Cp4.1LG08g06720 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMitochondrial transcription termination factor family protein
LocationCp4.1LG08 : 22863 .. 23348 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACAGATAGTCAGCCTTCACCAACACGTGATAATGAAACCGGTAGAGGTCCTTGTTGGACGTGGGAAACCCTCCTCCGATGTAGCTAGGATGGTTATGAAATGTCCCCAGGTGGTCACCTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTTTTCAAGTCTGAGATGTGTAGGCCAATCGAAGAGCTTGTCAACTTACCTGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTACCAGAGGGTGCAGAGAAAGGGAATCAGATGTTCATTAAATTGGTTTCTCAACTGCAGTGACCAAAGATTTGAGGAGAGATTGAGGGGAGATTACATTGAAACAGATAGTATGGGGCCATCGTTTTGTATGGGAGGGAAGTTAGAGCTATCAGGGAAGGGTATTATTGTGTCTGATGATGAAGAAGAAGATGAGAGTGATGAAGAACTTCTTCACCCACACATTGTTTCTCTTTAG

mRNA sequence

ATGCCACAGATAGTCAGCCTTCACCAACACGTGATAATGAAACCGGTAGAGGTCCTTGTTGGACGTGGGAAACCCTCCTCCGATGTAGCTAGGATGGTTATGAAATGTCCCCAGGTGGTCACCTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTTTTCAAGTCTGAGATGTGTAGGCCAATCGAAGAGCTTGTCAACTTACCTGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTACCAGAGGGTGCAGAGAAAGGGAATCAGATGTTCATTAAATTGGTTTCTCAACTGCAGTGACCAAAGATTTGAGGAGAGATTGAGGGGAGATTACATTGAAACAGATAGTATGGGGCCATCGTTTTGTATGGGAGGGAAGTTAGAGCTATCAGGGAAGGGTATTATTGTGTCTGATGATGAAGAAGAAGATGAGAGTGATGAAGAACTTCTTCACCCACACATTGTTTCTCTTTAG

Coding sequence (CDS)

ATGCCACAGATAGTCAGCCTTCACCAACACGTGATAATGAAACCGGTAGAGGTCCTTGTTGGACGTGGGAAACCCTCCTCCGATGTAGCTAGGATGGTTATGAAATGTCCCCAGGTGGTCACCTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTTTTCAAGTCTGAGATGTGTAGGCCAATCGAAGAGCTTGTCAACTTACCTGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTACCAGAGGGTGCAGAGAAAGGGAATCAGATGTTCATTAAATTGGTTTCTCAACTGCAGTGACCAAAGATTTGAGGAGAGATTGAGGGGAGATTACATTGAAACAGATAGTATGGGGCCATCGTTTTGTATGGGAGGGAAGTTAGAGCTATCAGGGAAGGGTATTATTGTGTCTGATGATGAAGAAGAAGATGAGAGTGATGAAGAACTTCTTCACCCACACATTGTTTCTCTTTAG

Protein sequence

MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCRPIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDSMGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL
Homology
[Close]
BLAST of Cp4.1LG08g06720 vs. Swiss-Prot
Match: MTEF4_ARATH (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 62/155 (40.00%), Postives = 99/155 (63.87%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ VSL +  ++K ++ L   G        MV+ CPQV+   + +MK S+ +F+ EM R
Sbjct: 384 MPQFVSLSESPMLKHIDFLTKCGFSIDQTREMVIGCPQVLALNLGIMKLSFEYFQKEMKR 443

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYI---E 120
           P+++LV+ P +FTY LES +KPR++++ +KGI+CSL W LNCSD++FE+R+  D I   E
Sbjct: 444 PLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRMSYDTIDIEE 503

Query: 121 TDSMGPSFCMGGKLELSGKGIIVSDDEEEDESDEE 153
            ++   SF M   ++   +    S+ EEE++ D+E
Sbjct: 504 VETDPSSFDMNTLMQPEREEESDSEYEEEEDDDDE 538

[Close]
BLAST of Cp4.1LG08g06720 vs. Swiss-Prot
Match: MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 35/129 (27.13%), Postives = 65/129 (50.39%), Query Frame = 1 

Query: 29  VARMVMKCPQVVTCRVELMKNSYYFFKSEMCRPIEELVNLPEYFTYSLESRIKPRYQRVQ 88
           +  M+   P ++   V+ ++  Y + +  M RP+++L+  P +F+YSLE RI PR+  + 
Sbjct: 514 LGEMIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMV 573

Query: 89  RKGIRCSLNWFLNCSDQRFEERLRGDY---------IETDSMGPSFCMGGKLELSGKGII 148
              +   L + L C+D+ FE R+R            ++++   PS        +S + I 
Sbjct: 574 ENRVNFKLRYMLACTDEEFERRVRDKVERRERFEAGLDSEDSQPS-----DENISDQEIA 633

[Close]
BLAST of Cp4.1LG08g06720 vs. Swiss-Prot
Match: MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana GN=MTERF5 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1 

Query: 2   PQIVSLHQHVIMKPV-EVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 61
           PQ   L     +KPV E  + +G    ++  M+ +   + T  ++      + +   M  
Sbjct: 361 PQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQTMDY 420

Query: 62  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEE 110
           P  ELV  P++F YSL+ RIKPRY+ VQR G+R  LN  L+ S   FE+
Sbjct: 421 PKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEK 469

[Close]
BLAST of Cp4.1LG08g06720 vs. Swiss-Prot
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 1 

Query: 4   IVSLHQHVIMKPVEVLV-GRGKPSSDVARMVMKCPQVVTCRVEL-MKNSYYFFKSEMCRP 63
           +VS  +  ++  +E L  G G    +VA+MV++ P ++T  V+  +     FF  EM   
Sbjct: 164 LVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGD 223

Query: 64  IEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERL 112
           ++EL   P+YF++SLE +IKPR++ ++  GI   L+  L  SD +F   L
Sbjct: 224 VKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWL 273

[Close]
BLAST of Cp4.1LG08g06720 vs. Swiss-Prot
Match: MTEF6_ARATH (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 34/114 (29.82%), Postives = 64/114 (56.14%), Query Frame = 1 

Query: 2   PQIVSLHQHVIMKP-VEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYY----FFKS 61
           PQ++    + I+KP  + L   G   S +A MV   PQ++   ++ +KNS      F   
Sbjct: 213 PQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQIL---IKSVKNSLQPRIRFLVQ 272

Query: 62  EMCRPIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEER 111
            M R ++E+ + PE+F + L+ +++ R++ V++  I CSL   L+C+ ++F E+
Sbjct: 273 VMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEK 323

[Close]
BLAST of Cp4.1LG08g06720 vs. TrEMBL
Match: I1KQC1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G046300 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.6e-63
Identity = 120/161 (74.53%), Postives = 138/161 (85.71%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ+VSLHQHVIMKPVE L+GR  P+ DVA MV+KCPQ+V  RVELMKNSYYFFKSEM R
Sbjct: 342 MPQVVSLHQHVIMKPVEFLLGRTIPAQDVASMVVKCPQLVALRVELMKNSYYFFKSEMGR 401

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRYQR++ KGIRCSLNW LNCSDQRFEERL+G YIET+S
Sbjct: 402 PLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETES 461

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           +GP FCMGGKLEL G G++    +EE+ESD+ELL+   VSL
Sbjct: 462 VGPRFCMGGKLELPGNGLV---SDEEEESDDELLYRRTVSL 499

[Close]
BLAST of Cp4.1LG08g06720 vs. TrEMBL
Match: A0A072VS35_MEDTR (Transcription termination factor family protein OS=Medicago truncatula GN=MTR_1g115415 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-62
Identity = 118/161 (73.29%), Postives = 139/161 (86.34%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ+VSLHQ+VIMKPVE L+GR  PS DVA MV+KCPQ+V  RVELMKNSYYFFKSEM R
Sbjct: 344 MPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVELMKNSYYFFKSEMGR 403

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRYQR++ KGI+CSLNW LNCSDQRFEERL+G+YIET+S
Sbjct: 404 PVKELVEFPEYFTYSLESRIKPRYQRLKTKGIKCSLNWMLNCSDQRFEERLQGNYIETES 463

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           +GPSFC+GGKLEL G  I+    +EE+ESD+E+L+   VSL
Sbjct: 464 IGPSFCIGGKLELPGNDIV---SDEEEESDDEMLYRRTVSL 501

[Close]
BLAST of Cp4.1LG08g06720 vs. TrEMBL
Match: A0A0B2Q5G6_GLYSO (mTERF domain-containing protein 1, mitochondrial OS=Glycine soja GN=glysoja_002627 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.7e-62
Identity = 119/161 (73.91%), Postives = 137/161 (85.09%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ+VSLHQHVIMKPVE L+GR   + DVA MV+KCPQ+V  RVELMKNSYYFFKSEM R
Sbjct: 342 MPQVVSLHQHVIMKPVEFLLGRTILAQDVASMVVKCPQLVALRVELMKNSYYFFKSEMGR 401

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRYQR++ KGIRCSLNW LNCSDQRFEERL+G YIET+S
Sbjct: 402 PLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETES 461

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           +GP FCMGGKLEL G G++    +EE+ESD+ELL+   VSL
Sbjct: 462 VGPRFCMGGKLELPGNGLV---SDEEEESDDELLYRRTVSL 499

[Close]
BLAST of Cp4.1LG08g06720 vs. TrEMBL
Match: A0A061DIS6_THECC (Mitochondrial transcription termination factor family protein OS=Theobroma cacao GN=TCM_001393 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.7e-62
Identity = 117/161 (72.67%), Postives = 136/161 (84.47%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQI SL+QHV+MKP+E L+GRG P  DVA+MVMKCPQ+V  RVE MK SYY+FKSEM R
Sbjct: 347 MPQIASLNQHVLMKPIEFLLGRGLPLEDVAKMVMKCPQLVALRVEHMKRSYYYFKSEMGR 406

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRY ++Q KGIRCSLNWFLNCSDQRFEERL GDYIE++S
Sbjct: 407 PVKELVEFPEYFTYSLESRIKPRYLKLQNKGIRCSLNWFLNCSDQRFEERLEGDYIESES 466

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           +GPSFCMGGKLEL G  I+    +EEDESD+E+L+   VSL
Sbjct: 467 LGPSFCMGGKLELPGNDIV---SDEEDESDDEILYRRTVSL 504

[Close]
BLAST of Cp4.1LG08g06720 vs. TrEMBL
Match: A0A0D2QQK4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G090600 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.4e-62
Identity = 117/161 (72.67%), Postives = 136/161 (84.47%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQI SL+QHVIMKP+E L+GRG P  DVA MVMKCPQ+V  RVELMK SYY+FKSEM R
Sbjct: 206 MPQIASLNQHVIMKPIEFLLGRGLPLEDVAIMVMKCPQLVALRVELMKKSYYYFKSEMGR 265

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLE RIKPRY ++Q KGIRCSLNWFLNCSDQRFEERL+GDYIE++S
Sbjct: 266 PVKELVEFPEYFTYSLECRIKPRYTKLQSKGIRCSLNWFLNCSDQRFEERLQGDYIESES 325

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           +GPSFCMGGKLEL G  ++    +EEDESD+E+L+   VSL
Sbjct: 326 LGPSFCMGGKLELPGSDVV---SDEEDESDDEVLYRRTVSL 363

[Close]
BLAST of Cp4.1LG08g06720 vs. TAIR10
Match: AT2G44020.1 (AT2G44020.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-58
Identity = 107/161 (66.46%), Postives = 135/161 (83.85%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQIVSL Q+VIMKP+E L+GR     D+A+MV++CPQ++  RVELMKNSYYF+K+EM R
Sbjct: 349 MPQIVSLKQNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVELMKNSYYFYKTEMGR 408

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRYQ++Q KGIR SLNWFLNCSDQRFEERL+G++I+ D+
Sbjct: 409 PMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERLQGNFIDPDT 468

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
            GP+F MGGKLE+ G  I+   DEEEDESD+E+L+   ++L
Sbjct: 469 EGPTFDMGGKLEMPGGEIVT--DEEEDESDDEVLYRRTLTL 507

[Close]
BLAST of Cp4.1LG08g06720 vs. TAIR10
Match: AT4G02990.1 (AT4G02990.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29
Identity = 62/155 (40.00%), Postives = 99/155 (63.87%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ VSL +  ++K ++ L   G        MV+ CPQV+   + +MK S+ +F+ EM R
Sbjct: 384 MPQFVSLSESPMLKHIDFLTKCGFSIDQTREMVIGCPQVLALNLGIMKLSFEYFQKEMKR 443

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYI---E 120
           P+++LV+ P +FTY LES +KPR++++ +KGI+CSL W LNCSD++FE+R+  D I   E
Sbjct: 444 PLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRMSYDTIDIEE 503

Query: 121 TDSMGPSFCMGGKLELSGKGIIVSDDEEEDESDEE 153
            ++   SF M   ++   +    S+ EEE++ D+E
Sbjct: 504 VETDPSSFDMNTLMQPEREEESDSEYEEEEDDDDE 538

[Close]
BLAST of Cp4.1LG08g06720 vs. TAIR10
Match: AT2G21710.1 (AT2G21710.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-11
Identity = 35/129 (27.13%), Postives = 65/129 (50.39%), Query Frame = 1 

Query: 29  VARMVMKCPQVVTCRVELMKNSYYFFKSEMCRPIEELVNLPEYFTYSLESRIKPRYQRVQ 88
           +  M+   P ++   V+ ++  Y + +  M RP+++L+  P +F+YSLE RI PR+  + 
Sbjct: 514 LGEMIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMV 573

Query: 89  RKGIRCSLNWFLNCSDQRFEERLRGDY---------IETDSMGPSFCMGGKLELSGKGII 148
              +   L + L C+D+ FE R+R            ++++   PS        +S + I 
Sbjct: 574 ENRVNFKLRYMLACTDEEFERRVRDKVERRERFEAGLDSEDSQPS-----DENISDQEIA 633

[Close]
BLAST of Cp4.1LG08g06720 vs. TAIR10
Match: AT2G34620.1 (AT2G34620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-11
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 4   IVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVEL-MKNSYYFFKSEMCRPI 63
           +VS  +H ++  +  L   G    +   M+++CP + T  +E   K    +F SE+   +
Sbjct: 186 LVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKL 245

Query: 64  EELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERL 112
           E L   P+YF +SLE RIKPR+     +G+   L+  L  +D+ FE+ L
Sbjct: 246 ENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294

[Close]
BLAST of Cp4.1LG08g06720 vs. TAIR10
Match: AT4G14605.1 (AT4G14605.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-09
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1 

Query: 2   PQIVSLHQHVIMKPV-EVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 61
           PQ   L     +KPV E  + +G    ++  M+ +   + T  ++      + +   M  
Sbjct: 361 PQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQTMDY 420

Query: 62  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEE 110
           P  ELV  P++F YSL+ RIKPRY+ VQR G+R  LN  L+ S   FE+
Sbjct: 421 PKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEK 469

[Close]
BLAST of Cp4.1LG08g06720 vs. NCBI nr
Match: gi|659130050|ref|XP_008464974.1| (PREDICTED: uncharacterized protein LOC103502714 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 2.2e-63
Identity = 119/161 (73.91%), Postives = 138/161 (85.71%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQIVSLHQHVI KP E L+ RG PSSDVA+M++KCPQ++ CRV LMKNSYYFFKS+M R
Sbjct: 359 MPQIVSLHQHVITKPAEFLLERGIPSSDVAKMIVKCPQLLACRVPLMKNSYYFFKSDMGR 418

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           PI+ELV+ PEYFTYSLESRIKPRYQR+Q KGI CSLNWFLNCSDQRFEERL+G++IET+S
Sbjct: 419 PIKELVDFPEYFTYSLESRIKPRYQRLQSKGISCSLNWFLNCSDQRFEERLKGEFIETES 478

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           + PSFCMGG+LEL     IVSDDE E++  +E LH  IVSL
Sbjct: 479 LRPSFCMGGRLELPSNETIVSDDEVEEDECDEQLHRRIVSL 519

[Close]
BLAST of Cp4.1LG08g06720 vs. NCBI nr
Match: gi|356524605|ref|XP_003530919.1| (PREDICTED: uncharacterized protein LOC100809590 [Glycine max])

HSP 1 Score: 249.6 bits (636), Expect = 3.7e-63
Identity = 120/161 (74.53%), Postives = 138/161 (85.71%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ+VSLHQHVIMKPVE L+GR  P+ DVA MV+KCPQ+V  RVELMKNSYYFFKSEM R
Sbjct: 342 MPQVVSLHQHVIMKPVEFLLGRTIPAQDVASMVVKCPQLVALRVELMKNSYYFFKSEMGR 401

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRYQR++ KGIRCSLNW LNCSDQRFEERL+G YIET+S
Sbjct: 402 PLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETES 461

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           +GP FCMGGKLEL G G++    +EE+ESD+ELL+   VSL
Sbjct: 462 VGPRFCMGGKLELPGNGLV---SDEEEESDDELLYRRTVSL 499

[Close]
BLAST of Cp4.1LG08g06720 vs. NCBI nr
Match: gi|645263689|ref|XP_008237350.1| (PREDICTED: uncharacterized protein LOC103336094 [Prunus mume])

HSP 1 Score: 246.5 bits (628), Expect = 3.1e-62
Identity = 118/161 (73.29%), Postives = 138/161 (85.71%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQIVSLHQHVIMKPVE L+GRG PS DVA+M++KCPQ++  RVELMKNS+YFFKSEM R
Sbjct: 357 MPQIVSLHQHVIMKPVEFLLGRGIPSEDVAKMIVKCPQLIALRVELMKNSFYFFKSEMGR 416

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRYQR+Q K IRCSL WFLNCSDQRFEERL+G+YIET++
Sbjct: 417 PLKELVEFPEYFTYSLESRIKPRYQRLQSKEIRCSLKWFLNCSDQRFEERLQGEYIETET 476

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
            GP FCMGGKLEL G  ++    +EEDESD+E+L+   VSL
Sbjct: 477 PGPLFCMGGKLELPGNEMV---SDEEDESDDEVLYRRTVSL 514

[Close]
BLAST of Cp4.1LG08g06720 vs. NCBI nr
Match: gi|922409183|ref|XP_013470448.1| (transcription termination factor family protein [Medicago truncatula])

HSP 1 Score: 246.1 bits (627), Expect = 4.1e-62
Identity = 118/161 (73.29%), Postives = 139/161 (86.34%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ+VSLHQ+VIMKPVE L+GR  PS DVA MV+KCPQ+V  RVELMKNSYYFFKSEM R
Sbjct: 344 MPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVELMKNSYYFFKSEMGR 403

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           P++ELV  PEYFTYSLESRIKPRYQR++ KGI+CSLNW LNCSDQRFEERL+G+YIET+S
Sbjct: 404 PVKELVEFPEYFTYSLESRIKPRYQRLKTKGIKCSLNWMLNCSDQRFEERLQGNYIETES 463

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
           +GPSFC+GGKLEL G  I+    +EE+ESD+E+L+   VSL
Sbjct: 464 IGPSFCIGGKLELPGNDIV---SDEEEESDDEMLYRRTVSL 501

[Close]
BLAST of Cp4.1LG08g06720 vs. NCBI nr
Match: gi|568838463|ref|XP_006473232.1| (PREDICTED: uncharacterized protein LOC102610055 [Citrus sinensis])

HSP 1 Score: 245.7 bits (626), Expect = 5.4e-62
Identity = 116/161 (72.05%), Postives = 139/161 (86.34%), Query Frame = 1 

Query: 1   MPQIVSLHQHVIMKPVEVLVGRGKPSSDVARMVMKCPQVVTCRVELMKNSYYFFKSEMCR 60
           MPQ+VSL+QHVIMK VE L+GRG PS DVA+MV++CPQ++ CRVELMKNS+YFFKSEM R
Sbjct: 343 MPQVVSLNQHVIMKSVEFLLGRGIPSGDVAKMVVQCPQLIACRVELMKNSFYFFKSEMGR 402

Query: 61  PIEELVNLPEYFTYSLESRIKPRYQRVQRKGIRCSLNWFLNCSDQRFEERLRGDYIETDS 120
           PI+EL+  PEYFTYSLESRIKPRYQR+Q KGIRCS+NWFLNCSDQRFEERL G+YIE++S
Sbjct: 403 PIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESES 462

Query: 121 MGPSFCMGGKLELSGKGIIVSDDEEEDESDEELLHPHIVSL 162
            GPSFC+GGKL L G  ++    +EEDESD+E+L+   VSL
Sbjct: 463 SGPSFCIGGKLVLPGSEVV---SDEEDESDDEVLYKRTVSL 500

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MTEF4_ARATH1.1e-2740.00Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana G... [more]
MTEF2_ARATH8.1e-1027.13Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana G... [more]
MTEF5_ARATH4.5e-0833.94Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana G... [more]
MTEF1_ARATH4.5e-0833.64Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN... [more]
MTEF6_ARATH2.2e-0729.82Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG08g06720 vs. TrEMBL
Match NameE-valueIdentityDescription
I1KQC1_SOYBN2.6e-6374.53Uncharacterized protein OS=Glycine max GN=GLYMA_08G046300 PE=4 SV=1[more]
A0A072VS35_MEDTR2.9e-6273.29Transcription termination factor family protein OS=Medicago truncatula GN=MTR_1g... [more]
A0A0B2Q5G6_GLYSO3.7e-6273.91mTERF domain-containing protein 1, mitochondrial OS=Glycine soja GN=glysoja_0026... [more]
A0A061DIS6_THECC3.7e-6272.67Mitochondrial transcription termination factor family protein OS=Theobroma cacao... [more]
A0A0D2QQK4_GOSRA6.4e-6272.67Uncharacterized protein OS=Gossypium raimondii GN=B456_003G090600 PE=4 SV=1[more]
BLAST of Cp4.1LG08g06720 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44020.11.0e-5866.46 Mitochondrial transcription termination factor family protein[more]
AT4G02990.16.3e-2940.00 Mitochondrial transcription termination factor family protein[more]
AT2G21710.14.6e-1127.13 Mitochondrial transcription termination factor family protein[more]
AT2G34620.16.0e-1131.19 Mitochondrial transcription termination factor family protein[more]
AT4G14605.12.5e-0933.94 Mitochondrial transcription termination factor family protein[more]
BLAST of Cp4.1LG08g06720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130050|ref|XP_008464974.1|2.2e-6373.91PREDICTED: uncharacterized protein LOC103502714 [Cucumis melo][more]
gi|356524605|ref|XP_003530919.1|3.7e-6374.53PREDICTED: uncharacterized protein LOC100809590 [Glycine max][more]
gi|645263689|ref|XP_008237350.1|3.1e-6273.29PREDICTED: uncharacterized protein LOC103336094 [Prunus mume][more]
gi|922409183|ref|XP_013470448.1|4.1e-6273.29transcription termination factor family protein [Medicago truncatula][more]
gi|568838463|ref|XP_006473232.1|5.4e-6272.05PREDICTED: uncharacterized protein LOC102610055 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06720.1Cp4.1LG08g06720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 1..108
score: 1.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 62..93
score: 0.0075coord: 30..61
score:
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 2..145
score: 3.7
NoneNo IPR availablePANTHERPTHR13068:SF8EXPRESSED PROTEINcoord: 2..145
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g06720Cucurbita pepo (Zucchini)cpecpeB490
Cp4.1LG08g06720Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g06720Cucurbita moschata (Rifu)cmocpeB796