Cp4.1LG08g06750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase subunit
LocationCp4.1LG08 : 129010 .. 131956 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTGATTGATAGAGGATCGGTTTGTGCTAGGACTTTGCGGATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGTACGTGTCTTACTTGGAGAATAGGGTATGTGACCAGGCCTGGAGTTGTTTATAACTTCCCTCTTTTTGCCTCTTAATTTCTTATGTGGTGATGCAAGGAGTGTATTCTCTTGATTCTACCATTCAGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGGTACACATCTTTTCATCATAGCTCTGTATATTTTTTTCTCCGTGCTCAGTTTTTTTTTTTTTTTTTTTTTTCAATTAATTTATACGTGATGGATTTAGGCAATAGATTTAATCATATAGATGAAGCATTGATTGACATTTACAATTGTACTAGTGTTTTTATATTGTATTATATGGTAATGGTAAGCCAAATTAGTGTGCAGTTATTTACTTCCAATAAATGTAAATTACAAAGGATCTTAGCCACCATATGGAAACAAGTAGATAAATGGAATCCCAATGACTGAAGTTGTAAGAGTTCTAGAGTGATTATAAAAATGACAAGGTCCTAAGTTTCTTACCTAGGAACGAAATCTTTTAAGACTCTTTGGCAAATTTTTCTTATCTTTAAGCCTAACGGATGTTAAAAAATGAAGTCCTTTAAGCCATTAGGCACAATGAACTTCTAAACAAAGAAAATTATGGAGTGTCAATTCTTCTTTCTCTCTACAAAGGACACACCAACTGAGCTAGAGCAACAATGAAAGCTTTGTCTTTCAGATAACATGGTTAGATTGACAGACGACATGAGGACTGTGCACATTTGGGGAACCTTAGACTTCTAAATTATCTTACACAACTTCATTGGGATAATGTCCTGTTTAGGGACAATTGATTAGTAATGATAGTTGACACGCAAAAGCCCTGTAGTAGTGAGGCTTCTTATTTTAGAATTGTAGTTGAGGGAATCATAGATGATATGTAAAGGGCTATCACTCCTCAATTTAGCTGTAGAAAAGCTTTCTTCTAAACCTCAAATTAAAAGGATATCCTTATCCACACGTCTTTGGTTGAAATGCCCTTAGGTAAGGGGTTTGTTGGAAGAGTGGTTATAAATTGGACGGGTTGGGGGGAGGAATCGTTGGAAAATAGTTTGTGGGAGAGATACCTTTTGCATAAGAATATTACACAATACTTTCAGTCCTATCTTCATATTTTCGAATTTCAAACTCCATCTTGAACCTTTTTAAGACCTGACAGAAGCACACCTTCATCCAGCTGAAAAGTAGCACTTTGTTTGACAAGGGGGCTAACTTTTCAGCGGACTTCCAAGGGCCTTTACCCATAGAGCATTAGAGGAACCCAAAATGAACTGACCAGAATAATCTCTCCCATAGTCCCATTTTTTACTTGTAATAGTTTGTGCTAAAGAAATTTGGGTCTCTAGCCCCCAAAAGATTCAATCCCTCCTGTTTAATATTACCAACATTTAACCGTCTATTTGGTAGGCATAGGAGACCATGTTTCATGTAACCATATGTCTACCAAATTTGGCAATCAAACTCTCCTAGAGGAAGTTTTAGACGTAGATCTCAATTGTCGCAGCAACTTCATACCGTAAACGCTGAAAGATAATGCCGGAGAAAATCAATGAAGGCCAGTTGAGCCAACTCAAGACCCTTCCCTTGGGGGTTTCATTCCACTTCATCAACTCAGAAAGATTCATTCTTGCCTTGATAAATTTATTGAAAGTCGAAAAAGTAAATTAAAAAGCTTCTGAATATTTAGGAGGTTGGTGATTTTAAAGATTCTAGACACAATATTATCTGCTACGTTCAATGAGTGGGATGAAACATGAATCTTAACTTCCTTAAGAACCAAAGCTTCAATAATTTCCATCTTCATACCCAAGGAGGGAAATCTGTTCAAACACTCCACCAATAAGATACACCAATAGAATCAAGTCAAGGAAATTTCAGCCCACTTTATTGTAAGCATTCTCCTGATCAAGCTTAAAGATGAGTCCTTTGTTTCCTTCTTTCCTGTAACTCGGCCATTTCATTTGCAAGTGAAACAGGATCATCCATTCATGTATTGTATTTTCGAACGGATGACTTACATCTTAAACCTTTTGACAGATGGTAAGAAAAGTAGGTTTTAGTCTTTAGTAAAACTTGTTAGCATTACATGGTGCTTCCTCTGAATCTTACGTTTGTCCCTGTGGTGAGAAGATGCACCAATCAAGTCTTTAAAACTAGAAATCGACATGTTTTTAGTATTCCACTGCTTGACCCCAGTGAGTTATGCTCATCACGGAGATGGGGGCAGGAAGTCTTTGTAGGGTTTTCGAATATTGTTTATATCTCTGTGTTTTTCTTCTAAATTTGTTTTTGTTTTCTGCCCATTGCTGTAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTGCAGACAGAATTGGCGTGAGGATTAAGTGCCCATGAACAAAAGTATACGTTTGTGAGATCACAAGTTTTTCATTACGGATTTTCTAACCAAATTAGAAGTAATTTCAATTAATAAAATATTATTTTCATGAACGGCCTTGTAGAATAGGATCTATTCTATAGGTTCTACCTTTATGTCCTTGAGTAAAGTTTTATTTTTTATTTTTTACTTTTTAATTTAAAGTTTGAAATGGCATGTAATAATAAAGTTTATTATTACTATTTTATTGATTTATTGCCCTTTTCAAACCTATTTTAATGTACTATATTTAAAGAATGATT

mRNA sequence

TTATTGATTGATAGAGGATCGGTTTGTGCTAGGACTTTGCGGATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGTACGTGTCTTACTTGGAGAATAGGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTGCAGACAGAATTGGCGTGAGGATTAAGTGCCCATGAACAAAAGTATACGTTTGTGAGATCACAAGTTTTTCATTACGGATTTTCTAACCAAATTAGAAGTAATTTCAATTAATAAAATATTATTTTCATGAACGGCCTTGTAGAATAGGATCTATTCTATAGGTTCTACCTTTATGTCCTTGAGTAAAGTTTTATTTTTTATTTTTTACTTTTTAATTTAAAGTTTGAAATGGCATGTAATAATAAAGTTTATTATTACTATTTTATTGATTTATTGCCCTTTTCAAACCTATTTTAATGTACTATATTTAAAGAATGATT

Coding sequence (CDS)

TTATTGATTGATAGAGGATCGGTTTGTGCTAGGACTTTGCGGATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGTACGTGTCTTACTTGGAGAATAGGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTGCAGACAGAATTGGCGTGAGGATTAA

Protein sequence

LLIDRGSVCARTLRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Homology
[Close]
BLAST of Cp4.1LG08g06750 vs. Swiss-Prot
Match: RPC10_HUMAN (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-16
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1 

Query: 17  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDM- 76
           FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVEEGQ--RCHRFSCNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 77  KNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           +N   T  +CP C   +A F+Q+Q RSADEP +TFYKC N  C   WR+
Sbjct: 64  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Cp4.1LG08g06750 vs. Swiss-Prot
Match: RPC10_MOUSE (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.7e-16
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1 

Query: 17  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDM- 76
           FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVEEGQ--RCHRFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 77  KNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           +N   T   CP C   +A F+Q+Q RSADEP +TFYKC N  C   WR+
Sbjct: 64  ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Cp4.1LG08g06750 vs. Swiss-Prot
Match: RPC10_SCHPO (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc11 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.7e-16
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           M+FCPTCGN L   +   G+++ F C TCPY  +      +  +    +KE++ ++  ++
Sbjct: 1   MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 60

Query: 75  -MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
             ++  QTE TC N  C   +A F Q+Q+RSADEP STFY+C    C+  WRE+
Sbjct: 61  AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTK--CKFQWREN 109

[Close]
BLAST of Cp4.1LG08g06750 vs. Swiss-Prot
Match: RPC10_YEAST (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++    
Sbjct: 2   LSFCPSCNNMLLITSGDSGVYT-LACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGGG- 61

Query: 75  MKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
             N  QT+  CPN   CG   A F Q+Q+RSADEP +TFYKC+N  C   W+E+
Sbjct: 62  WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVN--CGHRWKEN 110

[Close]
BLAST of Cp4.1LG08g06750 vs. Swiss-Prot
Match: RPC10_BOVIN (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-15
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 17  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMK 76
           FCP CGN L  E     +  RF C TCPYV  +  +V   RK   +K+  + +      +
Sbjct: 4   FCPGCGNGLIVEEGQ--RCHRFACNTCPYVHNVTRKVT-NRKYPKLKEVDDELGGAAAWE 63

Query: 77  NAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           N   T   CP C   +A F+Q+Q R ADEP +TFYKC N  C   WR+
Sbjct: 64  NVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Cp4.1LG08g06750 vs. TrEMBL
Match: A0A0A0LCM4_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-59
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. TrEMBL
Match: F6I6G3_VITVI (DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_15s0046g00090 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGN LQ+ELP+MG+ +RFFCPTCPYV ++E +VKIKRKQ LVKKE+EPI S DD
Sbjct: 1   MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           MKN   T+ATCP+C FGKA F Q+Q RSADEP STFY C+NE+C + WRED
Sbjct: 61  MKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. TrEMBL
Match: I1KJX9_SOYBN (DNA-directed RNA polymerase subunit OS=Glycine max GN=GLYMA_07G131200 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQ+ELP MG+ SRFFC  CPYV  +ENRV+IKRKQ LV KE+EPI S+DD
Sbjct: 1   MEFCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFSEDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           M NAA TEATCP CG GKAAF + Q RSADEPA+ FYKC+N +C++ WRE
Sbjct: 61  MTNAASTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNECKKQWRE 110

[Close]
BLAST of Cp4.1LG08g06750 vs. TrEMBL
Match: I1N2G1_SOYBN (DNA-directed RNA polymerase subunit OS=Glycine max GN=GLYMA_18G179600 PE=3 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCP+CGNMLQ+ELP MG+ SRFFC  CPYV ++ENRV+IKRKQ LV+KE+EPI S+DD
Sbjct: 1   MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           M NA  TEATCP CG GKAAF + Q RSADEPA+ FYKC+N DC++ WRE
Sbjct: 61  MTNAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 110

[Close]
BLAST of Cp4.1LG08g06750 vs. TrEMBL
Match: A0A0B2Q8J2_GLYSO (DNA-directed RNA polymerase subunit OS=Glycine soja GN=glysoja_032151 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCP+CGNMLQ+ELP MG+ SRFFC  CPYV ++ENRV+IKRKQ LV+KE+EPI S+DD
Sbjct: 1   MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           M NA  TEATCP CG GKAAF + Q RSADEPA+ FYKC+N DC++ WRE
Sbjct: 61  MTNAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 110

[Close]
BLAST of Cp4.1LG08g06750 vs. TAIR10
Match: AT4G07950.1 (AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-34
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           +  AA+TEA CP CG  KA F  +Q+RSADEP S FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLK--CEFTWREE 106

[Close]
BLAST of Cp4.1LG08g06750 vs. TAIR10
Match: AT1G01210.1 (AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 139.0 bits (349), Expect = 1.9e-33
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           +  AA+TEA CP CG  KA F  +Q+RSADEP S FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLK--CEFTWREE 106

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: gi|449446776|ref|XP_004141147.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-59
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: gi|297745506|emb|CBI40586.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 185.3 bits (469), Expect = 6.7e-44
Identity = 80/115 (69.57%), Postives = 95/115 (82.61%), Query Frame = 1 

Query: 11  RTLRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPII 70
           R  +MEFCPTCGN LQ+ELP+MG+ +RFFCPTCPYV ++E +VKIKRKQ LVKKE+EPI 
Sbjct: 61  RLQQMEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIF 120

Query: 71  SDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           S DDMKN   T+ATCP+C FGKA F Q+Q RSADEP STFY C+NE+C + WRED
Sbjct: 121 SKDDMKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRED 175

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: gi|225470966|ref|XP_002267122.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Vitis vinifera])

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGN LQ+ELP+MG+ +RFFCPTCPYV ++E +VKIKRKQ LVKKE+EPI S DD
Sbjct: 1   MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           MKN   T+ATCP+C FGKA F Q+Q RSADEP STFY C+NE+C + WRED
Sbjct: 61  MKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: gi|947100595|gb|KRH49087.1| (hypothetical protein GLYMA_07G131200 [Glycine max])

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-42
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQ+ELP MG+ SRFFC  CPYV  +ENRV+IKRKQ LV KE+EPI S+DD
Sbjct: 1   MEFCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFSEDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           M NAA TEATCP CG GKAAF + Q RSADEPA+ FYKC+N +C++ WRE
Sbjct: 61  MTNAASTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNECKKQWRE 110

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: gi|356567921|ref|XP_003552163.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Glycine max])

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-42
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 1 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCP+CGNMLQ+ELP MG+ SRFFC  CPYV ++ENRV+IKRKQ LV+KE+EPI S+DD
Sbjct: 1   MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           M NA  TEATCP CG GKAAF + Q RSADEPA+ FYKC+N DC++ WRE
Sbjct: 61  MTNAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 110

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPC10_HUMAN4.5e-1640.37DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=... [more]
RPC10_MOUSE7.7e-1640.37DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=... [more]
RPC10_SCHPO7.7e-1638.60DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (stra... [more]
RPC10_YEAST3.8e-1538.60DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strai... [more]
RPC10_BOVIN8.5e-1539.81DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1[more]
BLAST of Cp4.1LG08g06750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCM4_CUCSA1.8e-5997.30DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G844880 PE=3 SV=1[more]
F6I6G3_VITVI1.4e-4371.17DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_15s0046g00090 PE=3 ... [more]
I1KJX9_SOYBN1.1e-4271.82DNA-directed RNA polymerase subunit OS=Glycine max GN=GLYMA_07G131200 PE=3 SV=1[more]
I1N2G1_SOYBN1.1e-4270.91DNA-directed RNA polymerase subunit OS=Glycine max GN=GLYMA_18G179600 PE=3 SV=2[more]
A0A0B2Q8J2_GLYSO1.1e-4270.91DNA-directed RNA polymerase subunit OS=Glycine soja GN=glysoja_032151 PE=3 SV=1[more]
BLAST of Cp4.1LG08g06750 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G07950.11.7e-3458.56 DNA-directed RNA polymerase, subunit M, archaeal[more]
AT1G01210.11.9e-3355.86 DNA-directed RNA polymerase, subunit M, archaeal[more]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446776|ref|XP_004141147.1|2.5e-5997.30PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus][more]
gi|297745506|emb|CBI40586.3|6.7e-4469.57unnamed protein product [Vitis vinifera][more]
gi|225470966|ref|XP_002267122.1|1.9e-4371.17PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Vitis vinifera][more]
gi|947100595|gb|KRH49087.1|1.6e-4271.82hypothetical protein GLYMA_07G131200 [Glycine max][more]
gi|356567921|ref|XP_003552163.1|1.6e-4270.91PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR019761DNA-dir_RNA_pol-M_15_CS
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006386 termination of RNA polymerase III transcription
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0001056 RNA polymerase III activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06750.1Cp4.1LG08g06750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 83..123
score: 8.8
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 83..124
score: 3.4
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 85..122
scor
IPR001222Zinc finger, TFIIS-typePROFILEPS51133ZF_TFIIS_2coord: 81..123
score: 13
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 16..70
score: 7.
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRPIRSF005586RNApol_RpoMcoord: 15..125
score: 1.3
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 17..43
scor
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 56..124
score: 3.9
NoneNo IPR availableGENE3DG3DSA:2.20.70.10coord: 14..48
score: 3.
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 15..125
score: 9.8
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 15..125
score: 9.8
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 65..125
score: 1.08E-16coord: 14..53
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g06750Cucsa.340630Cucumber (Gy14) v1cgycpeB0902
Cp4.1LG08g06750CmaCh06G017400Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g06750CmoCh06G017280Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g06750Csa3G844880Cucumber (Chinese Long) v2cpecuB865
Cp4.1LG08g06750MELO3C026899Melon (DHL92) v3.5.1cpemeB798
Cp4.1LG08g06750ClCG10G013250Watermelon (Charleston Gray)cpewcgB769
Cp4.1LG08g06750CSPI03G40890Wild cucumber (PI 183967)cpecpiB867
Cp4.1LG08g06750Lsi03G012870Bottle gourd (USVL1VR-Ls)cpelsiB709
Cp4.1LG08g06750MELO3C026899.2Melon (DHL92) v3.6.1cpemedB939
Cp4.1LG08g06750CsaV3_3G043380Cucumber (Chinese Long) v3cpecucB1061
Cp4.1LG08g06750Bhi11G001283Wax gourdcpewgoB1077
Cp4.1LG08g06750CsGy3G038340Cucumber (Gy14) v2cgybcpeB458
Cp4.1LG08g06750Carg23333Silver-seed gourdcarcpeB0389
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g06750Cucurbita pepo (Zucchini)cpecpeB490
Cp4.1LG08g06750Cucurbita maxima (Rimu)cmacpeB293
Cp4.1LG08g06750Watermelon (97103) v1cpewmB831