Cp4.1LG08g01190 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g01190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG08 : 3655650 .. 3657215 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGGAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAGTACCTCAGTGCAGTTGCCGAGTAAATATCGGGTTAGGGTTTAAGAAAACGGTGACGTGCGGCGAATCGAGGAAATTTCCGGCGGCCGGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGTAACTTTTAGTGTTAAATTAATTGCTCAAATCATTTGTTTGTTTCAATTGATTCACTTTTTCGTGGTTCTTATGCTAATGTTTTTCCATGGGCGGATTGATTAGGGGAGAAACAAGAAAAAGAAAAGGCTGCGAAAAAGCTCCAAGCAAAGAAGAACAAGATGAAGGTATCGCTCTCTCTCTTAATCTCTGTATTGAATCGAGAAAAGTGGAATTTTCTGTTTTGCTGATTTAAAAAAGAAATTGAGAGTTATGGAGAGAGATGGATTATTGTCTCTGTTTTGATTTTTCACTTGGTAATTTGGAAATTTGCTCATACGAGTAATGTTCTAGTTTTCACACATTCTGATCACAAAACTCTCAAGAGATGCGTTCATTAGGATGAATAATGGAGAGAAAAGTATAATGGCTAGTGACTGTGAGGCCCCAGTAGACTGGAGAGGACACCAAAGGCCTCTGCTCTTCCATCTCTTGGATAGATAGAGAGGGAAGGCAGAACTTGTTTAGGTTTTTCCGGTGTCCGAGCTTGCCCCACAGATATATTAGAAATGATACCTTGGGGCGGAGCTAAAGCTAAGCGAAGGCCTCTACTCTTCCAACCCCTTGGATAGATGGAGTGGGAAGGCAGAACTTGTTTTGGTTTTTCCAGTTTTCGAGCTTGCCCCACAGATATATTAGAAATGATACCTTGGGGCGGAGCTAAAGCTAAGCAAATAGCTTCTGCTCCAATAATAGATCACTCTGCAGGTGGTAGTAAGAGATGTGAATCTGTCTTCCCACTGTGTGATTTTTTGAGCAATTGGCCAACTGTGGACGAATATCAAGTTTCGTTTGCCTTTTCTGAACATGTCCGTGTATATTAATACCATTTGAAAGTCTCATTGTTTTCGTTTAATTATGTGCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGATGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATATTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTTTCTCTTGATTTCTGATCTCTTGATTGCCTGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTATTCTTTTAAGTTGGATGTTTCAATCTTGAAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCCAGTTTCTCCTTATAGAAAAATCCATATTC

mRNA sequence

AGAGAGGAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAGTACCTCAGTGCAGTTGCCGAGTAAATATCGGGTTAGGGTTTAAGAAAACGGTGACGTGCGGCGAATCGAGGAAATTTCCGGCGGCCGGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAAGAAAAAGAAAAGGCTGCGAAAAAGCTCCAAGCAAAGAAGAACAAGATGAAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGATGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATATTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTTTCTCTTGATTTCTGATCTCTTGATTGCCTGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTATTCTTTTAAGTTGGATGTTTCAATCTTGAAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCCAGTTTCTCCTTATAGAAAAATCCATATTC

Coding sequence (CDS)

ATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAAGAAAAAGAAAAGGCTGCGAAAAAGCTCCAAGCAAAGAAGAACAAGATGAAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGA

Protein sequence

MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKKVKTKLTAAAKAKAAQAMELDK

Homology

[Close]

BLAST of Cp4.1LG08g01190 vs. TrEMBL
Match: A0A0A0L493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-25
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. TrEMBL
Match: A0A059CHY1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-23
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1   MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
           MSKKN+LSRRK Q+EFDLRREK EKEK  KKLQ KKNKMKVDGSGKKKKG  GFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTAAAKAKAAQAMELDK 82
           VKTKLTA AKAKAAQAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of Cp4.1LG08g01190 vs. TrEMBL
Match: I1JK99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-23
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNL++RK Q+EFDL+REKQEK K  +KL AKKNKMKVDGSGKKKKGG+GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTA AKAKAAQAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. TrEMBL
Match: A0A061E133_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005350 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-23
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGS-GKKKKGGAGFQVGKK 60
          MSKKNNL+RRK QHEFDL+REK EKEK AKKLQAKKNKMKVDGS  KKKKGG+GFQVGK+
Sbjct: 1  MSKKNNLARRKKQHEFDLQREKAEKEKQAKKLQAKKNKMKVDGSENKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKAAQAMELDK 82
          K+KTKLT  AKAKAAQAMELDK
Sbjct: 61 KLKTKLTEVAKAKAAQAMELDK 82

[Close]

BLAST of Cp4.1LG08g01190 vs. TrEMBL
Match: A0A0B0MSD3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31098 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGS-GKKKKGGAGFQVGKK 60
          MSKKNNLSRRK QHEFDL+RE++EKEK  KKLQAKKNKMKVDGS  KKKKGG+GFQVGK+
Sbjct: 1  MSKKNNLSRRKKQHEFDLQREREEKEKKVKKLQAKKNKMKVDGSEKKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKAAQAMELDK 82
          K+KTKLT  AKAKAAQAMELDK
Sbjct: 61 KLKTKLTEVAKAKAAQAMELDK 82

[Close]

BLAST of Cp4.1LG08g01190 vs. TAIR10
Match: AT2G45860.1 (AT2G45860.1 unknown protein)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-20
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNL++RK QHE++L++EK+ ++K  KKL A KNKMKVDGSGKKKKG  GF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKKG--GFSVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELD 81
          +KTKLT  AKAKAAQAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: gi|700201390|gb|KGN56523.1| (hypothetical protein Csa_3G122470 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-25
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: gi|629113098|gb|KCW78058.1| (hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-23
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1   MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
           MSKKN+LSRRK Q+EFDLRREK EKEK  KKLQ KKNKMKVDGSGKKKKG  GFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTAAAKAKAAQAMELDK 82
           VKTKLTA AKAKAAQAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: gi|702326796|ref|XP_010053693.1| (PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-23
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDLRREK EKEK  KKLQ KKNKMKVDGSGKKKKG  GFQVGK+K
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTA AKAKAAQAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: gi|571443846|ref|XP_006576335.1| (PREDICTED: uncharacterized protein LOC100782399 [Glycine max])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNL++RK Q+EFDL+REKQEK K  +KL AKKNKMKVDGSGKKKKGG+GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTA AKAKAAQAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: gi|590722203|ref|XP_007051831.1| (Uncharacterized protein TCM_005350 [Theobroma cacao])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGS-GKKKKGGAGFQVGKK 60
          MSKKNNL+RRK QHEFDL+REK EKEK AKKLQAKKNKMKVDGS  KKKKGG+GFQVGK+
Sbjct: 1  MSKKNNLARRKKQHEFDLQREKAEKEKQAKKLQAKKNKMKVDGSENKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKAAQAMELDK 82
          K+KTKLT  AKAKAAQAMELDK
Sbjct: 61 KLKTKLTEVAKAKAAQAMELDK 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g01190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g01190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L493_CUCSA	1.8e-25	90.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1	[more]
A0A059CHY1_EUCGR	2.2e-23	86.42	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 ...	[more]
I1JK99_SOYBN	8.5e-23	83.95	Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1	[more]
A0A061E133_THECC	8.5e-23	85.37	Uncharacterized protein OS=Theobroma cacao GN=TCM_005350 PE=4 SV=1	[more]
A0A0B0MSD3_GOSAR	1.9e-22	84.15	Uncharacterized protein OS=Gossypium arboreum GN=F383_31098 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g01190 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45860.1	1.6e-20	73.75	unknown protein	[more]

BLAST of Cp4.1LG08g01190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201390\|gb\|KGN56523.1\|	2.6e-25	90.12	hypothetical protein Csa_3G122470 [Cucumis sativus]	[more]
gi\|629113098\|gb\|KCW78058.1\|	3.2e-23	86.42	hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis]	[more]
gi\|702326796\|ref\|XP_010053693.1\|	3.2e-23	86.42	PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis]	[more]
gi\|571443846\|ref\|XP_006576335.1\|	1.2e-22	83.95	PREDICTED: uncharacterized protein LOC100782399 [Glycine max]	[more]
gi\|590722203\|ref\|XP_007051831.1\|	1.2e-22	85.37	Uncharacterized protein TCM_005350 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g01190.1	Cp4.1LG08g01190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 4..42 scor
None	No IPR available	PANTHER	PTHR36745	FAMILY NOT NAMED	coord: 2..81 score: 1.6
None	No IPR available	PANTHER	PTHR36745:SF1	SUBFAMILY NOT NAMED	coord: 2..81 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g01190	CsaV3_3G008990	Cucumber (Chinese Long) v3	cpecucB1049
Cp4.1LG08g01190	Carg24639	Silver-seed gourd	carcpeB0537

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g01190	Cucumber (Gy14) v2	cgybcpeB447
Cp4.1LG08g01190	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g01190	Melon (DHL92) v3.6.1	cpemedB929
Cp4.1LG08g01190	Melon (DHL92) v3.6.1	cpemedB950
Cp4.1LG08g01190	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g01190	Silver-seed gourd	carcpeB0692
Cp4.1LG08g01190	Silver-seed gourd	carcpeB0693
Cp4.1LG08g01190	Cucumber (Chinese Long) v3	cpecucB1071
Cp4.1LG08g01190	Wax gourd	cpewgoB1106
Cp4.1LG08g01190	Cucurbita pepo (Zucchini)	cpecpeB254
Cp4.1LG08g01190	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG08g01190	Cucurbita pepo (Zucchini)	cpecpeB488
Cp4.1LG08g01190	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g01190	Cucumber (Gy14) v1	cgycpeB0688
Cp4.1LG08g01190	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g01190	Cucurbita maxima (Rimu)	cmacpeB298
Cp4.1LG08g01190	Cucurbita maxima (Rimu)	cmacpeB847
Cp4.1LG08g01190	Cucurbita maxima (Rimu)	cmacpeB854
Cp4.1LG08g01190	Cucurbita moschata (Rifu)	cmocpeB261
Cp4.1LG08g01190	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g01190	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g01190	Wild cucumber (PI 183967)	cpecpiB854
Cp4.1LG08g01190	Cucumber (Chinese Long) v2	cpecuB852
Cp4.1LG08g01190	Bottle gourd (USVL1VR-Ls)	cpelsiB714
Cp4.1LG08g01190	Bottle gourd (USVL1VR-Ls)	cpelsiB719
Cp4.1LG08g01190	Watermelon (Charleston Gray)	cpewcgB786
Cp4.1LG08g01190	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g01190	Watermelon (97103) v1	cpewmB844
Cp4.1LG08g01190	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g01190	Melon (DHL92) v3.5.1	cpemeB809