRD++ + +  K
Sbjct: 68  QGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRDRVGKATRIK 113

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BLAST of Cp4.1LG08g07190 vs. TrEMBL
Match: A0A0A0L237_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017220 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 6.2e-100
Identity = 193/221 (87.33%), Postives = 205/221 (92.76%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFCSAIYGNRLSFSTLSSSSIGCHFHHAVAGPVKR 60
           MASKILPQAV SIPR PNQCAPR+LGFCSA+ G R+SFSTLSSSSIG HFHH VA P++R
Sbjct: 1   MASKILPQAVISIPRNPNQCAPRRLGFCSAVSGTRVSFSTLSSSSIGSHFHHTVAAPLRR 60

Query: 61  TFVVRAEANSEAE-AAEEAPEVEVEGVVESDAQPEEVKPPRKPRVKLGDVMGILNKRAVE 120
            FVVRAEAN EA+ AAEEAPE EVE  VESDAQPEE KP RKPRVKLGDVMGILNKRA+E
Sbjct: 61  AFVVRAEANPEADSAAEEAPEAEVEAAVESDAQPEEEKPSRKPRVKLGDVMGILNKRAIE 120

Query: 121 ASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV 180
           ASEKERPIPDIRTGDIVE+KLEV ENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV
Sbjct: 121 ASEKERPIPDIRTGDIVELKLEVQENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV 180

Query: 181 EIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           EIVFPLYSPNI+E++VVSHRKVRRARLYYLRDKLP+LSTFK
Sbjct: 181 EIVFPLYSPNIREIRVVSHRKVRRARLYYLRDKLPKLSTFK 221

[Close]

BLAST of Cp4.1LG08g07190 vs. TrEMBL
Match: D7U6T6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0616g00020 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.6e-76
Identity = 162/233 (69.53%), Postives = 185/233 (79.40%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFC-------SAIYGNRLSFSTLSSSSIGCHFHHA 60
           MASK+LPQA+F  PR+ NQ  P+KLG         S++  NRLS S  SS+S   HF   
Sbjct: 1   MASKVLPQALFITPRSSNQWPPKKLGLSTFPSPRSSSLNLNRLSTSRFSSNSFAFHFRPI 60

Query: 61  VAGPVKRTFVVRAEANSEAEAA------EEAPEVEVEGVVESDAQPEEVKPPRKPRVKLG 120
           V  P KR F+VRAEA++E E        EE    E E  V+ DA+ +E KPPRKPRVKLG
Sbjct: 61  VVSP-KRFFIVRAEADNEGELGADENTEEEETVSETESEVKLDAE-DEAKPPRKPRVKLG 120

Query: 121 DVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTT 180
           D+MGILNKRA+EASEKERP+PD+RTGDIVEIKLEVPENRRRLS+Y+GIVISKQNAGIHTT
Sbjct: 121 DIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIYKGIVISKQNAGIHTT 180

Query: 181 IRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           IR+RRIIAGVGVEIVFP+YSPNIKE+KVV+HRKVRRARLYYLRDKLPRLSTFK
Sbjct: 181 IRVRRIIAGVGVEIVFPVYSPNIKEIKVVNHRKVRRARLYYLRDKLPRLSTFK 231

[Close]

BLAST of Cp4.1LG08g07190 vs. TrEMBL
Match: A5B2A3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037813 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.0e-75
Identity = 160/233 (68.67%), Postives = 184/233 (78.97%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFCS-------AIYGNRLSFSTLSSSSIGCHFHHA 60
           MASK+LPQA+F  PR+ NQ  P+KLG  +       ++  NRLS S  SS+S   HF   
Sbjct: 1   MASKVLPQALFITPRSSNQXPPKKLGLSTFPSPRSXSLNLNRLSTSRFSSNSFXFHFRPI 60

Query: 61  VAGPVKRTFVVRAEANSEAEAA------EEAPEVEVEGVVESDAQPEEVKPPRKPRVKLG 120
           V  P KR F+V AEA++E E        EE    E E  V+ DA+ +E KPPRKPRVKLG
Sbjct: 61  VVSP-KRFFIVXAEADNEGELGPDENTEEEETVSETESEVKLDAE-DEAKPPRKPRVKLG 120

Query: 121 DVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTT 180
           D+MGILNKRA+EASEKERP+PD+RTGDIVEIKLEVPENRRRLS+Y+GIVISKQNAGIHTT
Sbjct: 121 DIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIYKGIVISKQNAGIHTT 180

Query: 181 IRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           IR+RRIIAGVGVEIVFP+YSPNIKE+KVV+HRKVRRARLYYLRDKLPRLSTFK
Sbjct: 181 IRVRRIIAGVGVEIVFPVYSPNIKEIKVVNHRKVRRARLYYLRDKLPRLSTFK 231

[Close]

BLAST of Cp4.1LG08g07190 vs. TrEMBL
Match: W9RXS4_9ROSA (50S ribosomal protein L19-1 OS=Morus notabilis GN=L484_024039 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.4e-72
Identity = 157/229 (68.56%), Postives = 178/229 (77.73%), Query Frame = 1


Query: 6   LPQAVFSIPRTPNQCAPRKLGFCSAIYGNRLSFSTLSSSSIGCHFHHAVAGPV--KRTFV 65
           L QA+ +IPR PNQC  ++LGF S I  +R S S + S+ +   F  +  GP+  KR F 
Sbjct: 9   LQQALITIPRNPNQCPIKRLGFYSVI--SRRS-SPMKSAGVSTSFGGSNFGPLFAKRDFA 68

Query: 66  VRAEANSEAEAAEEAPEVE------------VEGVVESDAQPEEVKPPRKPRVKLGDVMG 125
           VRAE+N+E EA E     E             EG  E+ ++ EE KPPRKPRVKLGD+MG
Sbjct: 69  VRAESNAEGEAVEAEENAEENVGEGSEVVAGTEGEGEAVSESEEAKPPRKPRVKLGDIMG 128

Query: 126 ILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIR 185
           ILNKRAVEASE ERPIPDIRTGDIVEIKLEVPENRRRLSVY+GIVIS+QNAGIHTTIRIR
Sbjct: 129 ILNKRAVEASENERPIPDIRTGDIVEIKLEVPENRRRLSVYKGIVISRQNAGIHTTIRIR 188

Query: 186 RIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           RIIAG+GVEIVFPLYSPNIKE+KVV+HRKVRRARLYYLRDKLPRLSTFK
Sbjct: 189 RIIAGIGVEIVFPLYSPNIKEIKVVNHRKVRRARLYYLRDKLPRLSTFK 234

[Close]

BLAST of Cp4.1LG08g07190 vs. TrEMBL
Match: A0A067EPG0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026573mg PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-71
Identity = 159/236 (67.37%), Postives = 180/236 (76.27%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRK-LGFCSAIY-GNRLSFS-TLSSSSIGCHFHHAVAGP 60
           M S++LPQA+  IPR+  QC P K LGF + +  G  +S   ++S+  IG +    V   
Sbjct: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60

Query: 61  VKRTFVVRAEANSEAEAAEEAPE-------------VEVEGVVESDAQPEEVKPPRKPRV 120
           VK +FVVRAEAN EAEA E   E             V VE   E   + EEVK PRKPRV
Sbjct: 61  VKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRV 120

Query: 121 KLGDVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGI 180
           KLGD+MGILNKRAVEASE ERPIPDIRTGD+VEIKLEVPENRRRLS+Y+GIV+S+QNAGI
Sbjct: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGI 180

Query: 181 HTTIRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           HTTIRIRRIIAG+GVEIVFPLYSPNIKE+KVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 181 HTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236

[Close]

BLAST of Cp4.1LG08g07190 vs. TAIR10
Match: AT4G17560.1 (AT4G17560.1 Ribosomal protein L19 family protein)

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-68
Identity = 143/222 (64.41%), Postives = 174/222 (78.38%), Query Frame = 1


Query: 6   LPQAVFSIPRTPNQCAPRKLGF-----CSAIYGNRLSFSTLSSSSIGCHFHHAVAGPVKR 65
           LPQA+  IPR P Q + + LGF     C+    +R+S S LS +  G  F  ++   V+ 
Sbjct: 8   LPQALHMIPRNPTQSS-KNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRN 67

Query: 66  TFVVRAE-ANSEAEAAEEAPEV-EVEGVVESDAQPEEVKPPRKPRVKLGDVMGILNKRAV 125
            F+VRAE  N+EAE+ E   E+ + EG VE   +  E KP RKPR+KLGDVMGILN++A+
Sbjct: 68  EFIVRAEEGNTEAESEEFVAEIADTEGNVE---EVVEAKPTRKPRIKLGDVMGILNQKAI 127

Query: 126 EASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVG 185
           E +EK RP+P+IRTGDIVEIKLEVPEN+RRLS+Y+GIV+S+QNAGIHTTIRIRRIIAG+G
Sbjct: 128 EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 187

Query: 186 VEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           VEIVFP+YSPNIKE+KVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 188 VEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225

[Close]

BLAST of Cp4.1LG08g07190 vs. TAIR10
Match: AT5G47190.1 (AT5G47190.1 Ribosomal protein L19 family protein)

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-66
Identity = 136/227 (59.91%), Postives = 170/227 (74.89%), Query Frame = 1


Query: 2   ASKILPQAVFSIPRTPNQCAPRKLGFCSAI-----YGNRLSFSTLSSSSIGCHFHHAVAG 61
           +S +LPQA+  IPRTP+  + + LG  S +       +RLS S +  +    +F  A+  
Sbjct: 4   SSHLLPQALHMIPRTPS-FSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 63

Query: 62  PVKRTFVVRAEANSEAEA---AEEAPEVEVEGVVESDAQPEEVKPPRKPRVKLGDVMGIL 121
             ++ F+ +AE ++E E     E A E E EG  E+    EE KPP K RVKLGD+MG+L
Sbjct: 64  KKRKEFIAKAEESTEGETEAVVENAVETEAEGEGEATVAAEEAKPPWKTRVKLGDIMGLL 123

Query: 122 NKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRI 181
           NK+A+E +E  RP+P +RTGDIVEIKLEVPEN+RRLS+Y+GIV+S+QNAGIHTTIRIRRI
Sbjct: 124 NKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRI 183

Query: 182 IAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           IAG+GVEIVFP+YSPNIKE+KVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 184 IAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

[Close]

BLAST of Cp4.1LG08g07190 vs. TAIR10
Match: AT5G11750.1 (AT5G11750.1 Ribosomal protein L19 family protein)

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-32
Identity = 70/134 (52.24%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 84  EGVVESDAQ-PEEVKPPRKPRVKLGDVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEV 143
           +G  ESD   P+ +K  R  +     +M I++K AVE     R IP+I+ G IV++K+EV
Sbjct: 94  QGSPESDCVVPQRIKFKRLDKTAK-HIMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEV 153

Query: 144 PENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVR 203
           PEN+RR+S+ +G+VI+++NAG+++T RIRR++AGVGVE +FPLYSPN++E+KVV  +KVR
Sbjct: 154 PENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVR 213

Query: 204 RARLYYLRDKLPRL 217
           RA+LYYLRDK+  L
Sbjct: 214 RAKLYYLRDKVNAL 226

[Close]

BLAST of Cp4.1LG08g07190 vs. TAIR10
Match: AT4G11630.1 (AT4G11630.1 Ribosomal protein L19 family protein)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 82/217 (37.79%), Postives = 130/217 (59.91%), Query Frame = 1


Query: 2   ASKILPQAVFSIPRTPNQCAPRKLGFCSAIYGNRLSFSTLSSSSIGCHFHHAVAGP-VKR 61
           ++++L +  FSI  T    +    G  S     +L F +  SS    +   ++       
Sbjct: 7   STRLLQRHRFSISNTLRFTSSSSCGSWSENESRKLGFDSCPSSRAATYLISSLKNAGFSS 66

Query: 62  TFVVRAEANSEAEAAEEAPEVEVEGVVESDAQ-PEEVKPPRKPRVKLGDVMGILNKRAVE 121
           + + +      +       +  V+G  ESD   P+ +K  R  +     +M I++K AVE
Sbjct: 67  SAIPKQNFTYASRCFSTTGDSSVQGSPESDCVVPQRIKFKRLDKTAK-HIMQIVDKEAVE 126

Query: 122 ASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV 181
                R IP+I+ G IV++K+EVPEN+RR+S+ +G+VI+++NAG+++T RIRR++AGVGV
Sbjct: 127 EVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGV 186

Query: 182 EIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRL 217
           E +FPLYSPN++E+KVV  +KVRRA+LYYLRDK+  L
Sbjct: 187 ESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKVNAL 222

[Close]

BLAST of Cp4.1LG08g07190 vs. TAIR10
Match: AT1G24240.1 (AT1G24240.1 Ribosomal protein L19 family protein)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-30
Identity = 84/220 (38.18%), Postives = 133/220 (60.45%), Query Frame = 1


Query: 2   ASKILPQAVFSI----PRTPNQCAPRKLGFCSAIYGNRLSFSTLSSSSIGCHFHHAVAGP 61
           ++++L +  FSI    P T + C     G  SA    +L F +  S+    +   ++   
Sbjct: 7   STRLLQRHRFSISNTLPFTSSSC-----GSWSANESRKLGFDSFPSTRAATYLISSLKNA 66

Query: 62  VKRTFVVRAEANSEAEAAEEAPEVEVEGVVESDAQ-PEEVKPPRKPRVKLGDVMGILNKR 121
              +  V  + N  +       +  V+G  ESD   P+ +K  R  +     +M I++K 
Sbjct: 67  GFSSLAVVPKQNFSSRCFSTTGD-SVQGSPESDCVVPQRIKFKRLDKTAK-HIMQIVDKE 126

Query: 122 AVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAG 181
           AVE     R IP+I+ G IV++K+EVPEN+RR+S+ +G+VI+++NAG+++T RIRR++AG
Sbjct: 127 AVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAG 186

Query: 182 VGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRL 217
           VGVE +FPLYSPN++ +KVV  +KVRRA+LYYLR+K+  L
Sbjct: 187 VGVESMFPLYSPNLRVIKVVDKKKVRRAKLYYLREKVNAL 219

[Close]

BLAST of Cp4.1LG08g07190 vs. NCBI nr
Match: gi|449458994|ref|XP_004147231.1| (PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 8.8e-100
Identity = 193/221 (87.33%), Postives = 205/221 (92.76%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFCSAIYGNRLSFSTLSSSSIGCHFHHAVAGPVKR 60
           MASKILPQAV SIPR PNQCAPR+LGFCSA+ G R+SFSTLSSSSIG HFHH VA P++R
Sbjct: 1   MASKILPQAVISIPRNPNQCAPRRLGFCSAVSGTRVSFSTLSSSSIGSHFHHTVAAPLRR 60

Query: 61  TFVVRAEANSEAE-AAEEAPEVEVEGVVESDAQPEEVKPPRKPRVKLGDVMGILNKRAVE 120
            FVVRAEAN EA+ AAEEAPE EVE  VESDAQPEE KP RKPRVKLGDVMGILNKRA+E
Sbjct: 61  AFVVRAEANPEADSAAEEAPEAEVEAAVESDAQPEEEKPSRKPRVKLGDVMGILNKRAIE 120

Query: 121 ASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV 180
           ASEKERPIPDIRTGDIVE+KLEV ENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV
Sbjct: 121 ASEKERPIPDIRTGDIVELKLEVQENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV 180

Query: 181 EIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           EIVFPLYSPNI+E++VVSHRKVRRARLYYLRDKLP+LSTFK
Sbjct: 181 EIVFPLYSPNIREIRVVSHRKVRRARLYYLRDKLPKLSTFK 221

[Close]

BLAST of Cp4.1LG08g07190 vs. NCBI nr
Match: gi|659095823|ref|XP_008448785.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Cucumis melo])

HSP 1 Score: 369.0 bits (946), Expect = 5.7e-99
Identity = 193/221 (87.33%), Postives = 203/221 (91.86%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFCSAIYGNRLSFSTLSSSSIGCHFHHAVAGPVKR 60
           MASKILPQAV SIPR PNQC PR+LGFCSA+ G R+SFSTLSSSSIG HF H V+ P+KR
Sbjct: 1   MASKILPQAVISIPRNPNQCPPRRLGFCSAVSGTRVSFSTLSSSSIGSHFRHTVSAPLKR 60

Query: 61  TFVVRAEANSEAE-AAEEAPEVEVEGVVESDAQPEEVKPPRKPRVKLGDVMGILNKRAVE 120
            FVVRAEAN EAE AAEEAPE EVE  VESDAQPEE KP RKPRVKLGDVMGILNKRA+E
Sbjct: 61  AFVVRAEANPEAESAAEEAPEAEVEAAVESDAQPEEEKPSRKPRVKLGDVMGILNKRAIE 120

Query: 121 ASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV 180
           ASEKERPIPDIRTGDIVE+KLEV ENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV
Sbjct: 121 ASEKERPIPDIRTGDIVELKLEVQENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGV 180

Query: 181 EIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           EIVFPLYSPNI+E+KVVSHRKVRRARLYYLRDKLP+LSTFK
Sbjct: 181 EIVFPLYSPNIREIKVVSHRKVRRARLYYLRDKLPKLSTFK 221

[Close]

BLAST of Cp4.1LG08g07190 vs. NCBI nr
Match: gi|658022227|ref|XP_008346520.1| (PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like [Malus domestica])

HSP 1 Score: 294.7 bits (753), Expect = 1.4e-76
Identity = 165/242 (68.18%), Postives = 192/242 (79.34%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFCSAIYG-----NRLSFSTLSSSSIGCHFHHAVA 60
           M SKILPQA+ +IPR PN+  P KLGF +A+       +R+S S +SSSSIG  F   V+
Sbjct: 1   MGSKILPQALLTIPRNPNEFPPVKLGFSAALARRSSNCSRVSLSRVSSSSIGSVFSPIVS 60

Query: 61  GPVKRTFVVRAEANSEAE--AAEEAPEVEVEG-------VVESDAQ--------PEEVKP 120
              KR FVVRAE +SE E  A ++A E+E  G       VVES+A+        PEE KP
Sbjct: 61  AMSKRNFVVRAEPSSEGETGATDDAQEIEAAGRGEASVAVVESEAEAEAVLESEPEEPKP 120

Query: 121 PRKPRVKLGDVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVIS 180
           PRK RVKLGD+MGILNKRAVEA+E+ERP+PDIRTGD+V+IKLEVPEN+RRLS+Y+GIVIS
Sbjct: 121 PRKSRVKLGDIMGILNKRAVEAAEQERPVPDIRTGDVVQIKLEVPENKRRLSIYKGIVIS 180

Query: 181 KQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLST 221
           +QNAGIHTTIRIRRIIAG+GVEIVFPLYSPNIKELKV+SHRKVRRARLYYLRDKLPRLST
Sbjct: 181 RQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKELKVLSHRKVRRARLYYLRDKLPRLST 240

[Close]

BLAST of Cp4.1LG08g07190 vs. NCBI nr
Match: gi|359497145|ref|XP_002264869.2| (PREDICTED: 50S ribosomal protein L19-2, chloroplastic [Vitis vinifera])

HSP 1 Score: 292.7 bits (748), Expect = 5.2e-76
Identity = 162/233 (69.53%), Postives = 185/233 (79.40%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFC-------SAIYGNRLSFSTLSSSSIGCHFHHA 60
           MASK+LPQA+F  PR+ NQ  P+KLG         S++  NRLS S  SS+S   HF   
Sbjct: 1   MASKVLPQALFITPRSSNQWPPKKLGLSTFPSPRSSSLNLNRLSTSRFSSNSFAFHFRPI 60

Query: 61  VAGPVKRTFVVRAEANSEAEAA------EEAPEVEVEGVVESDAQPEEVKPPRKPRVKLG 120
           V  P KR F+VRAEA++E E        EE    E E  V+ DA+ +E KPPRKPRVKLG
Sbjct: 61  VVSP-KRFFIVRAEADNEGELGADENTEEEETVSETESEVKLDAE-DEAKPPRKPRVKLG 120

Query: 121 DVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTT 180
           D+MGILNKRA+EASEKERP+PD+RTGDIVEIKLEVPENRRRLS+Y+GIVISKQNAGIHTT
Sbjct: 121 DIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIYKGIVISKQNAGIHTT 180

Query: 181 IRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           IR+RRIIAGVGVEIVFP+YSPNIKE+KVV+HRKVRRARLYYLRDKLPRLSTFK
Sbjct: 181 IRVRRIIAGVGVEIVFPVYSPNIKEIKVVNHRKVRRARLYYLRDKLPRLSTFK 231

[Close]

BLAST of Cp4.1LG08g07190 vs. NCBI nr
Match: gi|147854523|emb|CAN82787.1| (hypothetical protein VITISV_037813 [Vitis vinifera])

HSP 1 Score: 289.3 bits (739), Expect = 5.8e-75
Identity = 160/233 (68.67%), Postives = 184/233 (78.97%), Query Frame = 1


Query: 1   MASKILPQAVFSIPRTPNQCAPRKLGFCS-------AIYGNRLSFSTLSSSSIGCHFHHA 60
           MASK+LPQA+F  PR+ NQ  P+KLG  +       ++  NRLS S  SS+S   HF   
Sbjct: 1   MASKVLPQALFITPRSSNQXPPKKLGLSTFPSPRSXSLNLNRLSTSRFSSNSFXFHFRPI 60

Query: 61  VAGPVKRTFVVRAEANSEAEAA------EEAPEVEVEGVVESDAQPEEVKPPRKPRVKLG 120
           V  P KR F+V AEA++E E        EE    E E  V+ DA+ +E KPPRKPRVKLG
Sbjct: 61  VVSP-KRFFIVXAEADNEGELGPDENTEEEETVSETESEVKLDAE-DEAKPPRKPRVKLG 120

Query: 121 DVMGILNKRAVEASEKERPIPDIRTGDIVEIKLEVPENRRRLSVYRGIVISKQNAGIHTT 180
           D+MGILNKRA+EASEKERP+PD+RTGDIVEIKLEVPENRRRLS+Y+GIVISKQNAGIHTT
Sbjct: 121 DIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIYKGIVISKQNAGIHTT 180

Query: 181 IRIRRIIAGVGVEIVFPLYSPNIKELKVVSHRKVRRARLYYLRDKLPRLSTFK 221
           IR+RRIIAGVGVEIVFP+YSPNIKE+KVV+HRKVRRARLYYLRDKLPRLSTFK
Sbjct: 181 IRVRRIIAGVGVEIVFPVYSPNIKEIKVVNHRKVRRARLYYLRDKLPRLSTFK 231

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK191_ARATH	3.4e-67	64.41	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 ...	[more]
RK19_SPIOL	8.4e-66	62.82	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2	[more]
RK192_ARATH	2.4e-65	59.91	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 ...	[more]
RL19_CYAP4	9.0e-20	45.28	50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]
RL19_NOSP7	3.4e-19	44.34	50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]

BLAST of Cp4.1LG08g07190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L237_CUCSA	6.2e-100	87.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017220 PE=4 SV=1	[more]
D7U6T6_VITVI	3.6e-76	69.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0616g00020 PE=4 SV=...	[more]
A5B2A3_VITVI	4.0e-75	68.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037813 PE=4 SV=1	[more]
W9RXS4_9ROSA	5.4e-72	68.56	50S ribosomal protein L19-1 OS=Morus notabilis GN=L484_024039 PE=4 SV=1	[more]
A0A067EPG0_CITSI	1.2e-71	67.37	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026573mg PE=4 SV=1	[more]

BLAST of Cp4.1LG08g07190 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17560.1	1.9e-68	64.41	Ribosomal protein L19 family protein	[more]
AT5G47190.1	1.4e-66	59.91	Ribosomal protein L19 family protein	[more]
AT5G11750.1	8.4e-32	52.24	Ribosomal protein L19 family protein	[more]
AT4G11630.1	1.4e-31	37.79	Ribosomal protein L19 family protein	[more]
AT1G24240.1	2.7e-30	38.18	Ribosomal protein L19 family protein	[more]

BLAST of Cp4.1LG08g07190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458994\|ref\|XP_004147231.1\|	8.8e-100	87.33	PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Cucumis sativus]	[more]
gi\|659095823\|ref\|XP_008448785.1\|	5.7e-99	87.33	PREDICTED: 50S ribosomal protein L19, chloroplastic [Cucumis melo]	[more]
gi\|658022227\|ref\|XP_008346520.1\|	1.4e-76	68.18	PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like [Malus domestica]	[more]
gi\|359497145\|ref\|XP_002264869.2\|	5.2e-76	69.53	PREDICTED: 50S ribosomal protein L19-2, chloroplastic [Vitis vinifera]	[more]
gi\|147854523\|emb\|CAN82787.1\|	5.8e-75	68.67	hypothetical protein VITISV_037813 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR008991	Translation_prot_SH3-like_sf
IPR001857	Ribosomal_L19

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0035194	posttranscriptional gene silencing by RNA
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
cellular_component	GO:0005840	ribosome
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g07190.1	Cp4.1LG08g07190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 173..196 score: 1.7E-10coord: 114..143 score: 1.7
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 1..220 score: 3.7E
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 117..213 score: 2.9
IPR001857	Ribosomal protein L19	TIGRFAMs	TIGR01024	TIGR01024	coord: 118..212 score: 1.7
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 117..220 score: 7.92
None	No IPR available	PANTHER	PTHR15680:SF10	50S RIBOSOMAL PROTEIN L19-1, CHLOROPLASTIC-RELATED	coord: 1..220 score: 3.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g07190	Cucsa.321270	Cucumber (Gy14) v1	cgycpeB0857
Cp4.1LG08g07190	CmaCh16G011100	Cucurbita maxima (Rimu)	cmacpeB364
Cp4.1LG08g07190	CmaCh06G008100	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g07190	CmoCh06G008320	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g07190	Csa3G017220	Cucumber (Chinese Long) v2	cpecuB850
Cp4.1LG08g07190	MELO3C013906	Melon (DHL92) v3.5.1	cpemeB814
Cp4.1LG08g07190	CSPI03G02330	Wild cucumber (PI 183967)	cpecpiB852
Cp4.1LG08g07190	Lsi07G012600	Bottle gourd (USVL1VR-Ls)	cpelsiB721
Cp4.1LG08g07190	MELO3C013906.2	Melon (DHL92) v3.6.1	cpemedB948
Cp4.1LG08g07190	CsaV3_3G002360	Cucumber (Chinese Long) v3	cpecucB1047
Cp4.1LG08g07190	Bhi11G000057	Wax gourd	cpewgoB1090
Cp4.1LG08g07190	CsGy3G002230	Cucumber (Gy14) v2	cgybcpeB445
Cp4.1LG08g07190	Carg12041	Silver-seed gourd	carcpeB0808

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g07190	Cp4.1LG14g09130	Cucurbita pepo (Zucchini)	cpecpeB250

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g07190	Silver-seed gourd	carcpeB0991
Cp4.1LG08g07190	Cucurbita pepo (Zucchini)	cpecpeB508
Cp4.1LG08g07190	Cucurbita moschata (Rifu)	cmocpeB328
Cp4.1LG08g07190	Cucurbita moschata (Rifu)	cmocpeB601
Cp4.1LG08g07190	Watermelon (Charleston Gray)	cpewcgB766
Cp4.1LG08g07190	Watermelon (97103) v1	cpewmB828