Cp4.1LG08g01290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g01290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlycoside hydrolase family 28 protein/polygalacturonase family protein
LocationCp4.1LG08 : 3525231 .. 3525881 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACTCACACCTTCCCCAAAAAAGCTCAGTTTCTCTCTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATGTAAGAAAAGCAAGAACCTTCTCCAATGGCTTCCTTCATTATCCTCTCTTCAAAAAAGCTTCCATTTTTAATGCCTTTTAGCTTCAAATCCACCGACCCATTTCCCATTTTTGCATTTTGAATAAATTCTTGCAACCTTTTTTTAAATTTTTTATAATTTTTTTGGAGTTTTGAATAAATTTAAAATGCTGTTCTTGTTCTCACAGCCGGTGAAAATGACGTTTTTGGTACTTGTTTTGGCGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGTGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATAAGTTGCAGAGCTCACACTGCTTCAATAACGGACTTCGGCGGCGTTGGCGACGGCGAGACGTCGAATACGAAGGCGTTTAAGGCGGCGGTGGAGCGGCTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACCGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCTGTTCTTCTCGCTTCTCAGGTAGAAATAA

mRNA sequence

CACACTCACACCTTCCCCAAAAAAGCTCAGTTTCTCTCTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATCCGGTGAAAATGACGTTTTTGGTACTTGTTTTGGCGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGTGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATAAGTTGCAGAGCTCACACTGCTTCAATAACGGACTTCGGCGGCGTTGGCGACGGCGAGACGTCGAATACGAAGGCGTTTAAGGCGGCGGTGGAGCGGCTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACCGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCTGTTCTTCTCGCTTCTCAGAAATAA

Coding sequence (CDS)

CACACTCACACCTTCCCCAAAAAAGCTCAGTTTCTCTCTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATCCGGTGAAAATGACGTTTTTGGTACTTGTTTTGGCGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGTGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATAAGTTGCAGAGCTCACACTGCTTCAATAACGGACTTCGGCGGCGTTGGCGACGGCGAGACGTCGAATACGAAGGCGTTTAAGGCGGCGGTGGAGCGGCTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACCGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCTGTTCTTCTCGCTTCTCAGAAATAA

Protein sequence

HTHTFPKKAQFLSEIMPMEELCKNPIKAHPVKMTFLVLVLAAAAAALMGEVEGRKVRILEDNGIEYGAISCRAHTASITDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQK
Homology
[Close]
BLAST of Cp4.1LG08g01290 vs. Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-33
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 1 

Query: 36  LVLVLAAAAAAL-MGEVEGRKVRILEDNGIEYGAISCRAHTASITDFGGVGDGETSNTKA 95
           +V VL A    L +   E RK RILE   +EY AISCRAH+AS+ DFGGVGDG+T NTKA
Sbjct: 24  VVSVLVAVVLLLSVSRGECRKGRILE--ALEYSAISCRAHSASLVDFGGVGDGQTLNTKA 83

Query: 96  FKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 146
           F+ AV  LS+Y  +GGAQLYVPAG+WLTGSF+LTSHFTLFLH+DAVLLASQ
Sbjct: 84  FQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQ 132

[Close]
BLAST of Cp4.1LG08g01290 vs. TrEMBL
Match: A0A0A0L8V4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121720 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-47
Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = 1 

Query: 16  MPMEELCKNPIKAHPVKMTFLVLVLAAAAAALMGEVEGRK--------VRILEDNGIEYG 75
           MPME+L KNPIKA  +KM  L +++AAA   LM EVEGRK         +ILE NGIEYG
Sbjct: 1   MPMEKLYKNPIKAQVMKMVILGVIVAAA---LMDEVEGRKGKVKKGKKAKILEGNGIEYG 60

Query: 76  AISCRAHTASITDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNL 135
           AISCRAHTASIT+FGGVGDG TSNTKAF+AAVE+LSQY  DGGAQLYVPAG+WLTGSFNL
Sbjct: 61  AISCRAHTASITEFGGVGDGVTSNTKAFQAAVEQLSQYTDDGGAQLYVPAGKWLTGSFNL 120

Query: 136 TSHFTLFLHQDAVLLASQ 146
           TSHFTLFLHQDAVLLASQ
Sbjct: 121 TSHFTLFLHQDAVLLASQ 135

[Close]
BLAST of Cp4.1LG08g01290 vs. TrEMBL
Match: K4C131_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-37
Identity = 85/127 (66.93%), Postives = 102/127 (80.31%), Query Frame = 1 

Query: 23  KNPIKAHPVKMTFL-VLVLAAAAAALMGEVEGRKVRILEDNG---IEYGAISCRAHTASI 82
           K P+ +   K ++L V+VL     +L+G  EGRK RIL+++    +EY AISCRAH+ASI
Sbjct: 3   KIPLSSQMEKTSWLLVVVLGMVVISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASI 62

Query: 83  TDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQD 142
           TDFGGVGDG+T NTKAF+ AV RLSQYA DGGAQL VPAG+WLTGSFNLTSHFTLFLH+D
Sbjct: 63  TDFGGVGDGKTLNTKAFQEAVNRLSQYASDGGAQLIVPAGQWLTGSFNLTSHFTLFLHKD 122

Query: 143 AVLLASQ 146
           A+LLASQ
Sbjct: 123 AILLASQ 129

[Close]
BLAST of Cp4.1LG08g01290 vs. TrEMBL
Match: M1BYH4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-35
Identity = 78/113 (69.03%), Postives = 95/113 (84.07%), Query Frame = 1 

Query: 36  LVLVLAAAAAALMGEVEGRKVRILEDNG---IEYGAISCRAHTASITDFGGVGDGETSNT 95
           LV+++     +L+G  EGRK RIL+++    +EY AISCRAH+ASITDFGGVGDG+T NT
Sbjct: 8   LVVLVGVVLISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASITDFGGVGDGKTLNT 67

Query: 96  KAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 146
           KAF+ AV +LS+YA DGG+QL VPAG+WLTGSFNLTSHFTLFLH+DAVLLASQ
Sbjct: 68  KAFQEAVNQLSKYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLHKDAVLLASQ 120

[Close]
BLAST of Cp4.1LG08g01290 vs. TrEMBL
Match: M1BYH5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-35
Identity = 78/113 (69.03%), Postives = 95/113 (84.07%), Query Frame = 1 

Query: 36  LVLVLAAAAAALMGEVEGRKVRILEDNG---IEYGAISCRAHTASITDFGGVGDGETSNT 95
           LV+++     +L+G  EGRK RIL+++    +EY AISCRAH+ASITDFGGVGDG+T NT
Sbjct: 8   LVVLVGVVLISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASITDFGGVGDGKTLNT 67

Query: 96  KAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 146
           KAF+ AV +LS+YA DGG+QL VPAG+WLTGSFNLTSHFTLFLH+DAVLLASQ
Sbjct: 68  KAFQEAVNQLSKYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLHKDAVLLASQ 120

[Close]
BLAST of Cp4.1LG08g01290 vs. TrEMBL
Match: A0A124SAZ8_CYNCS (Glycoside hydrolase, family 28 OS=Cynara cardunculus var. scolymus GN=Ccrd_008943 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-35
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1 

Query: 30  PVKMTFLVLVLAAAAAALMGEVEGRKVRILEDNGIEYGAISCRAHTASITDFGGVGDGET 89
           P++    + V+     A MG VEGRKV+ LE + +EY AI+CR H+ASITDFGGVGDG+T
Sbjct: 29  PMREMIWLFVVVLLGVASMGGVEGRKVKALEGS-LEYTAINCRGHSASITDFGGVGDGKT 88

Query: 90  SNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 146
            NT+AF+ AV +LSQY  DGGAQLYVPAG+WLTGSFNLTSHFTLFLH+DA LLASQ
Sbjct: 89  LNTRAFQEAVNKLSQYGSDGGAQLYVPAGQWLTGSFNLTSHFTLFLHKDATLLASQ 143

[Close]
BLAST of Cp4.1LG08g01290 vs. TAIR10
Match: AT3G61490.1 (AT3G61490.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 61/81 (75.31%), Postives = 76/81 (93.83%), Query Frame = 1 

Query: 65  EYGAISCRAHTASITDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGS 124
           EY AI CR+H+ASIT++GGVGDG+T NTKAF++AV+ LSQY+ +GGAQL+VPAG+WLTGS
Sbjct: 34  EYTAIICRSHSASITEYGGVGDGKTLNTKAFQSAVDHLSQYSSEGGAQLFVPAGKWLTGS 93

Query: 125 FNLTSHFTLFLHQDAVLLASQ 146
           FNLTSHFTLFLH+DA+LLA+Q
Sbjct: 94  FNLTSHFTLFLHKDAILLAAQ 114

[Close]
BLAST of Cp4.1LG08g01290 vs. TAIR10
Match: AT2G23900.1 (AT2G23900.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29
Identity = 65/126 (51.59%), Postives = 86/126 (68.25%), Query Frame = 1 

Query: 20  ELCKNPIKAHPVKMTFLVLVLAAAAAALMGEVEGRKVRILEDNGIEYGAISCRAHTASIT 79
           E   NP     ++ +F +LV+ A ++  M  +E R +       IEY A++CR HTA +T
Sbjct: 2   EFSINPSTLKMIRTSFCILVVLAISSFSM--MEARDLASKGKTNIEYMALNCRKHTAVLT 61

Query: 80  DFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDA 139
           +FG VGDG+TSNTKAFK A+ +L+  A DGG QL VP G+WLTGSFNLTSHFTLF+ + A
Sbjct: 62  EFGAVGDGKTSNTKAFKEAITKLAPKAADGGVQLIVPPGKWLTGSFNLTSHFTLFIQKGA 121

Query: 140 VLLASQ 146
            +LASQ
Sbjct: 122 TILASQ 125

[Close]
BLAST of Cp4.1LG08g01290 vs. TAIR10
Match: AT3G48950.1 (AT3G48950.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-29
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 1 

Query: 31  VKMTFLVLVLAAAAAALMGEVEGRKVRILEDNGIEYGAISCRAHTASITDFGGVGDGETS 90
           ++ TF +LV  A    L   +E R  R    + IE+ A++CR H+A +TDFG VGDG+TS
Sbjct: 2   IRPTFGLLVFLAIF--LFPAIESRSHRNSVTSKIEFSALNCRKHSAILTDFGAVGDGKTS 61

Query: 91  NTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 146
           NTKAF+ A+ +LSQ A DGGAQL VP G+WLTGSFNLTSHFTLF+ + A +LASQ
Sbjct: 62  NTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLTSHFTLFIQRGATILASQ 114

[Close]
BLAST of Cp4.1LG08g01290 vs. TAIR10
Match: AT4G23500.1 (AT4G23500.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 7.5e-29
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 65  EYGAISCRAHTASITDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGS 124
           EY AISCRA++AS+ +FG VGDG TSNT AF+ AV +LS++A  GG+ L+VPAGRWLTG+
Sbjct: 57  EYSAISCRAYSASLDEFGAVGDGVTSNTAAFRDAVSQLSRFADYGGSLLFVPAGRWLTGN 116

Query: 125 FNLTSHFTLFLHQDAVLLASQK 147
           FNLTSHFTLFLH+DAV+LASQ+
Sbjct: 117 FNLTSHFTLFLHRDAVILASQE 138

[Close]
BLAST of Cp4.1LG08g01290 vs. TAIR10
Match: AT5G49215.1 (AT5G49215.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 104.8 bits (260), Expect = 4.7e-23
Identity = 61/116 (52.59%), Postives = 75/116 (64.66%), Query Frame = 1 

Query: 30  PVKMTFLVLVLAAAAAALMGEVEGRKVRILEDNGIEYGAISCRAHTASITDFGGVGDGET 89
           PV +  ++L+  ++   + G   G  V  + D G      S R H+  ITDFG VGDG+T
Sbjct: 2   PVSVALVLLLTLSSVILINGRSYG--VGNICDRGRRP---SERPHSVKITDFGAVGDGKT 61

Query: 90  SNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 146
            NT AF+ AV  L  +A  GGAQLYVP GRWLTGSFNLTSH TLFL +DAV+LASQ
Sbjct: 62  LNTLAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQ 112

[Close]
BLAST of Cp4.1LG08g01290 vs. NCBI nr
Match: gi|659075180|ref|XP_008438007.1| (PREDICTED: probable polygalacturonase [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 3.1e-48
Identity = 106/138 (76.81%), Postives = 115/138 (83.33%), Query Frame = 1 

Query: 16  MPMEELCKNPIKAHPVKMTFLVLVLAAAAAALMGEVEGR--------KVRILEDNGIEYG 75
           MPME+L KNPIKA  +KM  L +++AAA   LM EVEGR        K +ILE NGIEYG
Sbjct: 1   MPMEKLYKNPIKAQVMKMVILGVIMAAA---LMDEVEGRRGKVKKGKKAKILEGNGIEYG 60

Query: 76  AISCRAHTASITDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNL 135
           AI+CRAHTASIT+FGGVGDG TSNTKAF+AAVERL QYA DGGAQLYVPAGRWLTGSFNL
Sbjct: 61  AINCRAHTASITEFGGVGDGVTSNTKAFQAAVERLGQYANDGGAQLYVPAGRWLTGSFNL 120

Query: 136 TSHFTLFLHQDAVLLASQ 146
           TSHFTLFLHQDAVLLASQ
Sbjct: 121 TSHFTLFLHQDAVLLASQ 135

[Close]
BLAST of Cp4.1LG08g01290 vs. NCBI nr
Match: gi|449432134|ref|XP_004133855.1| (PREDICTED: probable polygalacturonase [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = 1 

Query: 16  MPMEELCKNPIKAHPVKMTFLVLVLAAAAAALMGEVEGRK--------VRILEDNGIEYG 75
           MPME+L KNPIKA  +KM  L +++AAA   LM EVEGRK         +ILE NGIEYG
Sbjct: 1   MPMEKLYKNPIKAQVMKMVILGVIVAAA---LMDEVEGRKGKVKKGKKAKILEGNGIEYG 60

Query: 76  AISCRAHTASITDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNL 135
           AISCRAHTASIT+FGGVGDG TSNTKAF+AAVE+LSQY  DGGAQLYVPAG+WLTGSFNL
Sbjct: 61  AISCRAHTASITEFGGVGDGVTSNTKAFQAAVEQLSQYTDDGGAQLYVPAGKWLTGSFNL 120

Query: 136 TSHFTLFLHQDAVLLASQ 146
           TSHFTLFLHQDAVLLASQ
Sbjct: 121 TSHFTLFLHQDAVLLASQ 135

[Close]
BLAST of Cp4.1LG08g01290 vs. NCBI nr
Match: gi|970029736|ref|XP_015076181.1| (PREDICTED: probable polygalacturonase [Solanum pennellii])

HSP 1 Score: 165.6 bits (418), Expect = 6.4e-38
Identity = 83/126 (65.87%), Postives = 102/126 (80.95%), Query Frame = 1 

Query: 23  KNPIKAHPVKMTFLVLVLAAAAAALMGEVEGRKVRILEDNG---IEYGAISCRAHTASIT 82
           K P+ +   K ++L++V+     +L+G  EGRK RIL+++    +EY AISCRAH+ASIT
Sbjct: 3   KIPLSSQMEKTSWLLVVVLGVVISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASIT 62

Query: 83  DFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDA 142
           DFGGVGDG+T NTKAF+ AV RLSQYA DGGAQL VPAG+WLTGSFNLTSHFTLFLH+DA
Sbjct: 63  DFGGVGDGKTLNTKAFQEAVNRLSQYASDGGAQLIVPAGQWLTGSFNLTSHFTLFLHKDA 122

Query: 143 VLLASQ 146
           +LLASQ
Sbjct: 123 ILLASQ 128

[Close]
BLAST of Cp4.1LG08g01290 vs. NCBI nr
Match: gi|460388891|ref|XP_004240097.1| (PREDICTED: probable polygalacturonase [Solanum lycopersicum])

HSP 1 Score: 163.3 bits (412), Expect = 3.2e-37
Identity = 85/127 (66.93%), Postives = 102/127 (80.31%), Query Frame = 1 

Query: 23  KNPIKAHPVKMTFL-VLVLAAAAAALMGEVEGRKVRILEDNG---IEYGAISCRAHTASI 82
           K P+ +   K ++L V+VL     +L+G  EGRK RIL+++    +EY AISCRAH+ASI
Sbjct: 3   KIPLSSQMEKTSWLLVVVLGMVVISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASI 62

Query: 83  TDFGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQD 142
           TDFGGVGDG+T NTKAF+ AV RLSQYA DGGAQL VPAG+WLTGSFNLTSHFTLFLH+D
Sbjct: 63  TDFGGVGDGKTLNTKAFQEAVNRLSQYASDGGAQLIVPAGQWLTGSFNLTSHFTLFLHKD 122

Query: 143 AVLLASQ 146
           A+LLASQ
Sbjct: 123 AILLASQ 129

[Close]
BLAST of Cp4.1LG08g01290 vs. NCBI nr
Match: gi|971547390|ref|XP_006345582.2| (PREDICTED: probable polygalacturonase isoform X1 [Solanum tuberosum])

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-35
Identity = 81/125 (64.80%), Postives = 101/125 (80.80%), Query Frame = 1 

Query: 25  PIKAHPVKMTFLVLVLAAAAA-ALMGEVEGRKVRILEDNG---IEYGAISCRAHTASITD 84
           P+ +   K ++L++VL      +L+G  EGRK RIL+++    +EY AISCRAH+ASITD
Sbjct: 5   PLSSQMEKTSWLLVVLVGVVLISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASITD 64

Query: 85  FGGVGDGETSNTKAFKAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAV 144
           FGGVGDG+T NTKAF+ AV +LS+YA DGG+QL VPAG+WLTGSFNLTSHFTLFLH+DAV
Sbjct: 65  FGGVGDGKTLNTKAFQEAVNQLSKYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLHKDAV 124

Query: 145 LLASQ 146
           LLASQ
Sbjct: 125 LLASQ 129

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g01290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_VITVI3.6e-3368.47Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1[more]
BLAST of Cp4.1LG08g01290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8V4_CUCSA1.1e-4776.09Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121720 PE=3 SV=1[more]
K4C131_SOLLC2.2e-3766.93Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
M1BYH4_SOLTU2.7e-3569.03Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=4 SV=1[more]
M1BYH5_SOLTU2.7e-3569.03Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=3 SV=1[more]
A0A124SAZ8_CYNCS2.7e-3567.24Glycoside hydrolase, family 28 OS=Cynara cardunculus var. scolymus GN=Ccrd_00894... [more]
BLAST of Cp4.1LG08g01290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61490.13.3e-3275.31 Pectin lyase-like superfamily protein[more]
AT2G23900.11.5e-2951.59 Pectin lyase-like superfamily protein[more]
AT3G48950.12.6e-2956.52 Pectin lyase-like superfamily protein[more]
AT4G23500.17.5e-2970.73 Pectin lyase-like superfamily protein[more]
AT5G49215.14.7e-2352.59 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG08g01290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075180|ref|XP_008438007.1|3.1e-4876.81PREDICTED: probable polygalacturonase [Cucumis melo][more]
gi|449432134|ref|XP_004133855.1|1.5e-4776.09PREDICTED: probable polygalacturonase [Cucumis sativus][more]
gi|970029736|ref|XP_015076181.1|6.4e-3865.87PREDICTED: probable polygalacturonase [Solanum pennellii][more]
gi|460388891|ref|XP_004240097.1|3.2e-3766.93PREDICTED: probable polygalacturonase [Solanum lycopersicum][more]
gi|971547390|ref|XP_006345582.2|1.7e-3564.80PREDICTED: probable polygalacturonase isoform X1 [Solanum tuberosum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g01290.1Cp4.1LG08g01290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 32..144
score: 6.28
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 36..145
score: 2.8
NoneNo IPR availablePANTHERPTHR31339FAMILY NOT NAMEDcoord: 64..145
score: 2.1
NoneNo IPR availablePANTHERPTHR31339:SF7POLYGALACTURONASE-RELATEDcoord: 64..145
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g01290MELO3C005839.2Melon (DHL92) v3.6.1cpemedB929
Cp4.1LG08g01290MELO3C006092.2Melon (DHL92) v3.6.1cpemedB950
Cp4.1LG08g01290CsaV3_3G008750Cucumber (Chinese Long) v3cpecucB1049
Cp4.1LG08g01290CsaV3_5G001070Cucumber (Chinese Long) v3cpecucB1071
Cp4.1LG08g01290CsGy3G008700Cucumber (Gy14) v2cgybcpeB447
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g01290Cucurbita pepo (Zucchini)cpecpeB254
Cp4.1LG08g01290Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g01290Cucurbita pepo (Zucchini)cpecpeB488
Cp4.1LG08g01290Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g01290Cucumber (Gy14) v1cgycpeB0688
Cp4.1LG08g01290Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g01290Cucurbita maxima (Rimu)cmacpeB298
Cp4.1LG08g01290Cucurbita maxima (Rimu)cmacpeB854
Cp4.1LG08g01290Cucurbita moschata (Rifu)cmocpeB261
Cp4.1LG08g01290Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g01290Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g01290Wild cucumber (PI 183967)cpecpiB854
Cp4.1LG08g01290Cucumber (Chinese Long) v2cpecuB852
Cp4.1LG08g01290Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g01290Bottle gourd (USVL1VR-Ls)cpelsiB719
Cp4.1LG08g01290Watermelon (Charleston Gray)cpewcgB786
Cp4.1LG08g01290Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g01290Watermelon (97103) v1cpewmB844
Cp4.1LG08g01290Watermelon (97103) v1cpewmB845
Cp4.1LG08g01290Melon (DHL92) v3.5.1cpemeB809
Cp4.1LG08g01290Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g01290Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g01290Silver-seed gourdcarcpeB0537
Cp4.1LG08g01290Silver-seed gourdcarcpeB0692
Cp4.1LG08g01290Silver-seed gourdcarcpeB0693
Cp4.1LG08g01290Wax gourdcpewgoB1106