Cp4.1LG08g02270 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g02270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionReplication factor C subunit, putative
LocationCp4.1LG08 : 2949803 .. 2951084 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGAGAATCGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCTTTGGAGGCTTCGTGGAAAAAAAGGTTAGGAATTTATTTTTAATTTTTTAAATTATTATTATTATTATTATTATTATTTAATAATAAATTGAGGTTTTGATGAAGAAATTAATTATTAATTTGCAGTCGATTGTTTGAAGAAGATGAGAATAAATTGTTGACGGGTTGGGAAGATGATATTGCAGATGTTGCTAAGAAGATCGTCGAGGAGCAAAGCCCAAAACAGTAATTTTACATCTCTCACCATTATTCAAATATTATTTTTCATTAAAAGATTTTAGAATTTCTACCAAAATTAAAAATTAAAAACCATTCTTTAGGTTTGGTTGATAACTATTTTATTATTTTTTCTATATATATATATATATATATATATATATATATATATATATATCTTAAATATTTGAATTATTTACCAAATTCTAAAAATAATTTTTTTTAAAAAAATTATTTATTAGTTTTTAAATGTAAAACAATAAAAGTAAGTGAAAATGGTATTTATGGGAATAATTTAAAAAGAAAAAAGAAAAAAGAACCCATATAATTATCAACCACAGTCTTAATTTTCAAATTTTTGTTTGGTTTTTAAAAATATTTTTAATTAAGGGGTGTTAATTAAAAATAAAAAATAAACTCTACAATAATAATAATAATAATAATTATTTTTAATTTTTCTTTTTCTAATTCTAACAAATATAAAAATAAATAAAATTTAAAATTTTCTTAGAAGCAAAGTTTATTTGTTGGTGCAGGCTGTATATTGTTCGTGGAAAGCTAAAAAAGCTTATTGAATACGATGTCTCCCCCAATTTCATTTTTAAGGTAAATTCTTATTTATTTTTCCCATTTTTTTTAAATTATTAAATAAACAAATAATTATTTTATTGAGATTTCTTTTTCTAGTTCATAATGAATGTATGTACGTACAGACTCTAGTAGACGAATTAAAGAAGTTCTTGGACGAAGAATTACAGCGTCGAGTCGAAAGTTTCTATGCCGATTATAACGTAATTTTTCTTTCTTTTTTTCATTTTATTATAAATTAAAATATATAATAATAATAATAATAATAATAATAATAATAATAATAATGTGGATATTAATTTGAATTTCAGAAAATGGAGGAAAAACCATTTGTCACTGAAAAAGGCTATGGGGAAGAAGCAGTGATCAAAGAGCTGCATGATCCTATGAGAAAGAACGTTAACCACTTCTTGAAGATTGAA

mRNA sequence

ATGGCAGAGAGAATCGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCTTTGGAGGCTTCGTGGAAAAAAAGTCGATTGTTTGAAGAAGATGAGAATAAATTGTTGACGGGTTGGGAAGATGATATTGCAGATGTTGCTAAGAAGATCGTCGAGGAGCAAAGCCCAAAACAGCTGTATATTGTTCGTGGAAAGCTAAAAAAGCTTATTGAATACGATGTCTCCCCCAATTTCATTTTTAAGACTCTAGTAGACGAATTAAAGAAGTTCTTGGACGAAGAATTACAGCGTCGAGTCGAAAGTTTCTATGCCGATTATAACAAAATGGAGGAAAAACCATTTGTCACTGAAAAAGGCTATGGGGAAGAAGCAGTGATCAAAGAGCTGCATGATCCTATGAGAAAGAACGTTAACCACTTCTTGAAGATTGAA

Coding sequence (CDS)

ATGGCAGAGAGAATCGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCTTTGGAGGCTTCGTGGAAAAAAAGTCGATTGTTTGAAGAAGATGAGAATAAATTGTTGACGGGTTGGGAAGATGATATTGCAGATGTTGCTAAGAAGATCGTCGAGGAGCAAAGCCCAAAACAGCTGTATATTGTTCGTGGAAAGCTAAAAAAGCTTATTGAATACGATGTCTCCCCCAATTTCATTTTTAAGACTCTAGTAGACGAATTAAAGAAGTTCTTGGACGAAGAATTACAGCGTCGAGTCGAAAGTTTCTATGCCGATTATAACAAAATGGAGGAAAAACCATTTGTCACTGAAAAAGGCTATGGGGAAGAAGCAGTGATCAAAGAGCTGCATGATCCTATGAGAAAGAACGTTAACCACTTCTTGAAGATTGAA

Protein sequence

MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGYGEEAVIKELHDPMRKNVNHFLKIE
Homology
[Close]
BLAST of Cp4.1LG08g02270 vs. Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +A  +A  S  NLR A+  LE+   K   F+  E  LL  WE+ I+ + K   EEQSP +
Sbjct: 211 LAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTELPLLD-WENYISQIVKDCFEEQSPAR 270

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRV---ESFYADYNKMEEKP 116
           L IVRGKL +L+ + + P  IFKTL+ E+ K LD  ++  +    S+Y   +++  KP
Sbjct: 271 LSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHWASYYEHRSQIGSKP 327

[Close]
BLAST of Cp4.1LG08g02270 vs. Swiss-Prot
Match: RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-10
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1 

Query: 2   AERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQL 61
           A RIA+ S  +LR+AI SLE    ++  F  ++      WE+ +A++A  +++EQSPK+L
Sbjct: 214 AARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMKEQSPKKL 273

Query: 62  YIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADY 109
           + VRGK+ +L+   + P  I K L+ EL K LD EL+  V  + A Y
Sbjct: 274 FQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHWAAYY 320

[Close]
BLAST of Cp4.1LG08g02270 vs. Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +A R+A+ S  NLR+A+   EA   +   F ED+    T WE  + + A  IV +Q+P++
Sbjct: 211 LARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQR 270

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADY 109
           L  VRG+L +L+ + + P  I K L+ EL    D +L+  V    A Y
Sbjct: 271 LLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYY 318

[Close]
BLAST of Cp4.1LG08g02270 vs. Swiss-Prot
Match: RFC5_ORYSJ (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica GN=RFC5 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1 

Query: 2   AERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQL 61
           A RIA  S  NLR+AI   E    +   F  ++      WE  ++++A  I++EQSPK+L
Sbjct: 214 AARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQYVSEIAADIMKEQSPKRL 273

Query: 62  YIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADY 109
           + VR K  +L+   + P  I K L+ EL K LD +L+  +  + A Y
Sbjct: 274 FAVRQKFYELLVNCIPPESILKKLLAELLKKLDSDLKHEICHWAAHY 320

[Close]
BLAST of Cp4.1LG08g02270 vs. Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 9.0e-08
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +A R+A+ S  NLR+A+   EA   +   F  D+    T WE  + + A  IV +Q+P++
Sbjct: 211 LAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQR 270

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADY 109
           L  VRG+L +L+ + + P  I K L+ EL    D +L+  V    A Y
Sbjct: 271 LLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYY 318

[Close]
BLAST of Cp4.1LG08g02270 vs. TrEMBL
Match: M5XSE1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025123mg PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-35
Identity = 82/146 (56.16%), Postives = 110/146 (75.34%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AER A+NSKNN   AIRS EA+WKK   F+E++  +LTGWED+IAD+AK ++EEQSPKQ
Sbjct: 457 LAERFAENSKNNFCLAIRSFEATWKKCYPFKENQ-VILTGWEDNIADIAKNMIEEQSPKQ 516

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEK 120
           LYI+RGKL+ LI + V P FIF++LV ELKK LD+ LQ R+ES Y +YN+ +E  F ++K
Sbjct: 517 LYIIRGKLQNLIVHGVCPEFIFQSLVAELKKHLDDSLQDRIESMYDEYNRNDENMFESDK 576

Query: 121 GYGEEAVIKELHDPMRKNVNHFLKIE 147
            Y  E + K L+D  RK++  FL+IE
Sbjct: 577 -YDHEEMSKRLNDHSRKSIKQFLRIE 600

[Close]
BLAST of Cp4.1LG08g02270 vs. TrEMBL
Match: B9IB37_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17680g PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-35
Identity = 87/154 (56.49%), Postives = 113/154 (73.38%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AE+IAD SKNNLRQAIRS EASW  S  F ED+ ++LTGWEDDIA++AK +VEEQSPKQ
Sbjct: 533 LAEKIADKSKNNLRQAIRSFEASWHGSYPFTEDQ-EILTGWEDDIANIAKDMVEEQSPKQ 592

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNK-------MEE 120
           LYI+RGKL+ LIE+DVSP+F F++L+ ELKK LDE  Q +++  + DYN+       + E
Sbjct: 593 LYIIRGKLQNLIEHDVSPDFFFESLLGELKKHLDEPFQLQLDGLHKDYNRNDGNMLEISE 652

Query: 121 KPFVTEKGYGEEAVIKELHDPMRKNVNH-FLKIE 147
              +  +   EEA  K LHDP RKN +H F++IE
Sbjct: 653 NELIFLRSRHEEAG-KRLHDPARKNADHLFVRIE 684

[Close]
BLAST of Cp4.1LG08g02270 vs. TrEMBL
Match: A0A061GE61_THECC (ATPase family associated with various cellular activities, putative isoform 1 OS=Theobroma cacao GN=TCM_016678 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 83/146 (56.85%), Postives = 113/146 (77.40%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AE++A++SKNNLRQAIRS EA W  S  F+ED+  +LTGWEDDIA++AK IVEE+SPKQ
Sbjct: 472 LAEKMAESSKNNLRQAIRSFEACWHSSYPFKEDQ-VILTGWEDDIANIAKNIVEERSPKQ 531

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEK 120
           LYI+RGKL+ LIE+DVSP+FIFK+LV+E+KK + E L  +V+  Y +YN+ +E    +E 
Sbjct: 532 LYIIRGKLQILIEHDVSPDFIFKSLVEEVKKHMHENLHTQVDGLYDEYNRDDESMIESE- 591

Query: 121 GYGEEAVIKELHDPMRKNVNHFLKIE 147
              +E  IK +H P+RKN+  FL+IE
Sbjct: 592 ---DEMSIKVIH-PVRKNMRIFLRIE 611

[Close]
BLAST of Cp4.1LG08g02270 vs. TrEMBL
Match: V4TEJ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024044mg PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.1e-34
Identity = 89/153 (58.17%), Postives = 112/153 (73.20%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AE+IADNSKNNLRQAIRS EAS + +  F E +  +LTGWEDDI ++A KI+EEQSPKQ
Sbjct: 561 LAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQ-VILTGWEDDITNIATKIIEEQSPKQ 620

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYN------KMEEK 120
           LYI+RGKL+ LIE+DV  +FIFK+LV+ELKK LD  L R++E  Y +YN         EK
Sbjct: 621 LYIIRGKLQNLIEHDVCLHFIFKSLVEELKKHLDAGLHRQLEGLYDEYNIDSGGRFDNEK 680

Query: 121 PFVTEKGYGEEAVIKELHDPMR-KNVNHFLKIE 147
           PFV  +   EE + K L+DP R KN+ HFL+IE
Sbjct: 681 PFVLGRTRNEE-MGKRLNDPTRNKNIQHFLRIE 711

[Close]
BLAST of Cp4.1LG08g02270 vs. TrEMBL
Match: B9T608_RICCO (Replication factor C subunit, putative OS=Ricinus communis GN=RCOM_0160810 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.4e-33
Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = 1 

Query: 2   AERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQL 61
           AERIA  SKNNLRQAIRSLEASW++S  F ED+ ++LTGWEDDIA++AK +++EQSPKQL
Sbjct: 508 AERIALESKNNLRQAIRSLEASWRRSYPFAEDQ-EILTGWEDDIANIAKNMIQEQSPKQL 567

Query: 62  YIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKME 113
           YI+RGKL+KLIE+DVSP FIF TL+DELKK LDE  Q +++  Y DYN+ +
Sbjct: 568 YIIRGKLQKLIEHDVSPEFIFNTLLDELKKHLDEFCQGQLDLLYKDYNRKD 617

[Close]
BLAST of Cp4.1LG08g02270 vs. TAIR10
Match: AT5G27740.1 (AT5G27740.1 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1 

Query: 2   AERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQL 61
           A RIA+ S  +LR+AI SLE    ++  F  ++      WE+ +A++A  +++EQSPK+L
Sbjct: 214 AARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMKEQSPKKL 273

Query: 62  YIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADY 109
           + VRGK+ +L+   + P  I K L+ EL K LD EL+  V  + A Y
Sbjct: 274 FQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHWAAYY 320

[Close]
BLAST of Cp4.1LG08g02270 vs. NCBI nr
Match: gi|778677576|ref|XP_011650816.1| (PREDICTED: replication factor C subunit 3-like [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.9e-66
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AERIADNS+NNLRQAIRSLEASWKKS+LF+EDENKLLTGWEDDIADVAKKIVEEQSPKQ
Sbjct: 449 LAERIADNSRNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDDIADVAKKIVEEQSPKQ 508

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEK 120
           LYIVRGKLKKLIEYDVSPNFIF+TLVDELKKFLDEELQRRVE FYADYNK+EEK FV+EK
Sbjct: 509 LYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYNKLEEKVFVSEK 568

Query: 121 GYGEEAVIKELHDPMRKNVNHFLKIE 147
           G GEEAVIK  HD +RKNVNHFLKIE
Sbjct: 569 GSGEEAVIKGQHDSIRKNVNHFLKIE 594

[Close]
BLAST of Cp4.1LG08g02270 vs. NCBI nr
Match: gi|659075589|ref|XP_008438224.1| (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 256.1 bits (653), Expect = 3.6e-65
Identity = 129/146 (88.36%), Postives = 139/146 (95.21%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AERIADNSKNNLRQAIRSLEASWKKS+LF+EDENKLLTGWEDDIADVAKKIVEEQSPKQ
Sbjct: 452 LAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDDIADVAKKIVEEQSPKQ 511

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEK 120
           LYIVRGKLKKLIEYDVSPNFIF+TLVDELKKFLDEELQRRVE FYADY K+EEK FV+E+
Sbjct: 512 LYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSER 571

Query: 121 GYGEEAVIKELHDPMRKNVNHFLKIE 147
           G GEE V+K  +DP+RKNVNHFLKIE
Sbjct: 572 GSGEETVVKGQNDPVRKNVNHFLKIE 597

[Close]
BLAST of Cp4.1LG08g02270 vs. NCBI nr
Match: gi|1000938699|ref|XP_015583545.1| (PREDICTED: replication factor C subunit 5 [Ricinus communis])

HSP 1 Score: 159.8 bits (403), Expect = 3.5e-36
Identity = 86/150 (57.33%), Postives = 108/150 (72.00%), Query Frame = 1 

Query: 2   AERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQL 61
           AERIA  SKNNLRQAIRSLEASW++S  F ED+ ++LTGWEDDIA++AK +++EQSPKQL
Sbjct: 508 AERIALESKNNLRQAIRSLEASWRRSYPFAEDQ-EILTGWEDDIANIAKNMIQEQSPKQL 567

Query: 62  YIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKG 121
           YI+RGKL+KLIE+DVSP FIF TL+DELKK LDE  Q +++  Y DYN+ +      E  
Sbjct: 568 YIIRGKLQKLIEHDVSPEFIFNTLLDELKKHLDEFCQGQLDLLYKDYNRKDGNMLEAENQ 627

Query: 122 Y-----GEEAVIKELHDPMRKNVNHFLKIE 147
                   E   K  HDP +K  + F+KIE
Sbjct: 628 LRFPHSRHEEAGKRFHDPAKKKFHQFMKIE 656

[Close]
BLAST of Cp4.1LG08g02270 vs. NCBI nr
Match: gi|694365010|ref|XP_009361456.1| (PREDICTED: replication factor C subunit 3-like [Pyrus x bretschneideri])

HSP 1 Score: 158.3 bits (399), Expect = 1.0e-35
Identity = 85/151 (56.29%), Postives = 110/151 (72.85%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AER A NS N+LRQAIRS EA+WKKS  F+ED+  +LTGWED+IAD+AK ++EEQSPKQ
Sbjct: 478 LAERFAQNSSNSLRQAIRSFEATWKKSYPFKEDQ-VILTGWEDNIADIAKNMIEEQSPKQ 537

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEK 120
           LYIVRGKL+ LI + V P FIFK+LV +LKK++D+ LQ RVES Y +YN+ +E  F + K
Sbjct: 538 LYIVRGKLQNLIVHSVCPEFIFKSLVAQLKKYVDDSLQDRVESMYDEYNRNDENMFESGK 597

Query: 121 G-----YGEEAVIKELHDPMRKNVNHFLKIE 147
                 +  E   K L D  RK++  FL+IE
Sbjct: 598 ALAPGRHDHEETGKRLTDQSRKHIQQFLRIE 627

[Close]
BLAST of Cp4.1LG08g02270 vs. NCBI nr
Match: gi|224129392|ref|XP_002320575.1| (hypothetical protein POPTR_0014s17680g [Populus trichocarpa])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-35
Identity = 87/154 (56.49%), Postives = 113/154 (73.38%), Query Frame = 1 

Query: 1   MAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQ 60
           +AE+IAD SKNNLRQAIRS EASW  S  F ED+ ++LTGWEDDIA++AK +VEEQSPKQ
Sbjct: 533 LAEKIADKSKNNLRQAIRSFEASWHGSYPFTEDQ-EILTGWEDDIANIAKDMVEEQSPKQ 592

Query: 61  LYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNK-------MEE 120
           LYI+RGKL+ LIE+DVSP+F F++L+ ELKK LDE  Q +++  + DYN+       + E
Sbjct: 593 LYIIRGKLQNLIEHDVSPDFFFESLLGELKKHLDEPFQLQLDGLHKDYNRNDGNMLEISE 652

Query: 121 KPFVTEKGYGEEAVIKELHDPMRKNVNH-FLKIE 147
              +  +   EEA  K LHDP RKN +H F++IE
Sbjct: 653 NELIFLRSRHEEAG-KRLHDPARKNADHLFVRIE 684

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g02270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RFC3_DICDI1.5e-1038.14Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3... [more]
RFC3_ARATH3.3e-1039.25Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1[more]
RFC3_MOUSE1.8e-0835.19Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=1 SV=1[more]
RFC5_ORYSJ4.0e-0835.51Replication factor C subunit 5 OS=Oryza sativa subsp. japonica GN=RFC5 PE=2 SV=1[more]
RFC3_HUMAN9.0e-0834.26Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2[more]
BLAST of Cp4.1LG08g02270 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XSE1_PRUPE2.1e-3556.16Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025123mg PE=4 S... [more]
B9IB37_POPTR2.1e-3556.49Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17680g PE=4 SV=1[more]
A0A061GE61_THECC1.0e-3456.85ATPase family associated with various cellular activities, putative isoform 1 OS... [more]
V4TEJ0_9ROSI5.1e-3458.17Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024044mg PE=4 SV=1[more]
B9T608_RICCO7.4e-3367.57Replication factor C subunit, putative OS=Ricinus communis GN=RCOM_0160810 PE=4 ... [more]
BLAST of Cp4.1LG08g02270 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27740.11.9e-1139.25 ATPase family associated with various cellular activities (AAA) [more]
BLAST of Cp4.1LG08g02270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677576|ref|XP_011650816.1|1.9e-6690.41PREDICTED: replication factor C subunit 3-like [Cucumis sativus][more]
gi|659075589|ref|XP_008438224.1|3.6e-6588.36PREDICTED: replication factor C subunit 3-like [Cucumis melo][more]
gi|1000938699|ref|XP_015583545.1|3.5e-3657.33PREDICTED: replication factor C subunit 5 [Ricinus communis][more]
gi|694365010|ref|XP_009361456.1|1.0e-3556.29PREDICTED: replication factor C subunit 3-like [Pyrus x bretschneideri][more]
gi|224129392|ref|XP_002320575.1|3.0e-3556.49hypothetical protein POPTR_0014s17680g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
cellular_component GO:0005575 cellular_component
cellular_component GO:0009379 Holliday junction helicase complex
cellular_component GO:0005657 replication fork
molecular_function GO:0003677 DNA binding
molecular_function GO:0009378 four-way junction helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g02270.1Cp4.1LG08g02270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalunknownSSF48019post-AAA+ oligomerization domain-likecoord: 40..108
score: 1.4
NoneNo IPR availableunknownCoilCoilcoord: 94..114
scor
NoneNo IPR availableGENE3DG3DSA:1.10.8.60coord: 2..36
score: 6.
NoneNo IPR availableGENE3DG3DSA:1.20.272.10coord: 41..110
score: 4.6
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 1..146
score: 1.5
NoneNo IPR availablePANTHERPTHR11669:SF13SUBFAMILY NOT NAMEDcoord: 1..146
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g02270Cucsa.257260Cucumber (Gy14) v1cgycpeB0687
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g02270Cucurbita maxima (Rimu)cmacpeB021
Cp4.1LG08g02270Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g02270Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g02270Cucurbita maxima (Rimu)cmacpeB854
Cp4.1LG08g02270Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g02270Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g02270Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g02270Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g02270Wild cucumber (PI 183967)cpecpiB879
Cp4.1LG08g02270Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g02270Cucumber (Chinese Long) v2cpecuB877
Cp4.1LG08g02270Bottle gourd (USVL1VR-Ls)cpelsiB696
Cp4.1LG08g02270Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g02270Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g02270Watermelon (Charleston Gray)cpewcgB790
Cp4.1LG08g02270Watermelon (97103) v1cpewmB845
Cp4.1LG08g02270Watermelon (97103) v1cpewmB854
Cp4.1LG08g02270Melon (DHL92) v3.5.1cpemeB791
Cp4.1LG08g02270Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g02270Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g02270Cucumber (Gy14) v2cgybcpeB889
Cp4.1LG08g02270Melon (DHL92) v3.6.1cpemedB932
Cp4.1LG08g02270Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g02270Silver-seed gourdcarcpeB0329
Cp4.1LG08g02270Silver-seed gourdcarcpeB0885
Cp4.1LG08g02270Silver-seed gourdcarcpeB1333
Cp4.1LG08g02270Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g02270Cucumber (Chinese Long) v3cpecucB1077
Cp4.1LG08g02270Wax gourdcpewgoB1097
Cp4.1LG08g02270Wax gourdcpewgoB1111
Cp4.1LG08g02270Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g02270Cucurbita pepo (Zucchini)cpecpeB344
Cp4.1LG08g02270Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g02270Cucumber (Gy14) v1cgycpeB0969