Cp4.1LG08g05980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g05980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEukaryotic translation initiation factor 1A
LocationCp4.1LG08 : 530343 .. 531981 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTAAATTAAAGGAATTAATGATTTTGGGAGAAGAAAAAGAAGAAAACGTATATGGCTCTCTCTCTCTCTCGCCCCGCCCTACCCCATCTTGATAGGACATATGATTCTTTCTTAGTTCAAAGTAAGAAGCAAAAGACTAGAATAAGGAATGGAAATATAGCTGGACAGGACAATATACCACACTTTTGTATCTAATGATTCATCTTGGGGTTTGAAATCTTGATGAAAAGTAATCATGAACCTGAAAGATGATGCCCCAGTTTGAAATTTTTTATTGAACATTCAAATTGCGAGATGGCTCTTCGCAGCTCATGTTAGAAAACTTTTTTTTTCTCTCGCTGCTGCTTTAGTGGCTGGAATGCATCCTTCTGTTCAAGAGTATATTTATCATAATTATGTCCTTTATTTGTTGATTCTTGATGATCGTATATTTATGACATCTTTACATGGAATGTGTGGAATATTATCAGTCACTCTGGTCTGCACCCCTGAGTTGTAGTAGCTAGGTATTGAGGGTACCAATCGTCTTATGGCTGTAAATTTGATCATTAGTTGTTCGTTTTCTTCATCTCATCGTGTGTGGTGGGTGCTTGGGAGTTGACTTCAATTTTCTGAACAATTGCATACCGGAAAAAAAGGGCTTACTTCTAACATTACTGACTCAAAGTGATAAATAGGTGCCTTGCCTGTTCTTGTAAGCTCTGTTTGGACGTTTGGTGCAATTGTTTTGTAATTTCTTTGCTTTCTTTCTGTTTATATTCTGTTTATCTTGATGCTAGTTGTTTAGTTTAGACTGATTTATATTATCTAAATCCTAATTATTTCAAGTGTGCAAAGTTGGAGTTTTACCTCATATTTTCTTAATGGCACGAACAATAACTCTGTATGTTGGTGGTATTGCAACTGCTCATATTGCATTTCAAATGTAACACAGAACAGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGGATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACTCGTCTCAACGAGGGTATTGCTGGTGGCATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAAATTTAGATTTCGAGTAACTTTACATTTGGAGTTCAGAGTTGTGTGGATGGTTTGTTATATGGATTTGCTCCACTGTTGTTGTACCTTGTACTCTCTGCTGGGGGATTGGTATTTATTGCATAAAATCTTATGTTATATATACATATAAATGCGTAATTATATTTGCCTTCTATCTCTATAAGAATAGAGTTTAAATGAGTGATAAGCATGCGTTTTCGATCAGTTTCAGCATTTCGATCCCCCTATCGGCGTTGTTGC

mRNA sequence

ATGATAACAGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGGATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACTCGTCTCAACGAGGGTATTGCTGGTGGCATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAAATTTAGATTTCGAGTAACTTTACATTTGGAGTTCAGAGTTGTGTGGATGGTTTGTTATATGGATTTGCTCCACTGTTGTTGTACCTTGTACTCTCTGCTGGGGGATTGGTATTTATTGCATAAAATCTTATGTTATATATACATATAAATGCGTAATTATATTTGCCTTCTATCTCTATAAGAATAGAGTTTAAATGAGTGATAAGCATGCGTTTTCGATCAGTTTCAGCATTTCGATCCCCCTATCGGCGTTGTTGC

Coding sequence (CDS)

ATGATAACAGAAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAACGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGGATGTTAGGGAATGGTCGGTGTGAGGCGACGTGCATAGATGGGACAAAGCGTCTATGCCATATCCGGGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGCGATATAATACTTGTCGGTCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCCGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACTCGTCTCAACGAGGGTATTGCTGGTGGCATCGACGATGAGGATGATGGTGGTGCTGATGACTATCTTGAGTTCGAGGACGAAGATATCGACAAAATTTAG

Protein sequence

MITENMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI
Homology
[Close]
BLAST of Cp4.1LG08g05980 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 3.2e-69
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI- 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 126 AGGIDDEDDGGADDYLEFEDEDIDKI 151
           AGG+D+E D  A+DY+EFEDEDIDKI
Sbjct: 121 AGGLDEEMD-TANDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-64
Identity = 123/146 (84.25%), Postives = 133/146 (91.10%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 126 GGIDDEDDG-GADDYLEFEDEDIDKI 151
             +D  ++G G  DY++FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]
BLAST of Cp4.1LG08g05980 vs. Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 105/145 (72.41%), Postives = 118/145 (81.38%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEVQFDD-IGDDDEDIDDI 144

[Close]
BLAST of Cp4.1LG08g05980 vs. Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 105/145 (72.41%), Postives = 118/145 (81.38%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]
BLAST of Cp4.1LG08g05980 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 105/145 (72.41%), Postives = 118/145 (81.38%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA C DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]
BLAST of Cp4.1LG08g05980 vs. TrEMBL
Match: A9PE28_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0002s21870g PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.0e-74
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. TrEMBL
Match: A0A061DSN8_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_005216 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.0e-74
Identity = 140/145 (96.55%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GGID+EDDG ADDY+EFEDEDIDKI
Sbjct: 121 GGIDEEDDGAADDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.0e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. TrEMBL
Match: A0A067KF11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.6e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYVEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. TrEMBL
Match: W9RA44_9ROSA (Eukaryotic translation initiation factor 1A OS=Morus notabilis GN=L484_004042 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.4e-73
Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GG++DED+G  DDY+EFEDEDIDKI
Sbjct: 121 GGLEDEDEGAGDDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 269.6 bits (688), Expect = 1.1e-72
Identity = 131/145 (90.34%), Postives = 138/145 (95.17%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           G ++D+DD   DDY+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 244.6 bits (623), Expect = 3.9e-65
Identity = 118/128 (92.19%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+  CIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 126 GGIDDEDD 134
           G +DD+DD
Sbjct: 121 GDLDDDDD 128

[Close]
BLAST of Cp4.1LG08g05980 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 2.0e-74
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. NCBI nr
Match: gi|590721556|ref|XP_007051647.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 285.4 bits (729), Expect = 5.7e-74
Identity = 140/145 (96.55%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GGID+EDDG ADDY+EFEDEDIDKI
Sbjct: 121 GGIDEEDDGAADDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. NCBI nr
Match: gi|224068883|ref|XP_002302848.1| (translation initiation factor eIF-1A family protein [Populus trichocarpa])

HSP 1 Score: 285.4 bits (729), Expect = 5.7e-74
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. NCBI nr
Match: gi|645247435|ref|XP_008229835.1| (PREDICTED: eukaryotic translation initiation factor 1A [Prunus mume])

HSP 1 Score: 284.3 bits (726), Expect = 1.3e-73
Identity = 139/145 (95.86%), Postives = 144/145 (99.31%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GG++DE++GGADDY+EFEDEDIDKI
Sbjct: 121 GGLEDEEEGGADDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG08g05980 vs. NCBI nr
Match: gi|224129090|ref|XP_002320498.1| (translation initiation factor eIF-1A family protein [Populus trichocarpa])

HSP 1 Score: 283.1 bits (723), Expect = 2.8e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1 

Query: 6   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 65
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 66  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 125
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 126 GGIDDEDDGGADDYLEFEDEDIDKI 151
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g05980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF1A_ONOVI3.2e-6991.78Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2[more]
IF1A_WHEAT2.4e-6484.25Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2[more]
IF1AY_PANTR5.2e-5172.41Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN... [more]
IF1AY_HUMAN6.8e-5172.41Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EI... [more]
IF1AX_PONAB6.8e-5172.41Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EI... [more]
BLAST of Cp4.1LG08g05980 vs. TrEMBL
Match NameE-valueIdentityDescription
A9PE28_POPTR4.0e-7495.86Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=PO... [more]
A0A061DSN8_THECC4.0e-7496.55Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_005216 PE=3... [more]
A9PCD3_POPTR2.0e-7395.17Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=PO... [more]
A0A067KF11_JATCU2.6e-7395.17Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1[more]
W9RA44_9ROSA3.4e-7395.17Eukaryotic translation initiation factor 1A OS=Morus notabilis GN=L484_004042 PE... [more]
BLAST of Cp4.1LG08g05980 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04520.11.1e-7290.34 Nucleic acid-binding, OB-fold-like protein[more]
AT5G35680.33.9e-6592.19 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Cp4.1LG08g05980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115631|ref|XP_008457652.1|2.0e-7497.93PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo][more]
gi|590721556|ref|XP_007051647.1|5.7e-7496.55Nucleic acid-binding, OB-fold-like protein [Theobroma cacao][more]
gi|224068883|ref|XP_002302848.1|5.7e-7495.86translation initiation factor eIF-1A family protein [Populus trichocarpa][more]
gi|645247435|ref|XP_008229835.1|1.3e-7395.86PREDICTED: eukaryotic translation initiation factor 1A [Prunus mume][more]
gi|224129090|ref|XP_002320498.1|2.8e-7395.17translation initiation factor eIF-1A family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold
IPR006196RNA-binding_domain_S1_IF1
IPR001253TIF_eIF-1A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05980.1Cp4.1LG08g05980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)PRODOMPD005579coord: 58..114
score: 3.0
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 21..115
score: 18
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 7..150
score: 3.0E
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 33..115
score: 8.9
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMsTIGR00523TIGR00523coord: 19..115
score: 6.3
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 37..98
score: 1.3
IPR006196RNA-binding domain, S1, IF1 typePROFILEPS50832S1_IF1_TYPEcoord: 27..101
score: 31
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 7..149
score: 5.2
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 7..149
score: 1.37
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 46..68
scor
NoneNo IPR availablePANTHERPTHR21668:SF5NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATEDcoord: 7..150
score: 3.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g05980CmaCh06G016500Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g05980CmaCh14G014720Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g05980CmoCh14G015100Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g05980CmoCh06G016520Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g05980Cla010847Watermelon (97103) v1cpewmB840
Cp4.1LG08g05980ClCG07G015640Watermelon (Charleston Gray)cpewcgB791
Cp4.1LG08g05980Lsi07G000440Bottle gourd (USVL1VR-Ls)cpelsiB723
Cp4.1LG08g05980Bhi01G002106Wax gourdcpewgoB1114
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g05980Cp4.1LG03g12770Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g05980Cucumber (Gy14) v1cgycpeB0200
Cp4.1LG08g05980Wild cucumber (PI 183967)cpecpiB871
Cp4.1LG08g05980Cucumber (Chinese Long) v2cpecuB869
Cp4.1LG08g05980Melon (DHL92) v3.5.1cpemeB817
Cp4.1LG08g05980Cucumber (Gy14) v2cgybcpeB575
Cp4.1LG08g05980Melon (DHL92) v3.6.1cpemedB955
Cp4.1LG08g05980Silver-seed gourdcarcpeB0974
Cp4.1LG08g05980Cucumber (Chinese Long) v3cpecucB1065