Cp4.1LG08g03300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g03300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHarpin binding protein 1
LocationCp4.1LG08 : 2131453 .. 2133932 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGTTGCTAACCATTCAATTGATGATTCAGAAAATTTCCCTGTTTTTCTGTTCTTCCCTCGATTATTTTCCCGAGAAACAAACAGTTTCCCTCTCCACTCAATCAACACACCCATGGCTGCGCTAGCGAGCTCTGTGCTTCACTCGCCACTCCAGATCTGTTCTTCCGATTGTTCTTCTTCTGGGTTTCTATCTCCATCCAGAATCCATGGGTTTGCACCCAGTTTCAAGCTCAAGTGTTCCAGCCGCCGGCCTCTGCTTTCCGGCGACGGCCGACCCAGAAGAAGTTGCTATTTGAAGTCGGCTTCCGATTCCCCTCCTTCTCTTGATGATGATTCCAAGGCTAACTCTGAACTCCTTGCATCCTTGAAGCTCAAGCTACTGGTGGGTCTCTCTTTTGCCTCTCATTCCTCTGTTTCAATTGATTGATTGAAAGTGGGTGTCAACAGTGAAGAACATATGAAAGTGGGTGTCGAGGATTGTTGGGAGGGAGTCCCAATGAGTGGTTATCTCAAATTGGACAATATCATACTATCGTGGAGATCTGTGATTCCTAACTTGCTCTTCTTTTTCATTATACTAGAGTGCGGTTTCCGGGTTAAATAGAGGTCTTGCTGCAAACGAGGATGATTTACAGAAGGCAGATGAGGCTGCTAAAGAGATTGAAGCTGCTGGAGGGCCTGTGGACCTCTCTGTTGATCTTGACAAATTGCAAGGGAGATGGAAACTGATATACAGTAGTGCATTCTCGTCTCGCACTCTAGGCGGAAGTCGACCGGGACCTCCCACGGGAAGGCTACTTCCGATCACTCTTGGTCAGGTGCAGTATTTCTGATTTCTATTGTCGTTGGTCGTTTCTCAATTCTATCTCTACTATAGAACCGGACACGAGTGCTTCTTCTTCTCATACAACTTCCAAACAAAATGACTAACAAAACTTATTTAGTGAACAATGTTCGTTTTCCTTCATGTTTGTGTTGAGGATTGCTGGGAAGGAGTCCCACGTTAGCTAATTTAAGGAACGATCATGGGTTTATAAGTAAGAAACACATCTCCNGAACAATGTTCGTTTTCCTTCATGTTTGTGTTGAGGATTGCTAGGAAGGAGTCCCACGTTAGCTAATTTAAGGAACGATCCTCGGTCTATAAGTAAGAAACACATCTCCATTGGTATGAGGCCTTTTGGGGNTGAGGCATTTTGGGGAAGCCCAAAGTAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATAGCATTGTGGAGAGTCGTGATTCTTAACATGGTATCAGAGCTATGCCCTTAACTTAGTCATGTCAATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGCCTCGAAAGTGTAGTCAAAAGTGACTCAAGTATTGAATAGAGAGTGTACTTTATTTGAGGGCTCCAGAGAAAGAGTTGAACCTTGATTAAGGGGAGGTTGTTCGAGGGCTCCATAAGCTTCAGGGAAGGCTCTATAGGGTACTTTGTTCGAGAGGAGGATTGTTGGGAAAGGAGTCCCACATCGACTAATTAAGGGGCTGATCATAGGTTTATAAGTAAGGAATACATCTCCTTTGGTATGAGGCGTTTTAGGAAAACCAAAAGTAAAGTCATGATAGCTTATGCTCAAAGAGAACCCTTGTGGTTTCTAACAAGGTTGACTTTCAAATTTCCATCAATAGGTTTTTCAGCGGATCGACGNGAAGTTGTGAGTCTCGAAAGTGTAGTCAAAAGTGACTCAAGTATTGAATAAAGAGTGTACTTTGTTTGAGGGCTCTAGAGAAAGAGTTGAACCTTGATTAAGGAGAGGCTGTTCGAGGGCTCCATAAGCCTCAGGAAAGGCTCTATAGGGTACTTTGTTCAAGAGGAGGATTGTTGGGAAAAGAGTCCCACATCGACTAATTGAGGCGTTTTAGGAAAACCAAAAGTAAAGTCATGATAGTTTATGCTCAAAGAGAACCCTCGTGGTTTCTAACAAGGTTGACTTGCAAATTTCCATCAATAGGTTTTTCAGCGGATCGACGTCATCAGCAAAGATTTCGATAACATCGTAGAGCTCGAGTTAGGTGCTCCTTGGCCACTACCTCCTGCTGAAGTCACTGCTACATTAGCTCACGTGTTTGAAATCATAGGTTGGTTCTCTAAGGATATTCCTTTCCTTGTGGTGCTACAATTACAAGGCCATTGCTATGCAACTTCCCATTTCTTAACCAGAAGAATTGTTCTATTGTCTACTTGTACTGAGATCAGGTTCTGCTAAGATAAAGATAACTTTTCAGAAAACCACCGTGAAAGCCACTGGAAACTTGTCACAGCTTCCTCCATTAGAGGTACCTCGGCTTCCAGATGCGCTAAGGCCTCCATCCAACACTGGAAGTGGCGACTTTGAAGTCACTTACCTTGACAATGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGAGTGTTTGTTATTTCATAA

mRNA sequence

CACCGTTGCTAACCATTCAATTGATGATTCAGAAAATTTCCCTGTTTTTCTGTTCTTCCCTCGATTATTTTCCCGAGAAACAAACAGTTTCCCTCTCCACTCAATCAACACACCCATGGCTGCGCTAGCGAGCTCTGTGCTTCACTCGCCACTCCAGATCTGTTCTTCCGATTGTTCTTCTTCTGGGTTTCTATCTCCATCCAGAATCCATGGGTTTGCACCCAGTTTCAAGCTCAAGTGTTCCAGCCGCCGGCCTCTGCTTTCCGGCGACGGCCGACCCAGAAGAAGTTGCTATTTGAAGTCGGCTTCCGATTCCCCTCCTTCTCTTGATGATGATTCCAAGGCTAACTCTGAACTCCTTGCATCCTTGAAGCTCAAGCTACTGAAGGCAGATGAGGCTGCTAAAGAGATTGAAGCTGCTGGAGGGCCTGTGGACCTCTCTGTTGATCTTGACAAATTGCAAGGGAGATGGAAACTGATATACAGTAGTGCATTCTCGTCTCGCACTCTAGGCGGAAGTCGACCGGGACCTCCCACGGGAAGGCTACTTCCGATCACTCTTGGTCAGCGGATCGACGTCATCAGCAAAGATTTCGATAACATCGTAGAGCTCGAGTTAGGTGCTCCTTGGCCACTACCTCCTGCTGAAGTCACTGCTACATTAGCTCACGTGTTTGAAATCATAGGTTCTGCTAAGATAAAGATAACTTTTCAGAAAACCACCGTGAAAGCCACTGGAAACTTGTCACAGCTTCCTCCATTAGAGGTACCTCGGCTTCCAGATGCGCTAAGGCCTCCATCCAACACTGGAAGTGGCGACTTTGAAGTCACTTACCTTGACAATGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGAGTGTTTGTTATTTCATAA

Coding sequence (CDS)

ATGGCTGCGCTAGCGAGCTCTGTGCTTCACTCGCCACTCCAGATCTGTTCTTCCGATTGTTCTTCTTCTGGGTTTCTATCTCCATCCAGAATCCATGGGTTTGCACCCAGTTTCAAGCTCAAGTGTTCCAGCCGCCGGCCTCTGCTTTCCGGCGACGGCCGACCCAGAAGAAGTTGCTATTTGAAGTCGGCTTCCGATTCCCCTCCTTCTCTTGATGATGATTCCAAGGCTAACTCTGAACTCCTTGCATCCTTGAAGCTCAAGCTACTGAAGGCAGATGAGGCTGCTAAAGAGATTGAAGCTGCTGGAGGGCCTGTGGACCTCTCTGTTGATCTTGACAAATTGCAAGGGAGATGGAAACTGATATACAGTAGTGCATTCTCGTCTCGCACTCTAGGCGGAAGTCGACCGGGACCTCCCACGGGAAGGCTACTTCCGATCACTCTTGGTCAGCGGATCGACGTCATCAGCAAAGATTTCGATAACATCGTAGAGCTCGAGTTAGGTGCTCCTTGGCCACTACCTCCTGCTGAAGTCACTGCTACATTAGCTCACGTGTTTGAAATCATAGGTTCTGCTAAGATAAAGATAACTTTTCAGAAAACCACCGTGAAAGCCACTGGAAACTTGTCACAGCTTCCTCCATTAGAGGTACCTCGGCTTCCAGATGCGCTAAGGCCTCCATCCAACACTGGAAGTGGCGACTTTGAAGTCACTTACCTTGACAATGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGAGTGTTTGTTATTTCATAA

Protein sequence

MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCYLKSASDSPPSLDDDSKANSELLASLKLKLLKADEAAKEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQRIDVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS
Homology
[Close]
BLAST of Cp4.1LG08g03300 vs. Swiss-Prot
Match: PAP6_ARATH (Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.8e-73
Identity = 158/284 (55.63%), Postives = 192/284 (67.61%), Query Frame = 1 

Query: 6   SSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCS-------SRRPLLSGDGRPRRS 65
           SS+L SP  + S   S      PS  + F+P    K S        +R L +       S
Sbjct: 8   SSLLPSPPALLSDHRSPP----PSIRYSFSPLTTPKSSRLGFTVPEKRNLAANSSLVEVS 67

Query: 66  CYLKSASDSPPSLDDDSKANSELLASLKLKLL------------------KADEAAKEIE 125
             +   SD PPS    S  + + +A LKLKLL                  +A+ AAKE+E
Sbjct: 68  --IGGESDPPPS-SSGSGGDDKQIALLKLKLLSVVSGLNRGLVASVDDLERAEVAAKELE 127

Query: 126 AAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RIDVIS 185
            AGGPVDL+ DLDKLQG+W+L+YSSAFSSR+LGGSRPG PTGRL+P+TLGQ   RIDV S
Sbjct: 128 TAGGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFS 187

Query: 186 KDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQLPPLE 245
           KDFDNI E+ELGAPWP PP E TATLAH FE++G+ KIKITF+KTTVK +GNLSQ+PP +
Sbjct: 188 KDFDNIAEVELGAPWPFPPLEATATLAHKFELLGTCKIKITFEKTTVKTSGNLSQIPPFD 247

Query: 246 VPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           +PRLPD+ RP SN G+GDFEVTY+D+  RITRGDRGELRVFVI+
Sbjct: 248 IPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDRGELRVFVIA 284

[Close]
BLAST of Cp4.1LG08g03300 vs. TrEMBL
Match: A0A0A0L4C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134880 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 7.5e-105
Identity = 218/290 (75.17%), Postives = 229/290 (78.97%), Query Frame = 1 

Query: 1   MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCY 60
           MAALASS+L S LQI +SD SS G L PS IH  APSF LKCS    L S DG PRR   
Sbjct: 1   MAALASSLLQSSLQIRTSD-SSFGSLFPSTIHRIAPSFNLKCSRLHSLFSLDGGPRRILS 60

Query: 61  LKSAS--------DSPPSLDDDSKANSELLASLKLKLL------------------KADE 120
           LKS S         + PS+ D+ +A SELLASLK+KLL                  KADE
Sbjct: 61  LKSVSVNVYADPASASPSVVDEYQAKSELLASLKVKLLTAVSGLNRGLAADEDDLQKADE 120

Query: 121 AAKEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ--- 180
           AAKEIEA GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   
Sbjct: 121 AAKEIEAVGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQ 180

Query: 181 RIDVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLS 240
           RID+ISKDFDNIVELELGAPWPLPPAEVTATLAH FEIIGSAKIKI F+KTTVK TGNLS
Sbjct: 181 RIDIISKDFDNIVELELGAPWPLPPAEVTATLAHKFEIIGSAKIKIIFEKTTVKTTGNLS 240

Query: 241 QLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           QLPPLEVPR+PDALRPPSNTGSG+FEVTYLDND RITRGDRGELRVFVIS
Sbjct: 241 QLPPLEVPRIPDALRPPSNTGSGEFEVTYLDNDIRITRGDRGELRVFVIS 289

[Close]
BLAST of Cp4.1LG08g03300 vs. TrEMBL
Match: A5BX97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002805 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85
Identity = 187/288 (64.93%), Postives = 209/288 (72.57%), Query Frame = 1 

Query: 7   SVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRR-------PLLSGDGRPRRSC 66
           S+  SP    SS  SSS   S   I    PS  L+ S RR       P     G P+RS 
Sbjct: 12  SLSPSPPPPLSSSSSSSSSSSTITITCALPS-NLRSSDRRRLRTTSKPYTWTSGLPKRSF 71

Query: 67  YLKSASDS-----PPSLDDDSKANSELLASLKLKLL------------------KADEAA 126
            L+S  D      PP   +DS A  +LL+SLKLKLL                  KAD AA
Sbjct: 72  VLRSTLDEVSVLDPPPPPEDSTA--DLLSSLKLKLLSTVSGLNRGLAAIEDDLQKADAAA 131

Query: 127 KEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RI 186
           KE+EAAGG VDLS+DLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   RI
Sbjct: 132 KELEAAGGTVDLSIDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 191

Query: 187 DVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQL 246
           D++SKDFDNIV+L++GAPWPLPP E+TATLAH FE+IG++ IKITF+KTTVK TGNLSQL
Sbjct: 192 DIVSKDFDNIVDLQIGAPWPLPPIELTATLAHKFELIGTSSIKITFEKTTVKTTGNLSQL 251

Query: 247 PPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           PPLEVPR+PDALRPPSNTGSG+FEVTYLD DTRITRGDRGELRVFVI+
Sbjct: 252 PPLEVPRIPDALRPPSNTGSGEFEVTYLDADTRITRGDRGELRVFVIA 296

[Close]
BLAST of Cp4.1LG08g03300 vs. TrEMBL
Match: D7SZJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01360 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 6.6e-85
Identity = 183/286 (63.99%), Postives = 212/286 (74.13%), Query Frame = 1 

Query: 7   SVLHSPLQICSSDCSSSGFLS-----PSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCYL 66
           S+  SP    SS  SSS  ++     PS +   +   +L+ +S+ P     G P+RS  L
Sbjct: 12  SLSPSPPPPLSSSSSSSSTITITCALPSNLRS-SDRRRLRTTSK-PYTWTSGLPKRSFVL 71

Query: 67  KSASDS-----PPSLDDDSKANSELLASLKLKLL------------------KADEAAKE 126
           +S  D      PP   +DS A  +LL+SLKLKLL                  KAD AAKE
Sbjct: 72  RSTLDEVSVLDPPPPPEDSTA--DLLSSLKLKLLSAVSGLNRGLAAIEDDLQKADAAAKE 131

Query: 127 IEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RIDV 186
           +EAAGG VDLS+DLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   RID+
Sbjct: 132 LEAAGGTVDLSIDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDI 191

Query: 187 ISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQLPP 246
           +SKDFDNIV+L++GAPWPLPP E+TATLAH FE+IG++ IKITF+KTTVK TGNLSQLPP
Sbjct: 192 VSKDFDNIVDLQIGAPWPLPPIELTATLAHKFELIGTSSIKITFEKTTVKTTGNLSQLPP 251

Query: 247 LEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           LEVPR+PDALRPPSNTGSG+FEVTYLD DTRITRGDRGELRVFVI+
Sbjct: 252 LEVPRIPDALRPPSNTGSGEFEVTYLDADTRITRGDRGELRVFVIA 293

[Close]
BLAST of Cp4.1LG08g03300 vs. TrEMBL
Match: Q5QJA3_9ROSI (Harpin binding protein 1 OS=Vitis sp. NL-2003 GN=HrBP1-2 PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 6.6e-85
Identity = 171/245 (69.80%), Postives = 194/245 (79.18%), Query Frame = 1 

Query: 43  SSRRPLLSGDGRPRRSCYLKSASDS-----PPSLDDDSKANSELLASLKLKLL------- 102
           ++ +P     G P+RS  L+S  D      PP   +DS A  +LL+SLKLKLL       
Sbjct: 50  TTSKPYTWTSGLPKRSFVLRSTLDEVSVLDPPPPPEDSTA--DLLSSLKLKLLSTVSGLN 109

Query: 103 -----------KADEAAKEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGP 162
                      KAD AAKE+EAAGG VDLS+DLDKLQGRWKLIYSSAFSSRTLGGSRPGP
Sbjct: 110 RGLAAIEDDLQKADAAAKELEAAGGTVDLSIDLDKLQGRWKLIYSSAFSSRTLGGSRPGP 169

Query: 163 PTGRLLPITLGQ---RIDVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIK 222
           PTGRLLPITLGQ   RID++SKDFDNIV+L++GAPWPLPP E+TATLAH FE+IG++ IK
Sbjct: 170 PTGRLLPITLGQVFQRIDIVSKDFDNIVDLQIGAPWPLPPIELTATLAHKFELIGTSSIK 229

Query: 223 ITFQKTTVKATGNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELR 262
           ITF+KTTVK TGNLSQLPPLEVPR+PDALRPPSNTGSG+FEVTYLD DTRITRGDRGELR
Sbjct: 230 ITFEKTTVKTTGNLSQLPPLEVPRIPDALRPPSNTGSGEFEVTYLDADTRITRGDRGELR 289

[Close]
BLAST of Cp4.1LG08g03300 vs. TrEMBL
Match: A0A061EM25_THECC (Plastid-lipid associated protein PAP / fibrillin family protein OS=Theobroma cacao GN=TCM_020932 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 6.6e-85
Identity = 187/288 (64.93%), Postives = 209/288 (72.57%), Query Frame = 1 

Query: 1   MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRP--RRS 60
           MA+L SS+L +P  I SS  +S+             S  L+      L+  D RP  +RS
Sbjct: 1   MASL-SSILQTPTSIVSSSSTSN-------------SLNLQQKGFPFLVKVDRRPERKRS 60

Query: 61  CYLKSASDSPPSLDD----DSKANSELLASLKLKLL------------------KADEAA 120
             LKSA D    LD        A SEL+ASLKLKLL                  KAD A+
Sbjct: 61  FVLKSALDEVNVLDPPPPPSENAKSELIASLKLKLLSIVSGLNRGLAASEDDIQKADAAS 120

Query: 121 KEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RI 180
           KE+EA  GPVDLS DLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   RI
Sbjct: 121 KELEAVAGPVDLSSDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180

Query: 181 DVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQL 240
           DV+SKDFDNIVELELGAPWPLPP EVTATLAH FE++GSA IKITF+KT+VK  GNLSQL
Sbjct: 181 DVLSKDFDNIVELELGAPWPLPPLEVTATLAHKFELLGSANIKITFEKTSVKTKGNLSQL 240

Query: 241 PPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           PPLE+PR+PDALRPPSNTGSG+FEVT++D+DTRITRGDRGELRVFVIS
Sbjct: 241 PPLELPRIPDALRPPSNTGSGEFEVTFVDSDTRITRGDRGELRVFVIS 274

[Close]
BLAST of Cp4.1LG08g03300 vs. TAIR10
Match: AT3G23400.1 (AT3G23400.1 Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 276.2 bits (705), Expect = 2.1e-74
Identity = 158/284 (55.63%), Postives = 192/284 (67.61%), Query Frame = 1 

Query: 6   SSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCS-------SRRPLLSGDGRPRRS 65
           SS+L SP  + S   S      PS  + F+P    K S        +R L +       S
Sbjct: 8   SSLLPSPPALLSDHRSPP----PSIRYSFSPLTTPKSSRLGFTVPEKRNLAANSSLVEVS 67

Query: 66  CYLKSASDSPPSLDDDSKANSELLASLKLKLL------------------KADEAAKEIE 125
             +   SD PPS    S  + + +A LKLKLL                  +A+ AAKE+E
Sbjct: 68  --IGGESDPPPS-SSGSGGDDKQIALLKLKLLSVVSGLNRGLVASVDDLERAEVAAKELE 127

Query: 126 AAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RIDVIS 185
            AGGPVDL+ DLDKLQG+W+L+YSSAFSSR+LGGSRPG PTGRL+P+TLGQ   RIDV S
Sbjct: 128 TAGGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFS 187

Query: 186 KDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQLPPLE 245
           KDFDNI E+ELGAPWP PP E TATLAH FE++G+ KIKITF+KTTVK +GNLSQ+PP +
Sbjct: 188 KDFDNIAEVELGAPWPFPPLEATATLAHKFELLGTCKIKITFEKTTVKTSGNLSQIPPFD 247

Query: 246 VPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           +PRLPD+ RP SN G+GDFEVTY+D+  RITRGDRGELRVFVI+
Sbjct: 248 IPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDRGELRVFVIA 284

[Close]
BLAST of Cp4.1LG08g03300 vs. NCBI nr
Match: gi|659076093|ref|XP_008438497.1| (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis melo])

HSP 1 Score: 407.9 bits (1047), Expect = 1.3e-110
Identity = 226/289 (78.20%), Postives = 235/289 (81.31%), Query Frame = 1 

Query: 1   MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCY 60
           MAALASSVL SPLQI +SD SS G L  SRIH  APSF LKCS R+ L SGDG  RR+  
Sbjct: 1   MAALASSVLQSPLQIRTSD-SSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGDGGSRRNLS 60

Query: 61  LKSAS-------DSPPSLDDDSKANSELLASLKLKLL------------------KADEA 120
           LKS S        SPPS+ D+ KA SELLASLK+KLL                  KADEA
Sbjct: 61  LKSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEA 120

Query: 121 AKEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---R 180
           AKEIEA GGPVDLS DLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   R
Sbjct: 121 AKEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 180

Query: 181 IDVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQ 240
           ID+ISKDFDNIVELELGAPWPLPPAEVTATLAH FEIIGSAKIKITF+KTTVK TGNLSQ
Sbjct: 181 IDIISKDFDNIVELELGAPWPLPPAEVTATLAHKFEIIGSAKIKITFEKTTVKTTGNLSQ 240

Query: 241 LPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           LPPLEVPR+PDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS
Sbjct: 241 LPPLEVPRIPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 288

[Close]
BLAST of Cp4.1LG08g03300 vs. NCBI nr
Match: gi|449432530|ref|XP_004134052.1| (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis sativus])

HSP 1 Score: 388.3 bits (996), Expect = 1.1e-104
Identity = 218/290 (75.17%), Postives = 229/290 (78.97%), Query Frame = 1 

Query: 1   MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCY 60
           MAALASS+L S LQI +SD SS G L PS IH  APSF LKCS    L S DG PRR   
Sbjct: 1   MAALASSLLQSSLQIRTSD-SSFGSLFPSTIHRIAPSFNLKCSRLHSLFSLDGGPRRILS 60

Query: 61  LKSAS--------DSPPSLDDDSKANSELLASLKLKLL------------------KADE 120
           LKS S         + PS+ D+ +A SELLASLK+KLL                  KADE
Sbjct: 61  LKSVSVNVYADPASASPSVVDEYQAKSELLASLKVKLLTAVSGLNRGLAADEDDLQKADE 120

Query: 121 AAKEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ--- 180
           AAKEIEA GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   
Sbjct: 121 AAKEIEAVGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQ 180

Query: 181 RIDVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLS 240
           RID+ISKDFDNIVELELGAPWPLPPAEVTATLAH FEIIGSAKIKI F+KTTVK TGNLS
Sbjct: 181 RIDIISKDFDNIVELELGAPWPLPPAEVTATLAHKFEIIGSAKIKIIFEKTTVKTTGNLS 240

Query: 241 QLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           QLPPLEVPR+PDALRPPSNTGSG+FEVTYLDND RITRGDRGELRVFVIS
Sbjct: 241 QLPPLEVPRIPDALRPPSNTGSGEFEVTYLDNDIRITRGDRGELRVFVIS 289

[Close]
BLAST of Cp4.1LG08g03300 vs. NCBI nr
Match: gi|147833017|emb|CAN66121.1| (hypothetical protein VITISV_002805 [Vitis vinifera])

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 187/288 (64.93%), Postives = 209/288 (72.57%), Query Frame = 1 

Query: 7   SVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRR-------PLLSGDGRPRRSC 66
           S+  SP    SS  SSS   S   I    PS  L+ S RR       P     G P+RS 
Sbjct: 12  SLSPSPPPPLSSSSSSSSSSSTITITCALPS-NLRSSDRRRLRTTSKPYTWTSGLPKRSF 71

Query: 67  YLKSASDS-----PPSLDDDSKANSELLASLKLKLL------------------KADEAA 126
            L+S  D      PP   +DS A  +LL+SLKLKLL                  KAD AA
Sbjct: 72  VLRSTLDEVSVLDPPPPPEDSTA--DLLSSLKLKLLSTVSGLNRGLAAIEDDLQKADAAA 131

Query: 127 KEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RI 186
           KE+EAAGG VDLS+DLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   RI
Sbjct: 132 KELEAAGGTVDLSIDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 191

Query: 187 DVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQL 246
           D++SKDFDNIV+L++GAPWPLPP E+TATLAH FE+IG++ IKITF+KTTVK TGNLSQL
Sbjct: 192 DIVSKDFDNIVDLQIGAPWPLPPIELTATLAHKFELIGTSSIKITFEKTTVKTTGNLSQL 251

Query: 247 PPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           PPLEVPR+PDALRPPSNTGSG+FEVTYLD DTRITRGDRGELRVFVI+
Sbjct: 252 PPLEVPRIPDALRPPSNTGSGEFEVTYLDADTRITRGDRGELRVFVIA 296

[Close]
BLAST of Cp4.1LG08g03300 vs. NCBI nr
Match: gi|590659627|ref|XP_007035179.1| (Plastid-lipid associated protein PAP / fibrillin family protein [Theobroma cacao])

HSP 1 Score: 322.0 bits (824), Expect = 9.5e-85
Identity = 187/288 (64.93%), Postives = 209/288 (72.57%), Query Frame = 1 

Query: 1   MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRP--RRS 60
           MA+L SS+L +P  I SS  +S+             S  L+      L+  D RP  +RS
Sbjct: 1   MASL-SSILQTPTSIVSSSSTSN-------------SLNLQQKGFPFLVKVDRRPERKRS 60

Query: 61  CYLKSASDSPPSLDD----DSKANSELLASLKLKLL------------------KADEAA 120
             LKSA D    LD        A SEL+ASLKLKLL                  KAD A+
Sbjct: 61  FVLKSALDEVNVLDPPPPPSENAKSELIASLKLKLLSIVSGLNRGLAASEDDIQKADAAS 120

Query: 121 KEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RI 180
           KE+EA  GPVDLS DLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   RI
Sbjct: 121 KELEAVAGPVDLSSDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180

Query: 181 DVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQL 240
           DV+SKDFDNIVELELGAPWPLPP EVTATLAH FE++GSA IKITF+KT+VK  GNLSQL
Sbjct: 181 DVLSKDFDNIVELELGAPWPLPPLEVTATLAHKFELLGSANIKITFEKTSVKTKGNLSQL 240

Query: 241 PPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           PPLE+PR+PDALRPPSNTGSG+FEVT++D+DTRITRGDRGELRVFVIS
Sbjct: 241 PPLELPRIPDALRPPSNTGSGEFEVTFVDSDTRITRGDRGELRVFVIS 274

[Close]
BLAST of Cp4.1LG08g03300 vs. NCBI nr
Match: gi|225433191|ref|XP_002285326.1| (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Vitis vinifera])

HSP 1 Score: 322.0 bits (824), Expect = 9.5e-85
Identity = 183/286 (63.99%), Postives = 212/286 (74.13%), Query Frame = 1 

Query: 7   SVLHSPLQICSSDCSSSGFLS-----PSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCYL 66
           S+  SP    SS  SSS  ++     PS +   +   +L+ +S+ P     G P+RS  L
Sbjct: 12  SLSPSPPPPLSSSSSSSSTITITCALPSNLRS-SDRRRLRTTSK-PYTWTSGLPKRSFVL 71

Query: 67  KSASDS-----PPSLDDDSKANSELLASLKLKLL------------------KADEAAKE 126
           +S  D      PP   +DS A  +LL+SLKLKLL                  KAD AAKE
Sbjct: 72  RSTLDEVSVLDPPPPPEDSTA--DLLSSLKLKLLSAVSGLNRGLAAIEDDLQKADAAAKE 131

Query: 127 IEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ---RIDV 186
           +EAAGG VDLS+DLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQ   RID+
Sbjct: 132 LEAAGGTVDLSIDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDI 191

Query: 187 ISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQLPP 246
           +SKDFDNIV+L++GAPWPLPP E+TATLAH FE+IG++ IKITF+KTTVK TGNLSQLPP
Sbjct: 192 VSKDFDNIVDLQIGAPWPLPPIELTATLAHKFELIGTSSIKITFEKTTVKTTGNLSQLPP 251

Query: 247 LEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 262
           LEVPR+PDALRPPSNTGSG+FEVTYLD DTRITRGDRGELRVFVI+
Sbjct: 252 LEVPRIPDALRPPSNTGSGEFEVTYLDADTRITRGDRGELRVFVIA 293

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g03300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PAP6_ARATH3.8e-7355.63Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thalia... [more]
BLAST of Cp4.1LG08g03300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4C7_CUCSA7.5e-10575.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134880 PE=4 SV=1[more]
A5BX97_VITVI1.0e-8564.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002805 PE=4 SV=1[more]
D7SZJ5_VITVI6.6e-8563.99Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01360 PE=4 SV=... [more]
Q5QJA3_9ROSI6.6e-8569.80Harpin binding protein 1 OS=Vitis sp. NL-2003 GN=HrBP1-2 PE=2 SV=1[more]
A0A061EM25_THECC6.6e-8564.93Plastid-lipid associated protein PAP / fibrillin family protein OS=Theobroma cac... [more]
BLAST of Cp4.1LG08g03300 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23400.12.1e-7455.63 Plastid-lipid associated protein PAP / fibrillin family protein[more]
BLAST of Cp4.1LG08g03300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076093|ref|XP_008438497.1|1.3e-11078.20PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis m... [more]
gi|449432530|ref|XP_004134052.1|1.1e-10475.17PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis s... [more]
gi|147833017|emb|CAN66121.1|1.5e-8564.93hypothetical protein VITISV_002805 [Vitis vinifera][more]
gi|590659627|ref|XP_007035179.1|9.5e-8564.93Plastid-lipid associated protein PAP / fibrillin family protein [Theobroma cacao... [more]
gi|225433191|ref|XP_002285326.1|9.5e-8563.99PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Vitis vin... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010193 response to ozone
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0016020 membrane
cellular_component GO:0044436 thylakoid part
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g03300.1Cp4.1LG08g03300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006843Plastid lipid-associated protein/fibrillin conserved domainPFAMPF04755PAP_fibrillincoord: 89..258
score: 1.9
NoneNo IPR availableunknownCoilCoilcoord: 82..102
scor
NoneNo IPR availablePANTHERPTHR31906FAMILY NOT NAMEDcoord: 54..261
score: 2.3E
NoneNo IPR availablePANTHERPTHR31906:SF15SUBFAMILY NOT NAMEDcoord: 54..261
score: 2.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g03300Cucsa.255550Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g03300CmaCh06G013120Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g03300CmoCh06G013200Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g03300Cla021506Watermelon (97103) v1cpewmB845
Cp4.1LG08g03300Csa3G134880Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g03300MELO3C006407Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g03300ClCG05G004210Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g03300CSPI03G11790Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g03300Lsi05G017460Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g03300MELO3C006407.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g03300CsaV3_3G011940Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g03300Bhi01G000509Wax gourdcpewgoB1112
Cp4.1LG08g03300CsGy3G011910Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g03300Carg06231Silver-seed gourdcarcpeB1333
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g03300Cp4.1LG00g05090Cucurbita pepo (Zucchini)cpecpeB017
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g03300Cucumber (Gy14) v1cgycpeB1012
Cp4.1LG08g03300Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g03300Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g03300Cucurbita maxima (Rimu)cmacpeB554
Cp4.1LG08g03300Cucurbita maxima (Rimu)cmacpeB650
Cp4.1LG08g03300Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g03300Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g03300Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g03300Cucurbita moschata (Rifu)cmocpeB507
Cp4.1LG08g03300Cucurbita moschata (Rifu)cmocpeB599
Cp4.1LG08g03300Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g03300Wild cucumber (PI 183967)cpecpiB851
Cp4.1LG08g03300Cucumber (Chinese Long) v2cpecuB849
Cp4.1LG08g03300Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g03300Bottle gourd (USVL1VR-Ls)cpelsiB716
Cp4.1LG08g03300Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g03300Watermelon (Charleston Gray)cpewcgB792
Cp4.1LG08g03300Watermelon (97103) v1cpewmB841
Cp4.1LG08g03300Watermelon (97103) v1cpewmB853
Cp4.1LG08g03300Melon (DHL92) v3.5.1cpemeB803
Cp4.1LG08g03300Melon (DHL92) v3.5.1cpemeB804
Cp4.1LG08g03300Cucumber (Gy14) v2cgybcpeB278
Cp4.1LG08g03300Melon (DHL92) v3.6.1cpemedB944
Cp4.1LG08g03300Silver-seed gourdcarcpeB0329
Cp4.1LG08g03300Silver-seed gourdcarcpeB0336
Cp4.1LG08g03300Silver-seed gourdcarcpeB1101
Cp4.1LG08g03300Silver-seed gourdcarcpeB1507
Cp4.1LG08g03300Cucumber (Chinese Long) v3cpecucB1045
Cp4.1LG08g03300Wax gourdcpewgoB1100
Cp4.1LG08g03300Wax gourdcpewgoB1118
Cp4.1LG08g03300Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g03300Cucurbita pepo (Zucchini)cpecpeB284
Cp4.1LG08g03300Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g03300Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g03300Cucurbita pepo (Zucchini)cpecpeB507