Cp4.1LG08g06680 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb family transcription factor APL
LocationCp4.1LG08 : 143862 .. 145647 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACCCATTTGTTTCTTCAACCTGGGAATGCTGCTGCTGGAGCTGGAGATTCATCAGGCCTTGTTCTTTCCACCGATGCCAAGCCCAGGCTTAAATGGACTCCTGACCTGCACGATCGCTTTGTTGAAGCTGTCAACCAGCTTGGAGGGGCTGACAGTGAGCACGCCCACTTCATTTCATTTCATTCTTAATTACTCTTCTCCTTTTCCACTCATTTCATTGCATCCTCTCTCTCTCTCTCTCTCTCTCTGCAGAGGCCACTCCTAAAACTGTCATGAAAATCATGGGCATTCCTGGCCTTACCTTGTACCACTTGAAAAGCCATCTCCAGGTACAATATATTATACTACTTTTTAATTATTTACTCGACCCACTTATTCGCTCAATCCAACTATAAAATTTTTTGGGTTTGATTCGTTCCACTCACTTTTATTTTAACCCAACTCAACCCAGATAGTAGTGAATTAGTTTGTTCAAATAATCACATTTGATTAACCCAACTCAAATGGTGAATTAGGTTGGGTTAATCGGGTTTTTCATGTCATCGTGGTATAATATTTGTAGTAATTTGTGGTTGAAAAGTGGTTATTTGAATTGAATGGGGATTTAAGATTGATGGGGGGTTTTTGGGATGCAGAAATACAGGCTGAGTAAGAATGTACATGGACAAGCAAATGGTGGAGGAAATGGAAGCAACAAAACTGGTAAGGAACAGAATGATTATATTATATTATTTGTGGTTTTAATTTATGAACTGAGTTGAAGTAGATATGGGTTGGCGTGTAGGGACAGTGGCGGCTGTTTACGGCGATCAAAGACTGGCGGCGGAGGCAAATGGAACACCCCGCACCAACAACATAGTGGTCGCCCCACAGCCCTCCTCCCACCCCAACAAGTACGCGCCCACTTTCGGAATACCCTTATTTTAACGTACACAAATGCATGCAGCTTAGTTCTTGTTATAATTATTTACTCCCTTCTCCAGAAGCCTTCAGATCAGTGAAACAATACAGATGCAGATTGAAGTCCAGAAAAGGCTGCACGAGCAGCTCGAGGTACTTAAATCAACCTTCATTGTATTGTATTGTATTAAAGAATGGTATCATATTGTCCACTTTGAGTATAAGTTCTAGTGGTTTTGCTTTGAGTTTTCCTTAAAAGGCTTCGTGCCAATTGAGATGTATTCCTTACTTAAACATAGGTACAACGGCACTTGCAGCTGCGAATAGAAGCACAAGGGAAGTATCTTCAAACAGTGCTAGAGAAAGCACAAGAGACACTAGGAAGGCAGGACTTGGGGTCAGTGGGTCTTGAAGCTGCAAAAGTGCAGCTCTCGGAGTTGGTCTCCAAGGTCTCCACTCAATGCCTAACCGCAGCGTTTCCAGAGCTCCAACAAACTCAGAGGCTATGTCCTCAACAAACGCAGCCCCCTGACTGCTCCATGGACAGTTGCCTGACCTCCTGCGAGGCCTCCAAGGACCAACAACAACAACAACAACTCCTTCTCCATAACTCCCAACACGCCCTCCGACCGAAAGCCATCGTCACCGACCATCATGGGCTGTCCATGAGCATTGGGCTGCTGCAGGGGGACAAGGGCGGGGAAGGGGATAATGGGTATTCGCCCTCGTTTGGGAGTAAGAAAAAGGAGGGTGAGACGGCGTTTAGATATAGAATGGCAGCTTCGTTTTTGGACTTGAATGCTGGTGAGGATCAACAACTTAGTAATAATGATCATGCGGCTTCTGCTACTTGCAAGATGTTTGACCTCAATGGCTTTAGTTGA

mRNA sequence

ACACCCATTTGTTTCTTCAACCTGGGAATGCTGCTGCTGGAGCTGGAGATTCATCAGGCCTTGTTCTTTCCACCGATGCCAAGCCCAGGCTTAAATGGACTCCTGACCTGCACGATCGCTTTGTTGAAGCTGTCAACCAGCTTGGAGGGGCTGACAAAATACAGGCTGAGTAAGAATGTACATGGACAAGCAAATGGTGGAGGAAATGGAAGCAACAAAACTGATATGGGTTGGCGTGTAGGGACAGTGGCGGCTGTTTACGGCGATCAAAGACTGGCGGCGGAGGCAAATGGAACACCCCGCACCAACAACATAGTGGTCGCCCCACAGCCCTCCTCCCACCCCAACAAAAGCCTTCAGATCAGTGAAACAATACAGATGCAGATTGAAAAAGCACAAGAGACACTAGGAAGGCAGGACTTGGGGTCAGTGGGTCTTGAAGCTGCAAAAGTGCAGCTCTCGGAGTTGGTCTCCAAGGTCTCCACTCAATGCCTAACCGCAGCGTTTCCAGAGCTCCAACAAACTCAGAGGCTATGTCCTCAACAAACGCAGCCCCCTGACTGCTCCATGGACAGTTGCCTGACCTCCTGCGAGGCCTCCAAGGACCAACAACAACAACAACAACTCCTTCTCCATAACTCCCAACACGCCCTCCGACCGAAAGCCATCGTCACCGACCATCATGGGCTGTCCATGAGCATTGGGCTGCTGCAGGGGGACAAGGGCGGGGAAGGGGATAATGGGTATTCGCCCTCGTTTGGGAGTAAGAAAAAGGAGGGTGAGACGGCGTTTAGATATAGAATGGCAGCTTCGTTTTTGGACTTGAATGCTGGTGAGGATCAACAACTTAGTAATAATGATCATGCGGCTTCTGCTACTTGCAAGATGTTTGACCTCAATGGCTTTAGTTGA

Coding sequence (CDS)

ATGCTGCTGCTGGAGCTGGAGATTCATCAGGCCTTGTTCTTTCCACCGATGCCAAGCCCAGGCTTAAATGGACTCCTGACCTGCACGATCGCTTTGTTGAAGCTGTCAACCAGCTTGGAGGGGCTGACAAAATACAGGCTGAGTAAGAATGTACATGGACAAGCAAATGGTGGAGGAAATGGAAGCAACAAAACTGATATGGGTTGGCGTGTAGGGACAGTGGCGGCTGTTTACGGCGATCAAAGACTGGCGGCGGAGGCAAATGGAACACCCCGCACCAACAACATAGTGGTCGCCCCACAGCCCTCCTCCCACCCCAACAAAAGCCTTCAGATCAGTGAAACAATACAGATGCAGATTGAAAAAGCACAAGAGACACTAGGAAGGCAGGACTTGGGGTCAGTGGGTCTTGAAGCTGCAAAAGTGCAGCTCTCGGAGTTGGTCTCCAAGGTCTCCACTCAATGCCTAACCGCAGCGTTTCCAGAGCTCCAACAAACTCAGAGGCTATGTCCTCAACAAACGCAGCCCCCTGACTGCTCCATGGACAGTTGCCTGACCTCCTGCGAGGCCTCCAAGGACCAACAACAACAACAACAACTCCTTCTCCATAACTCCCAACACGCCCTCCGACCGAAAGCCATCGTCACCGACCATCATGGGCTGTCCATGAGCATTGGGCTGCTGCAGGGGGACAAGGGCGGGGAAGGGGATAATGGGTATTCGCCCTCGTTTGGGAGTAAGAAAAAGGAGGGTGAGACGGCGTTTAGATATAGAATGGCAGCTTCGTTTTTGGACTTGAATGCTGGTGAGGATCAACAACTTAGTAATAATGATCATGCGGCTTCTGCTACTTGCAAGATGTTTGACCTCAATGGCTTTAGTTGA

Protein sequence

MLLLELEIHQALFFPPMPSPGLNGLLTCTIALLKLSTSLEGLTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQPSSHPNKSLQISETIQMQIEKAQETLGRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQTQPPDCSMDSCLTSCEASKDQQQQQQLLLHNSQHALRPKAIVTDHHGLSMSIGLLQGDKGGEGDNGYSPSFGSKKKEGETAFRYRMAASFLDLNAGEDQQLSNNDHAASATCKMFDLNGFS
Homology
[Close]
BLAST of Cp4.1LG08g06680 vs. Swiss-Prot
Match: PHL9_ARATH (Myb-related protein 2 OS=Arabidopsis thaliana GN=MYR2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-21
Identity = 104/327 (31.80%), Postives = 143/327 (43.73%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN++GQAN   N         ++G +  +      A E     ++ N+ + PQ
Sbjct: 94  LQKYRLSKNLNGQANNSFN---------KIGIMTMMEEKTPDADEI----QSENLSIGPQ 153

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
           P    NK+  I E +QMQIE                               KAQETLGRQ
Sbjct: 154 P----NKNSPIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQ 213

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQTQ---PPDCSMDSCLTS 221
           +LG+ G+EAAKVQLSELVSKVS +   ++F E ++ Q LC QQ Q   PPDCS++SCLTS
Sbjct: 214 NLGAAGIEAAKVQLSELVSKVSAEYPNSSFLEPKELQNLCSQQMQTNYPPDCSLESCLTS 273

Query: 222 CEASKDQQQQQQLLLHNSQHALR---------PKAIVTDHHGLSMSIGLLQGDKGGEGDN 281
            E +    Q+   +L N++  LR          K I+ +     M +   +G +G     
Sbjct: 274 SEGT----QKNSKMLENNRLGLRTYIGDSTSEQKEIMEEPLFQRMELTWTEGLRG----- 333

Query: 282 GYSPSFGSKKKEGETAFRY-RMAASFLDLNAG------EDQQLSNNDHA----------- 295
             +P   +   E E    Y   +   L +  G      + QQ +N DH            
Sbjct: 334 --NPYLSTMVSEAEQRISYSERSPGRLSIGVGLHGHKSQHQQGNNEDHKLETRNRKGMDS 392

[Close]
BLAST of Cp4.1LG08g06680 vs. Swiss-Prot
Match: PHLA_ARATH (Myb-related protein 1 OS=Arabidopsis thaliana GN=MYR1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-15
Identity = 71/185 (38.38%), Postives = 96/185 (51.89%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN++GQAN   +  NKT +   V         +    E + +  + ++ + PQ
Sbjct: 94  LQKYRLSKNLNGQAN---SSLNKTSVMTMV---------EENPPEVDES-HSESLSIGPQ 153

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
           PS +    L IS+ +QMQIE                               KAQETLGRQ
Sbjct: 154 PSMN----LPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQ 213

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQ---TQPPDCSMDSCLTS 193
           +LG+ G+EA K QLSELVSKVS     ++F E ++ Q L  QQ   T PP+ S+DSCLTS
Sbjct: 214 NLGAAGIEATKAQLSELVSKVSADYPDSSFLEPKELQNLHHQQMQKTYPPNSSLDSCLTS 261

[Close]
BLAST of Cp4.1LG08g06680 vs. TrEMBL
Match: A0A0A0LG98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G844850 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 6.6e-73
Identity = 196/315 (62.22%), Postives = 213/315 (67.62%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTP---RTNNIVV 101
           L KYRLSKN+HGQANGG +G+NKT  GWRVGTVA V  DQRL  EANG     RT+NIVV
Sbjct: 89  LQKYRLSKNLHGQANGG-SGTNKTGTGWRVGTVA-VSVDQRLG-EANGAAAAARTSNIVV 148

Query: 102 APQPSSHPNKSLQISETIQMQIE-------------------------------KAQETL 161
            PQP+S  NKSLQISETIQMQIE                               KAQETL
Sbjct: 149 GPQPTSQSNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETL 208

Query: 162 GRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPEL---QQTQRLC-PQQTQPPDCSMDS 221
           GRQ+LG+VGLEAAKVQLSELVSKVSTQCLTAAFPEL    Q+QR+C  QQ+QPPDCSMDS
Sbjct: 209 GRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSMDS 268

Query: 222 CLTSCE-ASKDQ--QQQQQLLLHNSQHALRPKAI-----VTDH--HGLSMSIGLLQGDKG 281
           CLTS E  SKDQ  QQQQ +LLHNS  ALRP A        DH  HGLSMSIGL+QG+K 
Sbjct: 269 CLTSSEGGSKDQQAQQQQHVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGLVQGEKA 328

Query: 282 G-EGDNGYSPS-----FGSKK-----KEGETAFRYRMAASFLDLNAGEDQQLS---NNDH 295
           G EG NGYS S     FGSK+      E ET FRYRM  +    NAGEDQ +S   NNDH
Sbjct: 329 GPEGYNGYSTSEGQRLFGSKRTKDAVMEKETGFRYRMDLN----NAGEDQLISSNNNNDH 388

[Close]
BLAST of Cp4.1LG08g06680 vs. TrEMBL
Match: F6HLA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07580 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.3e-35
Identity = 125/293 (42.66%), Postives = 161/293 (54.95%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN+HGQAN   + ++KT +G R+              EANG      ++ +P 
Sbjct: 95  LQKYRLSKNLHGQAN---SATSKTVVGERM-------------PEANGA-----LMSSPN 154

Query: 102 PSSHPNKSLQISETIQM------------------------------QIEKAQETLGRQD 161
             +  NKSL +SET+QM                               +EKAQETLGRQ+
Sbjct: 155 IGNQTNKSLHLSETLQMIEAQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQN 214

Query: 162 LGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQ--QTQPPDCSMDSCLTSCE 221
           LG+VGLEAAKVQLSELVSKVSTQCL +AF EL++ Q LCPQ  QTQP DCSMDSCLTSCE
Sbjct: 215 LGAVGLEAAKVQLSELVSKVSTQCLHSAFSELKELQSLCPQQTQTQPTDCSMDSCLTSCE 274

Query: 222 ASKDQQQQQQLLLHNSQHALRPKAIVTDHHGL-SMSIGLLQG----DKGGEGDNGYSPSF 281
            S+ +Q+     +HN    LRP    T+ +G  S S G  +G    D   +  N  + S 
Sbjct: 275 GSQREQE-----IHNCGMGLRP---YTNGNGSNSYSEGRFKGRAEADNFVDRTNHGADSG 334

Query: 282 GSKKKEGET---AFRYRMAASFLDLNAGEDQQLSNNDHAASATCKMFDLNGFS 295
            S K+E E     +R     + LDLNA       ++++  + +CK FDLNGFS
Sbjct: 335 NSVKQENEKMSHGYRLPCFGAKLDLNA-------HDENDVTLSCKQFDLNGFS 351

[Close]
BLAST of Cp4.1LG08g06680 vs. TrEMBL
Match: A0A061F2V1_THECC (Homeodomain-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_026448 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-33
Identity = 106/204 (51.96%), Postives = 122/204 (59.80%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN+HGQAN   NGSNK      +G VA   GD+   +EANGT   NN+ + PQ
Sbjct: 160 LQKYRLSKNLHGQAN---NGSNK------IGAVAMA-GDRM--SEANGT-HVNNLSIGPQ 219

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
                N  LQI E +QMQIE                               KAQETLGRQ
Sbjct: 220 A----NNGLQIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQ 279

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQTQ---PPDCSMDSCLTS 212
           +LGSVGLEAAKVQLSELVSKVS QCL +AF +L+  Q LCPQQTQ   P DCSMDSCLTS
Sbjct: 280 NLGSVGLEAAKVQLSELVSKVSNQCLNSAFSDLKDLQGLCPQQTQATPPTDCSMDSCLTS 339

[Close]
BLAST of Cp4.1LG08g06680 vs. TrEMBL
Match: A0A061F9P8_THECC (Homeodomain-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_026448 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-33
Identity = 106/204 (51.96%), Postives = 122/204 (59.80%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN+HGQAN   NGSNK      +G VA   GD+   +EANGT   NN+ + PQ
Sbjct: 96  LQKYRLSKNLHGQAN---NGSNK------IGAVAMA-GDRM--SEANGT-HVNNLSIGPQ 155

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
                N  LQI E +QMQIE                               KAQETLGRQ
Sbjct: 156 A----NNGLQIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQ 215

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQTQ---PPDCSMDSCLTS 212
           +LGSVGLEAAKVQLSELVSKVS QCL +AF +L+  Q LCPQQTQ   P DCSMDSCLTS
Sbjct: 216 NLGSVGLEAAKVQLSELVSKVSNQCLNSAFSDLKDLQGLCPQQTQATPPTDCSMDSCLTS 275

[Close]
BLAST of Cp4.1LG08g06680 vs. TrEMBL
Match: A0A0D2TNC1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G287500 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 133/327 (40.67%), Postives = 166/327 (50.76%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN+HGQAN   NGSNK      +G VA   GD+   +EA GT   NN+ + PQ
Sbjct: 84  LQKYRLSKNLHGQAN---NGSNK------IGAVAMT-GDRM--SEATGT-HMNNLSIGPQ 143

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
                NK LQI E +QMQIE                               KAQETLGRQ
Sbjct: 144 T----NKGLQIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQ 203

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQ-----TQPPDCSMDSCL 221
           +LG++GLEAAKVQLSELVSKVS QCL +AF +L+  Q LCPQQ     T P DCSMDSCL
Sbjct: 204 NLGNMGLEAAKVQLSELVSKVSNQCLNSAFSDLKDLQGLCPQQGQTQATPPTDCSMDSCL 263

Query: 222 TSCEASKDQQQQQQ----LLLHNS-----------------QHALRP------------K 281
           TSC+ S+ +Q+       L  +NS                 Q  L+P            +
Sbjct: 264 TSCDGSQKEQEIHNNGIFLRTYNSTSFMEQRDHVPEDRLVPQTELKPFTDMKLGNDAERR 323

Query: 282 AIVTDH--HGLSMSIGLLQGDKGGEGDNGYSPSFGSKKKEG---ETAFRYRMAASFLDLN 295
               D     LSMS+G LQG+KG    +    +  ++ +EG   +T  R    A+ LDLN
Sbjct: 324 MFFADRSTSDLSMSVG-LQGEKGHGSFSEGKFNGRNEDQEGFKLQTVNRLPYFATKLDLN 383

[Close]
BLAST of Cp4.1LG08g06680 vs. TAIR10
Match: AT3G04030.3 (AT3G04030.3 Homeodomain-like superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 3.6e-22
Identity = 104/327 (31.80%), Postives = 143/327 (43.73%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN++GQAN   N         ++G +  +      A E     ++ N+ + PQ
Sbjct: 94  LQKYRLSKNLNGQANNSFN---------KIGIMTMMEEKTPDADEI----QSENLSIGPQ 153

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
           P    NK+  I E +QMQIE                               KAQETLGRQ
Sbjct: 154 P----NKNSPIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQ 213

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQTQ---PPDCSMDSCLTS 221
           +LG+ G+EAAKVQLSELVSKVS +   ++F E ++ Q LC QQ Q   PPDCS++SCLTS
Sbjct: 214 NLGAAGIEAAKVQLSELVSKVSAEYPNSSFLEPKELQNLCSQQMQTNYPPDCSLESCLTS 273

Query: 222 CEASKDQQQQQQLLLHNSQHALR---------PKAIVTDHHGLSMSIGLLQGDKGGEGDN 281
            E +    Q+   +L N++  LR          K I+ +     M +   +G +G     
Sbjct: 274 SEGT----QKNSKMLENNRLGLRTYIGDSTSEQKEIMEEPLFQRMELTWTEGLRG----- 333

Query: 282 GYSPSFGSKKKEGETAFRY-RMAASFLDLNAG------EDQQLSNNDHA----------- 295
             +P   +   E E    Y   +   L +  G      + QQ +N DH            
Sbjct: 334 --NPYLSTMVSEAEQRISYSERSPGRLSIGVGLHGHKSQHQQGNNEDHKLETRNRKGMDS 392

[Close]
BLAST of Cp4.1LG08g06680 vs. TAIR10
Match: AT5G18240.1 (AT5G18240.1 myb-related protein 1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 71/185 (38.38%), Postives = 96/185 (51.89%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN++GQAN   +  NKT +   V         +    E + +  + ++ + PQ
Sbjct: 94  LQKYRLSKNLNGQAN---SSLNKTSVMTMV---------EENPPEVDES-HSESLSIGPQ 153

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
           PS +    L IS+ +QMQIE                               KAQETLGRQ
Sbjct: 154 PSMN----LPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQ 213

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQ---TQPPDCSMDSCLTS 193
           +LG+ G+EA K QLSELVSKVS     ++F E ++ Q L  QQ   T PP+ S+DSCLTS
Sbjct: 214 NLGAAGIEATKAQLSELVSKVSADYPDSSFLEPKELQNLHHQQMQKTYPPNSSLDSCLTS 261

[Close]
BLAST of Cp4.1LG08g06680 vs. NCBI nr
Match: gi|778686066|ref|XP_011652324.1| (PREDICTED: uncharacterized protein LOC101206445 isoform X1 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 9.4e-73
Identity = 196/315 (62.22%), Postives = 213/315 (67.62%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTP---RTNNIVV 101
           L KYRLSKN+HGQANGG +G+NKT  GWRVGTVA V  DQRL  EANG     RT+NIVV
Sbjct: 89  LQKYRLSKNLHGQANGG-SGTNKTGTGWRVGTVA-VSVDQRLG-EANGAAAAARTSNIVV 148

Query: 102 APQPSSHPNKSLQISETIQMQIE-------------------------------KAQETL 161
            PQP+S  NKSLQISETIQMQIE                               KAQETL
Sbjct: 149 GPQPTSQSNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETL 208

Query: 162 GRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPEL---QQTQRLC-PQQTQPPDCSMDS 221
           GRQ+LG+VGLEAAKVQLSELVSKVSTQCLTAAFPEL    Q+QR+C  QQ+QPPDCSMDS
Sbjct: 209 GRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSMDS 268

Query: 222 CLTSCE-ASKDQ--QQQQQLLLHNSQHALRPKAI-----VTDH--HGLSMSIGLLQGDKG 281
           CLTS E  SKDQ  QQQQ +LLHNS  ALRP A        DH  HGLSMSIGL+QG+K 
Sbjct: 269 CLTSSEGGSKDQQAQQQQHVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGLVQGEKA 328

Query: 282 G-EGDNGYSPS-----FGSKK-----KEGETAFRYRMAASFLDLNAGEDQQLS---NNDH 295
           G EG NGYS S     FGSK+      E ET FRYRM  +    NAGEDQ +S   NNDH
Sbjct: 329 GPEGYNGYSTSEGQRLFGSKRTKDAVMEKETGFRYRMDLN----NAGEDQLISSNNNNDH 388

[Close]
BLAST of Cp4.1LG08g06680 vs. NCBI nr
Match: gi|659130748|ref|XP_008465330.1| (PREDICTED: uncharacterized protein LOC103502977 isoform X1 [Cucumis melo])

HSP 1 Score: 282.3 bits (721), Expect = 9.4e-73
Identity = 194/322 (60.25%), Postives = 213/322 (66.15%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRL-----AAEANGTPRTNNI 101
           L KYRLSKN+HGQANGG +G+NKT MGWRVGTVA V  DQRL     AA A    RTN+I
Sbjct: 89  LQKYRLSKNLHGQANGG-SGTNKTGMGWRVGTVA-VSVDQRLGEANGAAAAAAAARTNSI 148

Query: 102 VVAPQPSSHPNKSLQISETIQMQIE-------------------------------KAQE 161
           VV PQPSS  NK+LQISETIQMQIE                               KAQE
Sbjct: 149 VVGPQPSSQSNKNLQISETIQMQIEVQKRLHEQLEVQRHLQLRIETQGKYLQTVLEKAQE 208

Query: 162 TLGRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPEL---QQTQRLC-PQQTQPPDCSM 221
           TLGRQ+LG+VGLEAAKVQLSELVSKVSTQCLTAAFPEL    Q+QR+C  QQ+QPPDCSM
Sbjct: 209 TLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSM 268

Query: 222 DSCLTSCE-------ASKDQQQQQQLLLHNSQHALRPKAI-----VTDH--HGLSMSIGL 281
           DSCLTS E       A++ QQQQQQ+LLHNS  ALRP A        DH  HGLSMSIGL
Sbjct: 269 DSCLTSSEGGSKDQQAAQQQQQQQQVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGL 328

Query: 282 LQGDKGG-EGDNGYSPS-----FGSKKK------EGETAFRYRMAASFLDLNAGEDQQL- 295
           +QG+K G E  NGYS S     FGSK+       E ET FRYRM  +    NAGEDQ + 
Sbjct: 329 VQGEKAGTEAYNGYSTSEGQRLFGSKRTTKEAVLEKETGFRYRMDLN----NAGEDQLIS 388

[Close]
BLAST of Cp4.1LG08g06680 vs. NCBI nr
Match: gi|778686069|ref|XP_011652325.1| (PREDICTED: uncharacterized protein LOC101206445 isoform X2 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 5.4e-68
Identity = 192/315 (60.95%), Postives = 209/315 (66.35%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTP---RTNNIVV 101
           L KYRLSKN+HGQANGG +G+NKT      GTVA V  DQRL  EANG     RT+NIVV
Sbjct: 89  LQKYRLSKNLHGQANGG-SGTNKT------GTVA-VSVDQRLG-EANGAAAAARTSNIVV 148

Query: 102 APQPSSHPNKSLQISETIQMQIE-------------------------------KAQETL 161
            PQP+S  NKSLQISETIQMQIE                               KAQETL
Sbjct: 149 GPQPTSQSNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETL 208

Query: 162 GRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPEL---QQTQRLC-PQQTQPPDCSMDS 221
           GRQ+LG+VGLEAAKVQLSELVSKVSTQCLTAAFPEL    Q+QR+C  QQ+QPPDCSMDS
Sbjct: 209 GRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSMDS 268

Query: 222 CLTSCE-ASKDQ--QQQQQLLLHNSQHALRPKAI-----VTDH--HGLSMSIGLLQGDKG 281
           CLTS E  SKDQ  QQQQ +LLHNS  ALRP A        DH  HGLSMSIGL+QG+K 
Sbjct: 269 CLTSSEGGSKDQQAQQQQHVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGLVQGEKA 328

Query: 282 G-EGDNGYSPS-----FGSKK-----KEGETAFRYRMAASFLDLNAGEDQQLS---NNDH 295
           G EG NGYS S     FGSK+      E ET FRYRM  +    NAGEDQ +S   NNDH
Sbjct: 329 GPEGYNGYSTSEGQRLFGSKRTKDAVMEKETGFRYRMDLN----NAGEDQLISSNNNNDH 388

[Close]
BLAST of Cp4.1LG08g06680 vs. NCBI nr
Match: gi|659130752|ref|XP_008465332.1| (PREDICTED: chromatin modification-related protein EAF1 isoform X2 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 2.7e-67
Identity = 189/322 (58.70%), Postives = 208/322 (64.60%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRL-----AAEANGTPRTNNI 101
           L KYRLSKN+HGQANGG +G+NKT      GTVA V  DQRL     AA A    RTN+I
Sbjct: 89  LQKYRLSKNLHGQANGG-SGTNKT------GTVA-VSVDQRLGEANGAAAAAAAARTNSI 148

Query: 102 VVAPQPSSHPNKSLQISETIQMQIE-------------------------------KAQE 161
           VV PQPSS  NK+LQISETIQMQIE                               KAQE
Sbjct: 149 VVGPQPSSQSNKNLQISETIQMQIEVQKRLHEQLEVQRHLQLRIETQGKYLQTVLEKAQE 208

Query: 162 TLGRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPEL---QQTQRLC-PQQTQPPDCSM 221
           TLGRQ+LG+VGLEAAKVQLSELVSKVSTQCLTAAFPEL    Q+QR+C  QQ+QPPDCSM
Sbjct: 209 TLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSM 268

Query: 222 DSCLTSCE-------ASKDQQQQQQLLLHNSQHALRPKAI-----VTDH--HGLSMSIGL 281
           DSCLTS E       A++ QQQQQQ+LLHNS  ALRP A        DH  HGLSMSIGL
Sbjct: 269 DSCLTSSEGGSKDQQAAQQQQQQQQVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGL 328

Query: 282 LQGDKGG-EGDNGYSPS-----FGSKKK------EGETAFRYRMAASFLDLNAGEDQQL- 295
           +QG+K G E  NGYS S     FGSK+       E ET FRYRM  +    NAGEDQ + 
Sbjct: 329 VQGEKAGTEAYNGYSTSEGQRLFGSKRTTKEAVLEKETGFRYRMDLN----NAGEDQLIS 388

[Close]
BLAST of Cp4.1LG08g06680 vs. NCBI nr
Match: gi|590643060|ref|XP_007030697.1| (Homeodomain-like superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 150.2 bits (378), Expect = 5.6e-33
Identity = 106/204 (51.96%), Postives = 122/204 (59.80%), Query Frame = 1 

Query: 42  LTKYRLSKNVHGQANGGGNGSNKTDMGWRVGTVAAVYGDQRLAAEANGTPRTNNIVVAPQ 101
           L KYRLSKN+HGQAN   NGSNK      +G VA   GD+   +EANGT   NN+ + PQ
Sbjct: 96  LQKYRLSKNLHGQAN---NGSNK------IGAVAMA-GDRM--SEANGT-HVNNLSIGPQ 155

Query: 102 PSSHPNKSLQISETIQMQIE-------------------------------KAQETLGRQ 161
                N  LQI E +QMQIE                               KAQETLGRQ
Sbjct: 156 A----NNGLQIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQ 215

Query: 162 DLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQTQ---PPDCSMDSCLTS 212
           +LGSVGLEAAKVQLSELVSKVS QCL +AF +L+  Q LCPQQTQ   P DCSMDSCLTS
Sbjct: 216 NLGSVGLEAAKVQLSELVSKVSNQCLNSAFSDLKDLQGLCPQQTQATPPTDCSMDSCLTS 275

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PHL9_ARATH6.4e-2131.80Myb-related protein 2 OS=Arabidopsis thaliana GN=MYR2 PE=1 SV=1[more]
PHLA_ARATH2.4e-1538.38Myb-related protein 1 OS=Arabidopsis thaliana GN=MYR1 PE=1 SV=1[more]
BLAST of Cp4.1LG08g06680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG98_CUCSA6.6e-7362.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G844850 PE=4 SV=1[more]
F6HLA5_VITVI9.3e-3542.66Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07580 PE=4 SV=... [more]
A0A061F2V1_THECC3.9e-3351.96Homeodomain-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_026448 ... [more]
A0A061F9P8_THECC3.9e-3351.96Homeodomain-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_026448 ... [more]
A0A0D2TNC1_GOSRA1.9e-3240.67Uncharacterized protein OS=Gossypium raimondii GN=B456_007G287500 PE=4 SV=1[more]
BLAST of Cp4.1LG08g06680 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04030.33.6e-2231.80 Homeodomain-like superfamily protein[more]
AT5G18240.11.3e-1638.38 myb-related protein 1[more]
BLAST of Cp4.1LG08g06680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778686066|ref|XP_011652324.1|9.4e-7362.22PREDICTED: uncharacterized protein LOC101206445 isoform X1 [Cucumis sativus][more]
gi|659130748|ref|XP_008465330.1|9.4e-7360.25PREDICTED: uncharacterized protein LOC103502977 isoform X1 [Cucumis melo][more]
gi|778686069|ref|XP_011652325.1|5.4e-6860.95PREDICTED: uncharacterized protein LOC101206445 isoform X2 [Cucumis sativus][more]
gi|659130752|ref|XP_008465332.1|2.7e-6758.70PREDICTED: chromatin modification-related protein EAF1 isoform X2 [Cucumis melo][more]
gi|590643060|ref|XP_007030697.1|5.6e-3351.96Homeodomain-like superfamily protein isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06680.1Cp4.1LG08g06680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31499FAMILY NOT NAMEDcoord: 42..216
score: 2.4
NoneNo IPR availablePANTHERPTHR31499:SF4MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 42..216
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g06680Cucsa.340600Cucumber (Gy14) v1cgycpeB0902
Cp4.1LG08g06680CmaCh06G017370Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g06680CmoCh06G017240Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g06680Cla017179Watermelon (97103) v1cpewmB831
Cp4.1LG08g06680Csa3G844850Cucumber (Chinese Long) v2cpecuB865
Cp4.1LG08g06680MELO3C026896Melon (DHL92) v3.5.1cpemeB798
Cp4.1LG08g06680ClCG10G013290Watermelon (Charleston Gray)cpewcgB769
Cp4.1LG08g06680CSPI03G40860Wild cucumber (PI 183967)cpecpiB867
Cp4.1LG08g06680Lsi03G012900Bottle gourd (USVL1VR-Ls)cpelsiB709
Cp4.1LG08g06680MELO3C026896.2Melon (DHL92) v3.6.1cpemedB939
Cp4.1LG08g06680CsaV3_3G043350Cucumber (Chinese Long) v3cpecucB1061
Cp4.1LG08g06680Bhi11G001288Wax gourdcpewgoB1077
Cp4.1LG08g06680CsGy3G038310Cucumber (Gy14) v2cgybcpeB458
Cp4.1LG08g06680Carg23336Silver-seed gourdcarcpeB0389
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g06680Cp4.1LG03g09290Cucurbita pepo (Zucchini)cpecpeB490
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g06680Cucurbita maxima (Rimu)cmacpeB293