Cp4.1LG08g06830 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g06830
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Dof zinc finger protein
Location	Cp4.1LG08 : 5134313 .. 5136248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTTCACCCATTTCAAACATGAGTTCCGCTACTCACCATCTCCTCTCCGCCCCACATTTCAAGGATCTCGCCATTAAACTCTTCGGCCGCACCATCCCTTTGCCGGAATCCAACATTTCCGCCGCCCTGCAAAATCTCGTATCTATTTTCATTCGCTCTCTTCTTTCTTTCTGCCTTTAATCTCATTGTTTTACTTATTTGTTTCTGTGGGACATCTCTCCTATGAATGTATTCAATCTTAACTTCATTTTGTTTCCATTTCTCCATCTTCATTTCTTCATTTCTCCCTGTTTCCTTTCCTTGTCTTTTCCCTTATTTGGAAACATTGTATTCAGGATGGTTGCAACCATTTCAAAGAAGGTGAGCACTGTGTGTCGGGTGCAGAAGACTCCAGGTCCAGCGTTTTAGTACGCGATGATGAACAAAAGCAAGCCTCGAAGGAGGAGGAAGTGCATTTCAAAGAGCAGCAGGGAGATGGTAATGAGGAGAGAGTTTTGAAGAAGCCAGACAAGATCATTCCTTGTCCTAGATGTAACAGTTTACAAACTAAGTTCTGTTACTTCAACAACTACAATGTCAATCAACCTAGGCATTTCTGCAAGAACTGCCAAAGATATTGGACTGCTGGTGGCACCATCAGAAACCTTCCTATCGGTGCAGGACGACGAAGGAACAAGCAATTGCCATCTCAATACCGACCTATAATACTATCATCCTCCGAGGGACTTGCGACATCTCGGTTCGAACCATCGGATTCGACGAATCACCATCAATTGATATCAGGCCTTCAGTCTCCTGCTTTCAGGCCTTCCAATGCCAATGCCACTCTTCTGAAGTTTGGACCTGAAGCACCACTTTGTGAATCCATGGAGACCGTGCTCAGTCTTGGAGACCAGAAGAGGTCCATTCAGATTGGCTCTGCATATAGCAGAGACAGTCCTGATGAACCATCCTCCTGTGGATCCTCCTCCATGACAACGAATGAATTCCCTAAAACTGTCGTCGACAGGGAAGCAGCCAGACTGTCGGGTTCGAGTAATGAGAACACTTCACCGAACACGGTTCGTTGTTACCCCGTTCCACAATTGGTTTTTCCATTGAATCAGGGTGGGAACGGTATAGTTTCATCAGCAATGGCTAAAGGTTCAGATGGCACGAGTATATCCAATCCAGTTCAATGGCTTCCTGCGACAATGCTGGCAGTTCCAGGCTATTGCACGCCTAGCCTTCCATTACAATTTGTGGCAGCATCATATTGGGGCTGCACGCCTGTATGGACCGCAGCTGGTGTCCATGCATCTCAAACATCCGCAGCTACCATCGGCAGCTGCGCCACGAGTTCATCACCGACACTCGGAAAGCATTCGAGAGATGCAAGTAGCAGCTTGACAGAGGAAGAGGAATCAGAGAAATACGTGGTGGTACCAAAGACAGTACGGGTTGATAAGGTGAGCGAAGGGTCGAGGAGTCCAATATGGACGACATTTGAAACTACAGAAAGTAATGCAGATGGCAAAGAGCATTACAGGGAGGCTCCTCATCTCTTGGAAACAAAAACTGGAAGCTTTTACTTGTAGATTTTCCTTCAGACCACATAGAATGTAATTCTTTTTTTTCGTGACTGTTTTAAAGCTGTTCATATAATTCTGAAAGCCTTGCCAGAAATTTGGTACATATGATGTTTTTGGGTCACACAGTTAAGAGAATTAATCTTCCATTCTTCCATTGCCTCTGGCATCATCTGAGATCAGTAATTCTAGTTTGGTGCTTCCATGTTGTACCATGATTCAATTTGGTTTATAATTATGGATATCAATATTGAGGTTGGAAGGGGTTGCGAGGCAAGCAACCAAACAGATTGGAAGATGTTATTACTCCTTTAATTTAGAAGTGGGGTTTGTTGTGAGAGGGTGTTGGGAAGGTAGCACAACATT

mRNA sequence

TGATTTCACCCATTTCAAACATGAGTTCCGCTACTCACCATCTCCTCTCCGCCCCACATTTCAAGGATCTCGCCATTAAACTCTTCGGCCGCACCATCCCTTTGCCGGAATCCAACATTTCCGCCGCCCTGCAAAATCTCGATGGTTGCAACCATTTCAAAGAAGGTGAGCACTGTGTGTCGGGTGCAGAAGACTCCAGGTCCAGCGTTTTAGTACGCGATGATGAACAAAAGCAAGCCTCGAAGGAGGAGGAAGTGCATTTCAAAGAGCAGCAGGGAGATGGTAATGAGGAGAGAGTTTTGAAGAAGCCAGACAAGATCATTCCTTGTCCTAGATGTAACAGTTTACAAACTAAGTTCTGTTACTTCAACAACTACAATGTCAATCAACCTAGGCATTTCTGCAAGAACTGCCAAAGATATTGGACTGCTGGTGGCACCATCAGAAACCTTCCTATCGGTGCAGGACGACGAAGGAACAAGCAATTGCCATCTCAATACCGACCTATAATACTATCATCCTCCGAGGGACTTGCGACATCTCGGTTCGAACCATCGGATTCGACGAATCACCATCAATTGATATCAGGCCTTCAGTCTCCTGCTTTCAGGCCTTCCAATGCCAATGCCACTCTTCTGAAGTTTGGACCTGAAGCACCACTTTGTGAATCCATGGAGACCGTGCTCAGTCTTGGAGACCAGAAGAGGTCCATTCAGATTGGCTCTGCATATAGCAGAGACAGTCCTGATGAACCATCCTCCTGTGGATCCTCCTCCATGACAACGAATGAATTCCCTAAAACTGTCGTCGACAGGGAAGCAGCCAGACTGTCGGGTTCGAGTAATGAGAACACTTCACCGAACACGGTTCGTTGTTACCCCGTTCCACAATTGGTTTTTCCATTGAATCAGGGTGGGAACGGTATAGTTTCATCAGCAATGGCTAAAGGTTCAGATGGCACGAGTATATCCAATCCAGTTCAATGGCTTCCTGCGACAATGCTGGCAGTTCCAGGCTATTGCACGCCTAGCCTTCCATTACAATTTGTGGCAGCATCATATTGGGGCTGCACGCCTGTATGGACCGCAGCTGGTGTCCATGCATCTCAAACATCCGCAGCTACCATCGGCAGCTGCGCCACGAGTTCATCACCGACACTCGGAAAGCATTCGAGAGATGCAAGTAGCAGCTTGACAGAGGAAGAGGAATCAGAGAAATACGTGGTGGTACCAAAGACAGTACGGGTTGATAAGGTGAGCGAAGGGTCGAGGAGTCCAATATGGACGACATTTGAAACTACAGAAAGTAATGCAGATGGCAAAGAGCATTACAGGGAGGCTCCTCATCTCTTGGAAACAAAAACTGGAAGCTTTTACTTGTAGATTTTCCTTCAGACCACATAGAATGTAATTCTTTTTTTTCGTGACTGTTTTAAAGCTGTTCATATAATTCTGAAAGCCTTGCCAGAAATTTGGTACATATGATGTTTTTGGGTCACACAGTTAAGAGAATTAATCTTCCATTCTTCCATTGCCTCTGGCATCATCTGAGATCAGTAATTCTAGTTTGGTGCTTCCATGTTGTACCATGATTCAATTTGGTTTATAATTATGGATATCAATATTGAGGTTGGAAGGGGTTGCGAGGCAAGCAACCAAACAGATTGGAAGATGTTATTACTCCTTTAATTTAGAAGTGGGGTTTGTTGTGAGAGGGTGTTGGGAAGGTAGCACAACATT

Coding sequence (CDS)

ATGAGTTCCGCTACTCACCATCTCCTCTCCGCCCCACATTTCAAGGATCTCGCCATTAAACTCTTCGGCCGCACCATCCCTTTGCCGGAATCCAACATTTCCGCCGCCCTGCAAAATCTCGATGGTTGCAACCATTTCAAAGAAGGTGAGCACTGTGTGTCGGGTGCAGAAGACTCCAGGTCCAGCGTTTTAGTACGCGATGATGAACAAAAGCAAGCCTCGAAGGAGGAGGAAGTGCATTTCAAAGAGCAGCAGGGAGATGGTAATGAGGAGAGAGTTTTGAAGAAGCCAGACAAGATCATTCCTTGTCCTAGATGTAACAGTTTACAAACTAAGTTCTGTTACTTCAACAACTACAATGTCAATCAACCTAGGCATTTCTGCAAGAACTGCCAAAGATATTGGACTGCTGGTGGCACCATCAGAAACCTTCCTATCGGTGCAGGACGACGAAGGAACAAGCAATTGCCATCTCAATACCGACCTATAATACTATCATCCTCCGAGGGACTTGCGACATCTCGGTTCGAACCATCGGATTCGACGAATCACCATCAATTGATATCAGGCCTTCAGTCTCCTGCTTTCAGGCCTTCCAATGCCAATGCCACTCTTCTGAAGTTTGGACCTGAAGCACCACTTTGTGAATCCATGGAGACCGTGCTCAGTCTTGGAGACCAGAAGAGGTCCATTCAGATTGGCTCTGCATATAGCAGAGACAGTCCTGATGAACCATCCTCCTGTGGATCCTCCTCCATGACAACGAATGAATTCCCTAAAACTGTCGTCGACAGGGAAGCAGCCAGACTGTCGGGTTCGAGTAATGAGAACACTTCACCGAACACGGTTCGTTGTTACCCCGTTCCACAATTGGTTTTTCCATTGAATCAGGGTGGGAACGGTATAGTTTCATCAGCAATGGCTAAAGGTTCAGATGGCACGAGTATATCCAATCCAGTTCAATGGCTTCCTGCGACAATGCTGGCAGTTCCAGGCTATTGCACGCCTAGCCTTCCATTACAATTTGTGGCAGCATCATATTGGGGCTGCACGCCTGTATGGACCGCAGCTGGTGTCCATGCATCTCAAACATCCGCAGCTACCATCGGCAGCTGCGCCACGAGTTCATCACCGACACTCGGAAAGCATTCGAGAGATGCAAGTAGCAGCTTGACAGAGGAAGAGGAATCAGAGAAATACGTGGTGGTACCAAAGACAGTACGGGTTGATAAGGTGAGCGAAGGGTCGAGGAGTCCAATATGGACGACATTTGAAACTACAGAAAGTAATGCAGATGGCAAAGAGCATTACAGGGAGGCTCCTCATCTCTTGGAAACAAAAACTGGAAGCTTTTACTTGTAG

Protein sequence

MSSATHHLLSAPHFKDLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEHCVSGAEDSRSSVLVRDDEQKQASKEEEVHFKEQQGDGNEERVLKKPDKIIPCPRCNSLQTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRFEPSDSTNHHQLISGLQSPAFRPSNANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYSRDSPDEPSSCGSSSMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVPQLVFPLNQGGNGIVSSAMAKGSDGTSISNPVQWLPATMLAVPGYCTPSLPLQFVAASYWGCTPVWTAAGVHASQTSAATIGSCATSSSPTLGKHSRDASSSLTEEEESEKYVVVPKTVRVDKVSEGSRSPIWTTFETTESNADGKEHYREAPHLLETKTGSFYL

Homology

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BLAST of Cp4.1LG08g06830 vs. Swiss-Prot
Match: CDF3_ARATH (Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-45
Identity = 146/440 (33.18%), Postives = 206/440 (46.82%), Query Frame = 1


Query: 15  KDLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGE-----------------HCVSGA- 74
           +D AIKLFG  IP P    SA     D  + +  G+                 +C   + 
Sbjct: 6   RDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSF 65

Query: 75  EDSRSSVLVRDDEQKQASKEEEVHFKEQQGDGNEERVLKKPDKIIPCPRCNSLQTKFCYF 134
            +S+   L +++       E     ++ Q    + + LKKP KI+PCPRC S++TKFCY+
Sbjct: 66  NNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDGKTLKKPTKILPCPRCKSMETKFCYY 125

Query: 135 NNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRF 194
           NNYN+NQPRHFCK CQRYWTAGGT+RN+P+GAGRR+NK   S YR I +  SE L  +R 
Sbjct: 126 NNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITI--SEALEAARL 185

Query: 195 EPSDSTNHHQLISGLQSPAFRPSNANATLLKFGPEAPLCESMETVL-SLGDQKRSIQIGS 254
           +P    N   L  GL++     +     ++K   +  +          L DQ+   ++  
Sbjct: 186 DPGLQANTRVLSFGLEAQQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARV-- 245

Query: 255 AYSRDSPDEPSSCGSSSMTTNEFPKTVVDREAARLSGS-------SNENTSPNTVRCYPV 314
               ++ D+ SS GSS  T+N      VD   A+ SGS       +N N + N   C P 
Sbjct: 246 ----ENGDDCSS-GSSVTTSNNHS---VDESRAQ-SGSVVEAQMNNNNNNNMNGYACIP- 305

Query: 315 PQLVFPLNQGGNGIVSSAMAKGSDGTSISNPVQWLPATMLAVPG-YCTPSLPLQFVAASY 374
                                      +  P  W PA  +  PG Y  P  P+ F     
Sbjct: 306 --------------------------GVPWPYTWNPA--MPPPGFYPPPGYPMPFY---- 365

Query: 375 WGCTPVWTAAGVHASQTSAATIGSCATSSSPTLGKHSRDASSSLTEEEESEKY----VVV 424
               P WT   +   Q+S+     C+ ++SPTLGKH RD  SS  + E   K     V+V
Sbjct: 366 ----PYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQKAGCVLV 395

[Close]

BLAST of Cp4.1LG08g06830 vs. Swiss-Prot
Match: CDF2_ARATH (Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-37
Identity = 134/388 (34.54%), Postives = 182/388 (46.91%), Query Frame = 1


Query: 61  SSVLVRDDEQKQASKEEEVHFKEQQGDG-NEERVLKKPDKIIPCPRCNSLQTKFCYFNNY 120
           +S +    E  +A+K  E    E  G   ++E  LKKPDKI+PCPRCNS++TKFCY+NNY
Sbjct: 101 TSGITEKTETTKAAKTNE----ESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNY 160

Query: 121 NVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQY-RPIILSSSEGLATSRFEP 180
           NVNQPRHFCK CQRYWTAGGT+RN+P+GAGRR+NK   S Y R + ++S+E  A  +   
Sbjct: 161 NVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPASHYNRHVSITSAE--AMQKVAR 220

Query: 181 SDSTNHHQLISGLQSPAFRPSNANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYS 240
           +D          LQ P        A LL FG ++ LCESM + L+L ++     + +   
Sbjct: 221 TD----------LQHP------NGANLLTFGSDSVLCESMASGLNLVEKS---LLKTQTV 280

Query: 241 RDSPDEPSSCGSSSMTTNEFPKTVVDREAARLSGSSNENTSP-NTVRCYPVPQLVFPLNQ 300
              P+E          TNE   TV                SP   V C+P P   +P   
Sbjct: 281 LQEPNEGLKITVPLNQTNEEAGTV----------------SPLPKVPCFPGPPPTWPYAW 340

Query: 301 GGNGIVSSAMAKGSDGTSISNPVQWLPATMLAVPGYCTPSLPLQFVAASYWGCTPVWTAA 360
            G                    V W       +P Y  P         +YW C  V   A
Sbjct: 341 NG--------------------VSW-----TILPFYPPP---------AYWSCPGVSPGA 400

Query: 361 GVHASQTSAATIGSCATSSSPTLGKHSRDASSSL------------TEEEESEKYVVVPK 420
               +        S +  +SPTLGKHSRD +++              E+ + E+ + VPK
Sbjct: 401 WNSFTWMPQPNSPSGSNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPK 413

Query: 421 TVRVDKVSEGSRSPIWTTFE-TTESNAD 433
           T+R+D   E ++S IW T     + NAD
Sbjct: 461 TLRIDDPEEAAKSSIWETLGIKKDENAD 413

[Close]

BLAST of Cp4.1LG08g06830 vs. Swiss-Prot
Match: DOF13_ARATH (Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-29
Identity = 80/190 (42.11%), Postives = 106/190 (55.79%), Query Frame = 1


Query: 15  KDLAIKLFGRTIP-------------LPESNISAALQNLDGCNHFKEGEHCVSGAEDSRS 74
           +D  +KLFG TI              LP+S+ S++  +L    H    +          S
Sbjct: 5   RDTPVKLFGWTITPVSHDPYSSSSHVLPDSSSSSSSSSLSLRPHMMNNQSVTDNTSLKLS 64

Query: 75  SVLVRDDEQKQASKEEEVHFKEQQGDGNEERV---LKKPDKIIPCPRCNSLQTKFCYFNN 134
           S L  ++E K+ S+  +    E     +EE     LKKPDKI+PCPRCNS  TKFCY+NN
Sbjct: 65  SNL--NNESKETSENSDDQHSEITTITSEEEKTTELKKPDKILPCPRCNSADTKFCYYNN 124

Query: 135 YNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPS--QYRPIILSSSEGLATS-- 182
           YNVNQPRHFC+ CQRYWTAGG++R +P+G+GRR+NK   S  QY  I    ++   +S  
Sbjct: 125 YNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGWVSSDQYLHITSEDTDNYNSSST 184

[Close]

BLAST of Cp4.1LG08g06830 vs. Swiss-Prot
Match: CDF1_ARATH (Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 7.5e-29
Identity = 67/147 (45.58%), Postives = 96/147 (65.31%), Query Frame = 1


Query: 73  ASKEEEVHFKEQQGDGNE-ERVLKKPDKIIPCPRCNSLQTKFCYFNNYNVNQPRHFCKNC 132
           A +EEE +  +   D +E ++ LKKP KI+PCPRCNS++TKFCY+NNYNVNQPRHFCK C
Sbjct: 25  ADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKAC 84

Query: 133 QRYWTAGGTIRNLPIGAGRRRNK--QLPSQYRPIILSSSEG------LATSRFEPSDSTN 192
           QRYWT+GGT+R++PIGAGRR+NK     S Y  + +S + G      L   +   S+   
Sbjct: 85  QRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISETNGPVLSFSLGDDQKVSSNRFG 144

Query: 193 HHQLISGLQSPAFRPSNANATLLKFGP 211
           + +L++ +++   R +N  +  L   P
Sbjct: 145 NQKLVARIENNDERSNNNTSNGLNCFP 171

[Close]

BLAST of Cp4.1LG08g06830 vs. Swiss-Prot
Match: CDF5_ARATH (Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-28
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 88  GNEERVLKKPDKIIPCPRCNSLQTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIG 147
           G +   LKKPDK+IPCPRC S  TKFCY+NNYNVNQPR+FC+NCQRYWTAGG++RN+P+G
Sbjct: 119 GEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVG 178

Query: 148 AGRRRNKQLPSQYRPIILSSSE 170
           +GRR+NK  PS    + ++S +
Sbjct: 179 SGRRKNKGWPSSNHYLQVTSED 200

[Close]

BLAST of Cp4.1LG08g06830 vs. TrEMBL
Match: A0A0A0LBU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822310 PE=4 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 6.2e-171
Identity = 333/500 (66.60%), Postives = 383/500 (76.60%), Query Frame = 1


Query: 2   SSATHHLLSAPHFKDLAIKLFGRTIPLPESNISAA-LQNLDGCNHFKEGEHCVSGAEDS- 61
           SS T  ++S PHFKDLAIKLFGRTIPLPES ISAA L N D CN+ K+ E  VSGAEDS 
Sbjct: 3   SSTTQDVISPPHFKDLAIKLFGRTIPLPESQISAAPLHNPDACNNLKKAEQSVSGAEDSC 62

Query: 62  ---RSSVLVRDDEQKQASK------EEEVHFKEQQGDGN---EERVLKKPDKIIPCPRCN 121
              RSSVLV D+E+ QAS       E E+H KE+Q DGN   +ER  KKPDKIIPCPRCN
Sbjct: 63  PSERSSVLVGDNEENQASNVTSNKGESELHLKEEQEDGNGTDQERAFKKPDKIIPCPRCN 122

Query: 122 SLQTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSS 181
           SL+TKFCYFNNYNVNQPRHFCKNCQRYWTAGGT+RN+PIGAGRRRNKQL SQYR II+ S
Sbjct: 123 SLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNKQLASQYRQIIV-S 182

Query: 182 SEGLATSRFEPSDSTNHHQLISGLQSP-AFRPSNANATLLKFGPEAPLCESMETVLSLGD 241
           SEG+AT+R E SD+TNHH L+S ++SP A RPSN ++T+LKFGPEAPLCESMETVLSLGD
Sbjct: 183 SEGVATTRLETSDATNHHHLLSNIESPSALRPSNGSSTVLKFGPEAPLCESMETVLSLGD 242

Query: 242 QKRSIQIGSAYSRDSPDEPSSCGSSSMTT----NEFPKTVVDR-EAARLSGSSNENTSPN 301
           QKRSI+IGSAY  DSP+EPSSCGSS  TT    NE PK+V++R EA RLS SS++ T+ N
Sbjct: 243 QKRSIEIGSAYCGDSPEEPSSCGSSMTTTSIRGNELPKSVIERPEAVRLSNSSSDITASN 302

Query: 302 TVRCYPVPQLVFPLNQGGNGIVSSAMAKGSDGTSISN-------PVQWLPATMLAVPGYC 361
           TV CYPVPQLVFPLNQGG+ ++SSAM + SD TS+ N       PVQWLPAT+LAVPG+C
Sbjct: 303 TVHCYPVPQLVFPLNQGGSSLISSAMTQSSDSTSVPNTSSHPNPPVQWLPATVLAVPGFC 362

Query: 362 TPSLPLQFVAASYWGCTPVWTAAG-----VHASQTSAATIGSCATSSSPTLGKHSRDASS 421
           TPSLPLQFV AS WGCTPVWT+ G     V  S   A+   +C TSSSPTLGKH RD ++
Sbjct: 363 TPSLPLQFVPASCWGCTPVWTSTGTGNLTVVPSDVCASQTSTCPTSSSPTLGKHLRD-TN 422

Query: 422 SLTEEEESEKYVVVPKTVRVDKVSEGSRSPIWTT----------------FETTE-SNAD 453
           SL E+E+SEK VVVPKT+RVD  SE SRSPIWTT                FET+E +NAD
Sbjct: 423 SLAEDEKSEKCVVVPKTLRVDNPSEASRSPIWTTFGIHPYPKENISKGSVFETSETTNAD 482

[Close]

BLAST of Cp4.1LG08g06830 vs. TrEMBL
Match: B9SI55_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320870 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 3.0e-109
Identity = 236/482 (48.96%), Postives = 307/482 (63.69%), Query Frame = 1


Query: 12  PHFKDLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEHCV-----SGAEDSRSSVLVR 71
           P  KD A KLFGR IP+P++ I A  +  + CN   +GE  +     +G +D  S+    
Sbjct: 13  PQSKDPAFKLFGRKIPVPDTQIPAKPEFKNSCNDSIKGETDIYDEDNTGEQDKLSATGQT 72

Query: 72  DDEQ---KQASKEEEVHFKEQQGDGN---EERVLKKPDKIIPCPRCNSLQTKFCYFNNYN 131
            +E+   KQ ++E +   K+ Q + N   +E+V KKPDKI+PCPRCNSL TKFCYFNNYN
Sbjct: 73  KEERQTPKQVNEEAQSGPKDDQVETNSTDQEKVFKKPDKILPCPRCNSLDTKFCYFNNYN 132

Query: 132 VNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRFEPSD 191
           VNQPRHFCKNCQRYWTAGGT+RN+PIGAGRR+NK L SQYR I++ SS+G+  +R E S+
Sbjct: 133 VNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQILV-SSDGVPITRIENSE 192

Query: 192 STNHHQLISGLQS-PAFRPS-NANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYS 251
           STN HQLIS ++S    RPS   N  +LKFG EAPLCESMETVL+LGDQKR  ++ SA  
Sbjct: 193 STN-HQLISSVESATTLRPSTTGNEVVLKFGSEAPLCESMETVLNLGDQKRYAEMSSANC 252

Query: 252 RDSPDEPSSCG----SSSMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVPQLVFP 311
           RD+ +EPSSCG    SSS   NE P+TV  +E   + GS+NE   P+++ CYPVP  VFP
Sbjct: 253 RDNGEEPSSCGSSMTSSSCRGNELPETVTQKELVGMPGSTNELNVPHSLHCYPVPPWVFP 312

Query: 312 LNQGGNGIVSSAMAKGSDG------TSISNPVQWLPATMLAVPGYCTPSLPLQFVAASYW 371
            N   N   S   A+ S G      ++ SN VQW P  +LAVP +C PS+PLQ V ASY 
Sbjct: 313 WNPNWNNATSITTAQHSTGQPCMPNSNNSNQVQWCPTPILAVPSFCPPSIPLQLVPASYL 372

Query: 372 GCTPVWTAAGVH---------ASQTSAATIGSCATSSSPTLGKHSRDASSSLTEEEESEK 431
           GC PVW A   +         +S +S+ +   C+ + SP LGKHSRDA  +L  EE+ E 
Sbjct: 373 GCMPVWGAGAGNISVNGSNGCSSPSSSTSTSCCSGNGSPKLGKHSRDA--NLMGEEQVEN 432

Query: 432 YVVVPKTVRVDKVSEGSRSPIWTT----------------FETTESNADGKEHYREAPHL 446
            V+VPKT+R+D  +E S+SP+W T                F+T+E+  +GK H  E+ H+
Sbjct: 433 CVLVPKTLRIDDPNEASKSPLWATLGLKLDQKNPASKGTIFKTSETKEEGKGHVPESAHI 490

[Close]

BLAST of Cp4.1LG08g06830 vs. TrEMBL
Match: A0A067KTT6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02656 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 2.8e-107
Identity = 234/487 (48.05%), Postives = 302/487 (62.01%), Query Frame = 1


Query: 12  PHFKDLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEH--------------CVSGA- 71
           P  KD AIKLFGR IP+P++ I +     + C+   +GE+                SG  
Sbjct: 7   PISKDPAIKLFGRKIPVPDTQIPSK----NSCSGITKGENDTIHEDNSRELDKSTASGQS 66

Query: 72  -EDSRSSVLVRDDEQKQASKEEEVHFKEQQGDGNEERVLKKPDKIIPCPRCNSLQTKFCY 131
            ED R+ + V + ++   SKE++V    +    ++E++ KKPDKI+PCPRCNSL TKFCY
Sbjct: 67  QEDKRTPMQVNEPQKTSKSKEDQV----ETNSVDQEKIFKKPDKILPCPRCNSLDTKFCY 126

Query: 132 FNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSR 191
           FNNYNVNQPRHFCKNCQRYWTAGGT+RN+PIGAGRR+NK L SQYR I++ SSEG+  SR
Sbjct: 127 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQILV-SSEGVPISR 186

Query: 192 FEPSDSTNHHQLISGLQS-PAFRPS-NANATLLKFGPEAPLCESMETVLSLGDQKRSIQI 251
            E SDS    QLIS ++S    +PS   N  +LKFGPEAPLCESMETVL+LGDQKR  ++
Sbjct: 187 MENSDS-GSQQLISSVESATTLKPSTTGNGMVLKFGPEAPLCESMETVLNLGDQKRYAEM 246

Query: 252 GSAYSRDSPDEPSSCGS----SSMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVP 311
            S    D+ +EPSSCGS    SS   NE  +TV  +E   L GSS +    + V CYPVP
Sbjct: 247 SSVKCLDNVEEPSSCGSSMTASSSRGNELSETVAQKEQVGLVGSSTDLNVAHPVHCYPVP 306

Query: 312 QLVFPLNQGGNGIVSSAMAKGSDG------TSISNPVQWLPATMLAVPGYCTPSLPLQFV 371
             V P N G N   S+  A+ S G      ++ SN VQW P  +LAVPG+C PS+PL FV
Sbjct: 307 PWVLPWNPGWNNATSTTAAQSSAGQPCTPNSNTSNQVQWCPTPILAVPGFCPPSIPLHFV 366

Query: 372 AASYWGCTPVWTAAGVH---------ASQTSAATIGSCATSSSPTLGKHSRDASSSLTEE 431
            ASYWGC PVWTA   +         +S +S+A    C+ + SP LGKHSRD  S L +E
Sbjct: 367 PASYWGCMPVWTAGKGNLSLSGSKGCSSPSSSANPSCCSGNGSPNLGKHSRD--SDLMDE 426

Query: 432 EESEKYVVVPKTVRVDKVSEGSRSPIW----------------TTFETTESNADGKEHYR 446
           +++EK ++VPKT+R+D  +E  +SP+W                T F+T E+ A GK H  
Sbjct: 427 DKAEKCILVPKTLRIDDPNEALKSPLWATLGLSLDQKNHVSKGTVFKTCEAKAQGKGHGP 481

[Close]

BLAST of Cp4.1LG08g06830 vs. TrEMBL
Match: A0A061F7F7_THECC (Cycling DOF factor 2, putative isoform 1 OS=Theobroma cacao GN=TCM_025807 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 8.2e-107
Identity = 227/473 (47.99%), Postives = 295/473 (62.37%), Query Frame = 1


Query: 16  DLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEHCVSGAEDSRSSVLVRDDEQKQAS- 75
           D A KLFGR I +PE  I A   + +  N   E  +  +  +  +S  +  D E+ Q S 
Sbjct: 5   DPAFKLFGRKIAVPEPQIHAGDTSSEITNPETETSYTNTSGDPDKSITVENDKEEHQTSM 64

Query: 76  KEEEVH----FKEQQGD---GNEERVLKKPDKIIPCPRCNSLQTKFCYFNNYNVNQPRHF 135
           K  E+      KE+Q +    ++E+V KKPDK++PCPRCNSL TKFCYFNNYNVNQPRHF
Sbjct: 65  KSNEIQTNSKLKEEQSETDSADQEKVFKKPDKVLPCPRCNSLDTKFCYFNNYNVNQPRHF 124

Query: 136 CKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRFEPSDSTNHHQL 195
           CKNCQRYWTAGGT+RN+PIGAGRR+NK L SQYR II+ SS+G+  +R E  DS N   L
Sbjct: 125 CKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIV-SSDGVPMTRIETPDSANQQLL 184

Query: 196 ISGLQSPAFRPSNANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYSRDSPDEPSS 255
             G  + AFRPS  N T+LKFG EAPLCESMETVLSLGDQKRS+++G+    +  +EPSS
Sbjct: 185 PPGESTTAFRPSMGNGTVLKFGAEAPLCESMETVLSLGDQKRSVEMGTVSCGEIREEPSS 244

Query: 256 CGSS----SMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVPQLVFPLNQGGNGIV 315
           CGSS    S+  N  P  V+ +E   L+G  NE  + +  +CYP+P  +FP N G N + 
Sbjct: 245 CGSSATPCSIPGNHLPGNVMQKERVGLAG-PNEQITQHPPQCYPIPPWIFPWNPGMNNVA 304

Query: 316 SSAMAKGSD------GTSISNPVQWLPATMLAVPGYCTPSLPLQFVAASYWGCTPVWTAA 375
             A+ + S        +S SN VQW P  M+AVPG+C P++PLQFV A YWGC P+W A+
Sbjct: 305 PMAVGQSSSERIGALNSSTSNAVQWCPTPMMAVPGFCPPNVPLQFVPA-YWGCMPLWAAS 364

Query: 376 GVHAS--------QTSAATIGSCAT-SSSPTLGKHSRDASSSLTEEEESEKYVVVPKTVR 435
           G + S          S++T  SC + + SP LGKHSR+ +     EE+SEK V+VPKT+R
Sbjct: 365 GGNVSFSGSNGCLSPSSSTSNSCCSGNGSPRLGKHSRETN---FVEEQSEKCVLVPKTLR 424

Query: 436 VDKVSEGSRSPIWTT----------------FETTESNADGKEHYREAPHLLE 446
           +D  +E SRSPIW T                F   +S A+GK+H  +  H+LE
Sbjct: 425 IDDPNEASRSPIWATLGIKPDQKDPLRRGKIFNAFDSKAEGKDHLLDGSHILE 471

[Close]

BLAST of Cp4.1LG08g06830 vs. TrEMBL
Match: A0A0D2PI72_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G252700 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.8e-101
Identity = 229/487 (47.02%), Postives = 303/487 (62.22%), Query Frame = 1


Query: 16  DLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEHCVSGAEDSRSSVLVRDDE--QKQA 75
           D A KLFGR IP+ E  I A     D C     GE    G E S+++   + D+  + + 
Sbjct: 5   DPAFKLFGRKIPVLEPQIHAG----DTC-----GEETNPGTETSQTNTSGKPDKSIRVEN 64

Query: 76  SKEE----------EVHFKEQQGDGN---EERVLKKPDKIIPCPRCNSLQTKFCYFNNYN 135
            KEE          +++ K++Q + N   +E V KKPDKI+PCPRCNSL TKFCYFNNYN
Sbjct: 65  GKEEVQTCMKLDEVQINPKDEQPETNRTDQEIVFKKPDKILPCPRCNSLDTKFCYFNNYN 124

Query: 136 VNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRFEPSD 195
           VNQPRHFCKNCQRYWTAGGT+RN+PIGAGRR+NK L SQYR II+ SS+G+  ++ E  D
Sbjct: 125 VNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLTSQYRQIIV-SSDGVPMTQIETPD 184

Query: 196 STNHHQLISGLQS-PAFRPSNANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYSR 255
           S N  QL+S  +S  AF+PS  N T+LKFG EAPLCESMET LSLG+QKR ++ G     
Sbjct: 185 SAN--QLVSPCESTAAFKPSMGNGTVLKFGAEAPLCESMETALSLGEQKRCVETGMVSCG 244

Query: 256 DSPDEPSSCGSS----SMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVPQLVFPL 315
           ++  EPSSCGSS    S+  NEFP  V+ +E   ++G ++ NT  +  +CYPVP  VFP 
Sbjct: 245 ETRKEPSSCGSSVAPCSIRGNEFPGHVMQKERIGVTGPNDRNTQ-HLPQCYPVPPWVFPW 304

Query: 316 NQGGNGIVSSAMAKGSD------GTSISNPV-QWLPATMLAVPGYCTPSLPLQFVAASYW 375
           NQ  N +   A  + S        +S SN V QW P  ++AVPG+C P++P+QFV A YW
Sbjct: 305 NQSPNNVAPVAAVQCSSDRISAPNSSTSNVVPQWCPTPLVAVPGFCPPNIPVQFVPA-YW 364

Query: 376 GCTPVWTAAGVHA---------SQTSAATIGSCATSSSPTLGKHSRDASSSLTEEEESEK 435
           GC P+WT +G +          S +S+ +  SC+ + SPTLGKHSR+A  +  EEE+ EK
Sbjct: 365 GCMPLWTTSGGNVSFSGSNGCLSPSSSTSNSSCSGNVSPTLGKHSREA--NFVEEEKPEK 424

Query: 436 YVVVPKTVRVDKVSEGSRSPIWTT---------------FETTESNADGKEHYREAPHLL 452
            ++VPKT+R+D  +E SRSPIW T               F++ ES A+G++H  +  H+L
Sbjct: 425 CILVPKTLRMDDPNEASRSPIWATLGIRPAQKDPLQGKDFDSFESKAEGQDHIPDGNHIL 475

[Close]

BLAST of Cp4.1LG08g06830 vs. TAIR10
Match: AT3G47500.1 (AT3G47500.1 cycling DOF factor 3)

HSP 1 Score: 185.7 bits (470), Expect = 6.5e-47
Identity = 146/440 (33.18%), Postives = 206/440 (46.82%), Query Frame = 1


Query: 15  KDLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGE-----------------HCVSGA- 74
           +D AIKLFG  IP P    SA     D  + +  G+                 +C   + 
Sbjct: 6   RDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSF 65

Query: 75  EDSRSSVLVRDDEQKQASKEEEVHFKEQQGDGNEERVLKKPDKIIPCPRCNSLQTKFCYF 134
            +S+   L +++       E     ++ Q    + + LKKP KI+PCPRC S++TKFCY+
Sbjct: 66  NNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDGKTLKKPTKILPCPRCKSMETKFCYY 125

Query: 135 NNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRF 194
           NNYN+NQPRHFCK CQRYWTAGGT+RN+P+GAGRR+NK   S YR I +  SE L  +R 
Sbjct: 126 NNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITI--SEALEAARL 185

Query: 195 EPSDSTNHHQLISGLQSPAFRPSNANATLLKFGPEAPLCESMETVL-SLGDQKRSIQIGS 254
           +P    N   L  GL++     +     ++K   +  +          L DQ+   ++  
Sbjct: 186 DPGLQANTRVLSFGLEAQQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARV-- 245

Query: 255 AYSRDSPDEPSSCGSSSMTTNEFPKTVVDREAARLSGS-------SNENTSPNTVRCYPV 314
               ++ D+ SS GSS  T+N      VD   A+ SGS       +N N + N   C P 
Sbjct: 246 ----ENGDDCSS-GSSVTTSNNHS---VDESRAQ-SGSVVEAQMNNNNNNNMNGYACIP- 305

Query: 315 PQLVFPLNQGGNGIVSSAMAKGSDGTSISNPVQWLPATMLAVPG-YCTPSLPLQFVAASY 374
                                      +  P  W PA  +  PG Y  P  P+ F     
Sbjct: 306 --------------------------GVPWPYTWNPA--MPPPGFYPPPGYPMPFY---- 365

Query: 375 WGCTPVWTAAGVHASQTSAATIGSCATSSSPTLGKHSRDASSSLTEEEESEKY----VVV 424
               P WT   +   Q+S+     C+ ++SPTLGKH RD  SS  + E   K     V+V
Sbjct: 366 ----PYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQKAGCVLV 395

[Close]

BLAST of Cp4.1LG08g06830 vs. TAIR10
Match: AT5G39660.1 (AT5G39660.1 cycling DOF factor 2)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-38
Identity = 134/388 (34.54%), Postives = 182/388 (46.91%), Query Frame = 1


Query: 61  SSVLVRDDEQKQASKEEEVHFKEQQGDG-NEERVLKKPDKIIPCPRCNSLQTKFCYFNNY 120
           +S +    E  +A+K  E    E  G   ++E  LKKPDKI+PCPRCNS++TKFCY+NNY
Sbjct: 101 TSGITEKTETTKAAKTNE----ESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNY 160

Query: 121 NVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQY-RPIILSSSEGLATSRFEP 180
           NVNQPRHFCK CQRYWTAGGT+RN+P+GAGRR+NK   S Y R + ++S+E  A  +   
Sbjct: 161 NVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPASHYNRHVSITSAE--AMQKVAR 220

Query: 181 SDSTNHHQLISGLQSPAFRPSNANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYS 240
           +D          LQ P        A LL FG ++ LCESM + L+L ++     + +   
Sbjct: 221 TD----------LQHP------NGANLLTFGSDSVLCESMASGLNLVEKS---LLKTQTV 280

Query: 241 RDSPDEPSSCGSSSMTTNEFPKTVVDREAARLSGSSNENTSP-NTVRCYPVPQLVFPLNQ 300
              P+E          TNE   TV                SP   V C+P P   +P   
Sbjct: 281 LQEPNEGLKITVPLNQTNEEAGTV----------------SPLPKVPCFPGPPPTWPYAW 340

Query: 301 GGNGIVSSAMAKGSDGTSISNPVQWLPATMLAVPGYCTPSLPLQFVAASYWGCTPVWTAA 360
            G                    V W       +P Y  P         +YW C  V   A
Sbjct: 341 NG--------------------VSW-----TILPFYPPP---------AYWSCPGVSPGA 400

Query: 361 GVHASQTSAATIGSCATSSSPTLGKHSRDASSSL------------TEEEESEKYVVVPK 420
               +        S +  +SPTLGKHSRD +++              E+ + E+ + VPK
Sbjct: 401 WNSFTWMPQPNSPSGSNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPK 413

Query: 421 TVRVDKVSEGSRSPIWTTFE-TTESNAD 433
           T+R+D   E ++S IW T     + NAD
Sbjct: 461 TLRIDDPEEAAKSSIWETLGIKKDENAD 413

[Close]

BLAST of Cp4.1LG08g06830 vs. TAIR10
Match: AT1G26790.1 (AT1G26790.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-30
Identity = 80/190 (42.11%), Postives = 106/190 (55.79%), Query Frame = 1


Query: 15  KDLAIKLFGRTIP-------------LPESNISAALQNLDGCNHFKEGEHCVSGAEDSRS 74
           +D  +KLFG TI              LP+S+ S++  +L    H    +          S
Sbjct: 35  RDTPVKLFGWTITPVSHDPYSSSSHVLPDSSSSSSSSSLSLRPHMMNNQSVTDNTSLKLS 94

Query: 75  SVLVRDDEQKQASKEEEVHFKEQQGDGNEERV---LKKPDKIIPCPRCNSLQTKFCYFNN 134
           S L  ++E K+ S+  +    E     +EE     LKKPDKI+PCPRCNS  TKFCY+NN
Sbjct: 95  SNL--NNESKETSENSDDQHSEITTITSEEEKTTELKKPDKILPCPRCNSADTKFCYYNN 154

Query: 135 YNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPS--QYRPIILSSSEGLATS-- 182
           YNVNQPRHFC+ CQRYWTAGG++R +P+G+GRR+NK   S  QY  I    ++   +S  
Sbjct: 155 YNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGWVSSDQYLHITSEDTDNYNSSST 214

[Close]

BLAST of Cp4.1LG08g06830 vs. TAIR10
Match: AT5G62430.1 (AT5G62430.1 cycling DOF factor 1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-30
Identity = 67/147 (45.58%), Postives = 96/147 (65.31%), Query Frame = 1


Query: 73  ASKEEEVHFKEQQGDGNE-ERVLKKPDKIIPCPRCNSLQTKFCYFNNYNVNQPRHFCKNC 132
           A +EEE +  +   D +E ++ LKKP KI+PCPRCNS++TKFCY+NNYNVNQPRHFCK C
Sbjct: 25  ADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKAC 84

Query: 133 QRYWTAGGTIRNLPIGAGRRRNK--QLPSQYRPIILSSSEG------LATSRFEPSDSTN 192
           QRYWT+GGT+R++PIGAGRR+NK     S Y  + +S + G      L   +   S+   
Sbjct: 85  QRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISETNGPVLSFSLGDDQKVSSNRFG 144

Query: 193 HHQLISGLQSPAFRPSNANATLLKFGP 211
           + +L++ +++   R +N  +  L   P
Sbjct: 145 NQKLVARIENNDERSNNNTSNGLNCFP 171

[Close]

BLAST of Cp4.1LG08g06830 vs. TAIR10
Match: AT1G69570.1 (AT1G69570.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-30
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 88  GNEERVLKKPDKIIPCPRCNSLQTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIG 147
           G +   LKKPDK+IPCPRC S  TKFCY+NNYNVNQPR+FC+NCQRYWTAGG++RN+P+G
Sbjct: 119 GEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVG 178

Query: 148 AGRRRNKQLPSQYRPIILSSSE 170
           +GRR+NK  PS    + ++S +
Sbjct: 179 SGRRKNKGWPSSNHYLQVTSED 200

[Close]

BLAST of Cp4.1LG08g06830 vs. NCBI nr
Match: gi|449438006|ref|XP_004136781.1| (PREDICTED: cyclic dof factor 3-like [Cucumis sativus])

HSP 1 Score: 608.6 bits (1568), Expect = 8.9e-171
Identity = 333/500 (66.60%), Postives = 383/500 (76.60%), Query Frame = 1


Query: 2   SSATHHLLSAPHFKDLAIKLFGRTIPLPESNISAA-LQNLDGCNHFKEGEHCVSGAEDS- 61
           SS T  ++S PHFKDLAIKLFGRTIPLPES ISAA L N D CN+ K+ E  VSGAEDS 
Sbjct: 3   SSTTQDVISPPHFKDLAIKLFGRTIPLPESQISAAPLHNPDACNNLKKAEQSVSGAEDSC 62

Query: 62  ---RSSVLVRDDEQKQASK------EEEVHFKEQQGDGN---EERVLKKPDKIIPCPRCN 121
              RSSVLV D+E+ QAS       E E+H KE+Q DGN   +ER  KKPDKIIPCPRCN
Sbjct: 63  PSERSSVLVGDNEENQASNVTSNKGESELHLKEEQEDGNGTDQERAFKKPDKIIPCPRCN 122

Query: 122 SLQTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSS 181
           SL+TKFCYFNNYNVNQPRHFCKNCQRYWTAGGT+RN+PIGAGRRRNKQL SQYR II+ S
Sbjct: 123 SLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNKQLASQYRQIIV-S 182

Query: 182 SEGLATSRFEPSDSTNHHQLISGLQSP-AFRPSNANATLLKFGPEAPLCESMETVLSLGD 241
           SEG+AT+R E SD+TNHH L+S ++SP A RPSN ++T+LKFGPEAPLCESMETVLSLGD
Sbjct: 183 SEGVATTRLETSDATNHHHLLSNIESPSALRPSNGSSTVLKFGPEAPLCESMETVLSLGD 242

Query: 242 QKRSIQIGSAYSRDSPDEPSSCGSSSMTT----NEFPKTVVDR-EAARLSGSSNENTSPN 301
           QKRSI+IGSAY  DSP+EPSSCGSS  TT    NE PK+V++R EA RLS SS++ T+ N
Sbjct: 243 QKRSIEIGSAYCGDSPEEPSSCGSSMTTTSIRGNELPKSVIERPEAVRLSNSSSDITASN 302

Query: 302 TVRCYPVPQLVFPLNQGGNGIVSSAMAKGSDGTSISN-------PVQWLPATMLAVPGYC 361
           TV CYPVPQLVFPLNQGG+ ++SSAM + SD TS+ N       PVQWLPAT+LAVPG+C
Sbjct: 303 TVHCYPVPQLVFPLNQGGSSLISSAMTQSSDSTSVPNTSSHPNPPVQWLPATVLAVPGFC 362

Query: 362 TPSLPLQFVAASYWGCTPVWTAAG-----VHASQTSAATIGSCATSSSPTLGKHSRDASS 421
           TPSLPLQFV AS WGCTPVWT+ G     V  S   A+   +C TSSSPTLGKH RD ++
Sbjct: 363 TPSLPLQFVPASCWGCTPVWTSTGTGNLTVVPSDVCASQTSTCPTSSSPTLGKHLRD-TN 422

Query: 422 SLTEEEESEKYVVVPKTVRVDKVSEGSRSPIWTT----------------FETTE-SNAD 453
           SL E+E+SEK VVVPKT+RVD  SE SRSPIWTT                FET+E +NAD
Sbjct: 423 SLAEDEKSEKCVVVPKTLRVDNPSEASRSPIWTTFGIHPYPKENISKGSVFETSETTNAD 482

[Close]

BLAST of Cp4.1LG08g06830 vs. NCBI nr
Match: gi|659085199|ref|XP_008443297.1| (PREDICTED: cyclic dof factor 3-like [Cucumis melo])

HSP 1 Score: 606.3 bits (1562), Expect = 4.4e-170
Identity = 332/500 (66.40%), Postives = 382/500 (76.40%), Query Frame = 1


Query: 2   SSATHHLLSAPHFKDLAIKLFGRTIPLPESNISAA-LQNLDGCNHFKEGEHCVSGAEDS- 61
           S+ T  ++S PHFKDLAIKLFGRTIPLPES ISAA L N D CN+ K+ E  VSGAEDS 
Sbjct: 4   STTTQDVISPPHFKDLAIKLFGRTIPLPESQISAAPLHNPDACNNLKKAEQSVSGAEDSC 63

Query: 62  ---RSSVLVRDDEQKQASK------EEEVHFKEQQGDGN---EERVLKKPDKIIPCPRCN 121
              RSSVLV D+E+ QAS       E E+H KE+Q DGN   +ER  KKPDKIIPCPRCN
Sbjct: 64  PSERSSVLVGDNEENQASNVMSNKGESELHLKEEQADGNGTDQERAFKKPDKIIPCPRCN 123

Query: 122 SLQTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSS 181
           SL+TKFCYFNNYNVNQPRHFCKNCQRYWTAGGT+RN+PIGAGRRRNKQL SQYR II+ S
Sbjct: 124 SLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNKQLASQYRQIIV-S 183

Query: 182 SEGLATSRFEPSDSTNHHQLISGLQS-PAFRPSNANATLLKFGPEAPLCESMETVLSLGD 241
           SEG+AT+R E SD+TNHH L+S ++S PA RPSN ++T+LKFGPEAPLCESMETVLSLGD
Sbjct: 184 SEGVATARLETSDATNHHHLLSSVESPPALRPSNGSSTVLKFGPEAPLCESMETVLSLGD 243

Query: 242 QKRSIQIGSAYSRDSPDEPSSCGSSSMTT----NEFPKTVVDR-EAARLSGSSNENTSPN 301
           QKRSI+IGSAY  DSP+EPSSCGSS  TT    NE  K+V++R EA RLS SS++ T+ N
Sbjct: 244 QKRSIEIGSAYCGDSPEEPSSCGSSMTTTSIRGNELSKSVIERPEAVRLSNSSSDITASN 303

Query: 302 TVRCYPVPQLVFPLNQGGNGIVSSAMAKGSDGTSISN-------PVQWLPATMLAVPGYC 361
           TV CYPVPQLVFPLNQGG+ ++SSAM + SD TS+ N       PVQWLPATMLAVPG+C
Sbjct: 304 TVHCYPVPQLVFPLNQGGSSLISSAMTQSSDSTSVPNISSHPNPPVQWLPATMLAVPGFC 363

Query: 362 TPSLPLQFVAASYWGCTPVWTAAG-----VHASQTSAATIGSCATSSSPTLGKHSRDASS 421
           TPSLPLQFV AS WGCTPVWT+ G     V  S   A+   +C TSSSPTLGKH RD ++
Sbjct: 364 TPSLPLQFVPASCWGCTPVWTSTGTGNLTVVPSDVCASQTSTCPTSSSPTLGKHLRD-TN 423

Query: 422 SLTEEEESEKYVVVPKTVRVDKVSEGSRSPIWTT----------------FETTE-SNAD 453
           SL E+E+SEK VVVPKT+RVD  SE SRSPIWTT                FET+E +NAD
Sbjct: 424 SLAEDEKSEKCVVVPKTLRVDNPSEASRSPIWTTFGIHPYPKENISKGSVFETSETTNAD 483

[Close]

BLAST of Cp4.1LG08g06830 vs. NCBI nr
Match: gi|255569414|ref|XP_002525674.1| (PREDICTED: cyclic dof factor 1 [Ricinus communis])

HSP 1 Score: 403.7 bits (1036), Expect = 4.3e-109
Identity = 236/482 (48.96%), Postives = 307/482 (63.69%), Query Frame = 1


Query: 12  PHFKDLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEHCV-----SGAEDSRSSVLVR 71
           P  KD A KLFGR IP+P++ I A  +  + CN   +GE  +     +G +D  S+    
Sbjct: 13  PQSKDPAFKLFGRKIPVPDTQIPAKPEFKNSCNDSIKGETDIYDEDNTGEQDKLSATGQT 72

Query: 72  DDEQ---KQASKEEEVHFKEQQGDGN---EERVLKKPDKIIPCPRCNSLQTKFCYFNNYN 131
            +E+   KQ ++E +   K+ Q + N   +E+V KKPDKI+PCPRCNSL TKFCYFNNYN
Sbjct: 73  KEERQTPKQVNEEAQSGPKDDQVETNSTDQEKVFKKPDKILPCPRCNSLDTKFCYFNNYN 132

Query: 132 VNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRFEPSD 191
           VNQPRHFCKNCQRYWTAGGT+RN+PIGAGRR+NK L SQYR I++ SS+G+  +R E S+
Sbjct: 133 VNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQILV-SSDGVPITRIENSE 192

Query: 192 STNHHQLISGLQS-PAFRPS-NANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYS 251
           STN HQLIS ++S    RPS   N  +LKFG EAPLCESMETVL+LGDQKR  ++ SA  
Sbjct: 193 STN-HQLISSVESATTLRPSTTGNEVVLKFGSEAPLCESMETVLNLGDQKRYAEMSSANC 252

Query: 252 RDSPDEPSSCG----SSSMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVPQLVFP 311
           RD+ +EPSSCG    SSS   NE P+TV  +E   + GS+NE   P+++ CYPVP  VFP
Sbjct: 253 RDNGEEPSSCGSSMTSSSCRGNELPETVTQKELVGMPGSTNELNVPHSLHCYPVPPWVFP 312

Query: 312 LNQGGNGIVSSAMAKGSDG------TSISNPVQWLPATMLAVPGYCTPSLPLQFVAASYW 371
            N   N   S   A+ S G      ++ SN VQW P  +LAVP +C PS+PLQ V ASY 
Sbjct: 313 WNPNWNNATSITTAQHSTGQPCMPNSNNSNQVQWCPTPILAVPSFCPPSIPLQLVPASYL 372

Query: 372 GCTPVWTAAGVH---------ASQTSAATIGSCATSSSPTLGKHSRDASSSLTEEEESEK 431
           GC PVW A   +         +S +S+ +   C+ + SP LGKHSRDA  +L  EE+ E 
Sbjct: 373 GCMPVWGAGAGNISVNGSNGCSSPSSSTSTSCCSGNGSPKLGKHSRDA--NLMGEEQVEN 432

Query: 432 YVVVPKTVRVDKVSEGSRSPIWTT----------------FETTESNADGKEHYREAPHL 446
            V+VPKT+R+D  +E S+SP+W T                F+T+E+  +GK H  E+ H+
Sbjct: 433 CVLVPKTLRIDDPNEASKSPLWATLGLKLDQKNPASKGTIFKTSETKEEGKGHVPESAHI 490

[Close]

BLAST of Cp4.1LG08g06830 vs. NCBI nr
Match: gi|802585322|ref|XP_012070363.1| (PREDICTED: cyclic dof factor 3-like [Jatropha curcas])

HSP 1 Score: 397.1 bits (1019), Expect = 4.0e-107
Identity = 234/487 (48.05%), Postives = 302/487 (62.01%), Query Frame = 1


Query: 12  PHFKDLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEH--------------CVSGA- 71
           P  KD AIKLFGR IP+P++ I +     + C+   +GE+                SG  
Sbjct: 7   PISKDPAIKLFGRKIPVPDTQIPSK----NSCSGITKGENDTIHEDNSRELDKSTASGQS 66

Query: 72  -EDSRSSVLVRDDEQKQASKEEEVHFKEQQGDGNEERVLKKPDKIIPCPRCNSLQTKFCY 131
            ED R+ + V + ++   SKE++V    +    ++E++ KKPDKI+PCPRCNSL TKFCY
Sbjct: 67  QEDKRTPMQVNEPQKTSKSKEDQV----ETNSVDQEKIFKKPDKILPCPRCNSLDTKFCY 126

Query: 132 FNNYNVNQPRHFCKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSR 191
           FNNYNVNQPRHFCKNCQRYWTAGGT+RN+PIGAGRR+NK L SQYR I++ SSEG+  SR
Sbjct: 127 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQILV-SSEGVPISR 186

Query: 192 FEPSDSTNHHQLISGLQS-PAFRPS-NANATLLKFGPEAPLCESMETVLSLGDQKRSIQI 251
            E SDS    QLIS ++S    +PS   N  +LKFGPEAPLCESMETVL+LGDQKR  ++
Sbjct: 187 MENSDS-GSQQLISSVESATTLKPSTTGNGMVLKFGPEAPLCESMETVLNLGDQKRYAEM 246

Query: 252 GSAYSRDSPDEPSSCGS----SSMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVP 311
            S    D+ +EPSSCGS    SS   NE  +TV  +E   L GSS +    + V CYPVP
Sbjct: 247 SSVKCLDNVEEPSSCGSSMTASSSRGNELSETVAQKEQVGLVGSSTDLNVAHPVHCYPVP 306

Query: 312 QLVFPLNQGGNGIVSSAMAKGSDG------TSISNPVQWLPATMLAVPGYCTPSLPLQFV 371
             V P N G N   S+  A+ S G      ++ SN VQW P  +LAVPG+C PS+PL FV
Sbjct: 307 PWVLPWNPGWNNATSTTAAQSSAGQPCTPNSNTSNQVQWCPTPILAVPGFCPPSIPLHFV 366

Query: 372 AASYWGCTPVWTAAGVH---------ASQTSAATIGSCATSSSPTLGKHSRDASSSLTEE 431
            ASYWGC PVWTA   +         +S +S+A    C+ + SP LGKHSRD  S L +E
Sbjct: 367 PASYWGCMPVWTAGKGNLSLSGSKGCSSPSSSANPSCCSGNGSPNLGKHSRD--SDLMDE 426

Query: 432 EESEKYVVVPKTVRVDKVSEGSRSPIW----------------TTFETTESNADGKEHYR 446
           +++EK ++VPKT+R+D  +E  +SP+W                T F+T E+ A GK H  
Sbjct: 427 DKAEKCILVPKTLRIDDPNEALKSPLWATLGLSLDQKNHVSKGTVFKTCEAKAQGKGHGP 481

[Close]

BLAST of Cp4.1LG08g06830 vs. NCBI nr
Match: gi|590640394|ref|XP_007029942.1| (Cycling DOF factor 2, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106
Identity = 227/473 (47.99%), Postives = 295/473 (62.37%), Query Frame = 1


Query: 16  DLAIKLFGRTIPLPESNISAALQNLDGCNHFKEGEHCVSGAEDSRSSVLVRDDEQKQAS- 75
           D A KLFGR I +PE  I A   + +  N   E  +  +  +  +S  +  D E+ Q S 
Sbjct: 5   DPAFKLFGRKIAVPEPQIHAGDTSSEITNPETETSYTNTSGDPDKSITVENDKEEHQTSM 64

Query: 76  KEEEVH----FKEQQGD---GNEERVLKKPDKIIPCPRCNSLQTKFCYFNNYNVNQPRHF 135
           K  E+      KE+Q +    ++E+V KKPDK++PCPRCNSL TKFCYFNNYNVNQPRHF
Sbjct: 65  KSNEIQTNSKLKEEQSETDSADQEKVFKKPDKVLPCPRCNSLDTKFCYFNNYNVNQPRHF 124

Query: 136 CKNCQRYWTAGGTIRNLPIGAGRRRNKQLPSQYRPIILSSSEGLATSRFEPSDSTNHHQL 195
           CKNCQRYWTAGGT+RN+PIGAGRR+NK L SQYR II+ SS+G+  +R E  DS N   L
Sbjct: 125 CKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIV-SSDGVPMTRIETPDSANQQLL 184

Query: 196 ISGLQSPAFRPSNANATLLKFGPEAPLCESMETVLSLGDQKRSIQIGSAYSRDSPDEPSS 255
             G  + AFRPS  N T+LKFG EAPLCESMETVLSLGDQKRS+++G+    +  +EPSS
Sbjct: 185 PPGESTTAFRPSMGNGTVLKFGAEAPLCESMETVLSLGDQKRSVEMGTVSCGEIREEPSS 244

Query: 256 CGSS----SMTTNEFPKTVVDREAARLSGSSNENTSPNTVRCYPVPQLVFPLNQGGNGIV 315
           CGSS    S+  N  P  V+ +E   L+G  NE  + +  +CYP+P  +FP N G N + 
Sbjct: 245 CGSSATPCSIPGNHLPGNVMQKERVGLAG-PNEQITQHPPQCYPIPPWIFPWNPGMNNVA 304

Query: 316 SSAMAKGSD------GTSISNPVQWLPATMLAVPGYCTPSLPLQFVAASYWGCTPVWTAA 375
             A+ + S        +S SN VQW P  M+AVPG+C P++PLQFV A YWGC P+W A+
Sbjct: 305 PMAVGQSSSERIGALNSSTSNAVQWCPTPMMAVPGFCPPNVPLQFVPA-YWGCMPLWAAS 364

Query: 376 GVHAS--------QTSAATIGSCAT-SSSPTLGKHSRDASSSLTEEEESEKYVVVPKTVR 435
           G + S          S++T  SC + + SP LGKHSR+ +     EE+SEK V+VPKT+R
Sbjct: 365 GGNVSFSGSNGCLSPSSSTSNSCCSGNGSPRLGKHSRETN---FVEEQSEKCVLVPKTLR 424

Query: 436 VDKVSEGSRSPIWTT----------------FETTESNADGKEHYREAPHLLE 446
           +D  +E SRSPIW T                F   +S A+GK+H  +  H+LE
Sbjct: 425 IDDPNEASRSPIWATLGIKPDQKDPLRRGKIFNAFDSKAEGKDHLLDGSHILE 471

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g06830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CDF3_ARATH	1.2e-45	33.18	Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2	[more]
CDF2_ARATH	2.6e-37	34.54	Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2	[more]
DOF13_ARATH	3.4e-29	42.11	Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=3 SV=1	[more]
CDF1_ARATH	7.5e-29	45.58	Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2	[more]
CDF5_ARATH	1.3e-28	63.41	Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1	[more]

BLAST of Cp4.1LG08g06830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBU4_CUCSA	6.2e-171	66.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822310 PE=4 SV=1	[more]
B9SI55_RICCO	3.0e-109	48.96	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320870 PE=4 SV=1	[more]
A0A067KTT6_JATCU	2.8e-107	48.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02656 PE=4 SV=1	[more]
A0A061F7F7_THECC	8.2e-107	47.99	Cycling DOF factor 2, putative isoform 1 OS=Theobroma cacao GN=TCM_025807 PE=4 S...	[more]
A0A0D2PI72_GOSRA	1.8e-101	47.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G252700 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g06830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47500.1	6.5e-47	33.18	cycling DOF factor 3	[more]
AT5G39660.1	1.5e-38	34.54	cycling DOF factor 2	[more]
AT1G26790.1	1.9e-30	42.11	Dof-type zinc finger DNA-binding family protein	[more]
AT5G62430.1	4.3e-30	45.58	cycling DOF factor 1	[more]
AT1G69570.1	7.3e-30	63.41	Dof-type zinc finger DNA-binding family protein	[more]

BLAST of Cp4.1LG08g06830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438006\|ref\|XP_004136781.1\|	8.9e-171	66.60	PREDICTED: cyclic dof factor 3-like [Cucumis sativus]	[more]
gi\|659085199\|ref\|XP_008443297.1\|	4.4e-170	66.40	PREDICTED: cyclic dof factor 3-like [Cucumis melo]	[more]
gi\|255569414\|ref\|XP_002525674.1\|	4.3e-109	48.96	PREDICTED: cyclic dof factor 1 [Ricinus communis]	[more]
gi\|802585322\|ref\|XP_012070363.1\|	4.0e-107	48.05	PREDICTED: cyclic dof factor 3-like [Jatropha curcas]	[more]
gi\|590640394\|ref\|XP_007029942.1\|	1.2e-106	47.99	Cycling DOF factor 2, putative isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g06830.1	Cp4.1LG08g06830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 94..154 score: 3.0
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 99..155 score: 2.4
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 103..139 scor
IPR003851	Zinc finger, Dof-type	PROFILE	PS50884	ZF_DOF_2	coord: 101..155 score: 2
None	No IPR available	PANTHER	PTHR31089	FAMILY NOT NAMED	coord: 6..424 score: 5.5E
None	No IPR available	PANTHER	PTHR31089:SF4	CYCLIC DOF FACTOR 2-RELATED	coord: 6..424 score: 5.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g06830	Cucsa.338050	Cucumber (Gy14) v1	cgycpeB0899
Cp4.1LG08g06830	CmaCh14G005330	Cucurbita maxima (Rimu)	cmacpeB295
Cp4.1LG08g06830	CmaCh06G009060	Cucurbita maxima (Rimu)	cmacpeB855
Cp4.1LG08g06830	CmoCh14G005340	Cucurbita moschata (Rifu)	cmocpeB258
Cp4.1LG08g06830	Cla002907	Watermelon (97103) v1	cpewmB836
Cp4.1LG08g06830	Csa3G822310	Cucumber (Chinese Long) v2	cpecuB853
Cp4.1LG08g06830	MELO3C009788	Melon (DHL92) v3.5.1	cpemeB800
Cp4.1LG08g06830	ClCG10G015930	Watermelon (Charleston Gray)	cpewcgB774
Cp4.1LG08g06830	CSPI03G38140	Wild cucumber (PI 183967)	cpecpiB855
Cp4.1LG08g06830	Lsi03G015770	Bottle gourd (USVL1VR-Ls)	cpelsiB710
Cp4.1LG08g06830	MELO3C009788.2	Melon (DHL92) v3.6.1	cpemedB941
Cp4.1LG08g06830	CsaV3_3G040560	Cucumber (Chinese Long) v3	cpecucB1050
Cp4.1LG08g06830	Bhi11G002370	Wax gourd	cpewgoB1081
Cp4.1LG08g06830	CsGy3G035610	Cucumber (Gy14) v2	cgybcpeB451

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g06830	Cp4.1LG03g08430	Cucurbita pepo (Zucchini)	cpecpeB486

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g06830	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g06830	Cucumber (Chinese Long) v3	cpecucB1058